TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA... 116 1e-024
ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 116 1e-024
dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA... 116 2e-024
dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA... 116 2e-024
ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA 116 2e-024
dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA... 113 1e-023
gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (ja... 113 2e-023
gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (j... 113 2e-023
gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (j... 113 2e-023
dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-023
dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-023
ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA 113 2e-023
gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (j... 112 2e-023
gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (j... 112 2e-023
gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (j... 112 2e-023
gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (j... 112 2e-023
dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA... 112 2e-023
dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA... 112 2e-023
dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA... 112 2e-023
ref|XM_473529.1| Oryza sativa (japonica cultivar-group), p... 112 2e-023
dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAG... 111 8e-023
ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA 108 4e-022
gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (j... 107 7e-022
gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germinati... 107 7e-022
gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (j... 107 7e-022
gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (j... 107 7e-022
dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPN... 107 7e-022
dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA... 107 7e-022
ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA 107 1e-021
ref|XM_469311.1| Oryza sativa (japonica cultivar-group), mRNA 106 1e-021
ref|XM_469312.1| Oryza sativa (japonica cultivar-group), mRNA 106 2e-021
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 73 8e-021
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 73 8e-021
gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 ... 73 8e-021
gb|AACV01008101.1| Oryza sativa (japonica cultivar-group) c... 73 8e-021
dbj|AG211809.1| Oryza sativa (japonica cultivar-group) DNA,... 73 9e-021
>dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075D23, full
insert sequence
Length = 3414
Score = 116 bits (249), Expect = 1e-024
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD NICHP+EFDF++C HA +GTSRPTHYHVL D+N+F+AD LQ LTYNLCY
Sbjct: 2857 GTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCY 3024
>ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3414
Score = 116 bits (249), Expect = 1e-024
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD NICHP+EFDF++C HA +GTSRPTHYHVL D+N+F+AD LQ LTYNLCY
Sbjct: 2857 GTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCY 3024
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full
insert sequence
Length = 3638
Score = 116 bits (247), Expect = 2e-024
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDFF+C HA KGTSRP HYHVL D+N FTADALQ+LT NLCY
Sbjct: 2932 GTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCY 3099
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full
insert sequence
Length = 1312
Score = 116 bits (247), Expect = 2e-024
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDFF+C HA KGTSRP HYHVL D+N FTADALQ+LT NLCY
Sbjct: 618 GTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCY 785
>ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3177
Score = 116 bits (247), Expect = 2e-024
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++C HA +GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 2791 GTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 2958
>dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full
insert sequence
Length = 3644
Score = 113 bits (242), Expect = 1e-023
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDFF+C HA KGTS P HYHVL D+N FTADALQ+LT NLCY
Sbjct: 2951 GTVVDSKICHPTEFDFFLCSHAGIKGTSHPAHYHVLWDENNFTADALQTLTNNLCY 3118
>gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63231_1A, mRNA sequence
Length = 334
Score = 113 bits (241), Expect = 2e-023
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA KGTSRP HYHVL D+N FTADALQ LT NLCY
Sbjct: 19 GTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNNLCY 186
>gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E11 3', mRNA sequence
Length = 825
Score = 113 bits (241), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 647 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 480
>gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12F14 3', mRNA sequence
Length = 720
Score = 113 bits (241), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 656 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 489
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full
insert sequence
Length = 3747
Score = 113 bits (241), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 3021 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 3188
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full
insert sequence
Length = 2043
Score = 113 bits (241), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 1460 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCY 1627
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3430
Score = 113 bits (241), Expect = 2e-023
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA KGTSRP HYHVL D+N FTADALQ LT NLCY
Sbjct: 2763 GTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNNLCY 2930
>gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F17 5', mRNA sequence
Length = 788
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 680 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 513
>gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09L10 3', mRNA sequence
Length = 771
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 689 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 522
>gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03A22 3', mRNA sequence
Length = 744
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 660 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 493
>gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C12 3', mRNA sequence
Length = 701
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 676 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 509
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full
insert sequence
Length = 3746
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 3116 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 3283
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full
insert sequence
Length = 3746
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 3031 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 3198
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full
insert sequence
Length = 3641
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 2933 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 3100
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3306
Score = 112 bits (240), Expect = 2e-023
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQ+LT NLCY
Sbjct: 2893 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 3060
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1
homologous protein, complete cds
Length = 3306
Score = 111 bits (236), Expect = 8e-023
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA KGTSRP HYHVL ++N FTADALQ LT NLCY
Sbjct: 2614 GTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWNENNFTADALQILTNNLCY 2781
>ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3267
Score = 108 bits (231), Expect = 4e-022
Identities = 42/55 (76%), Positives = 45/55 (81%)
Frame = +1 / +1
Query: 13 TVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
TVVD ICHP EFDFF+C A KGTSRP+HYHVLRDDN FTAD LQS+T NLCY
Sbjct: 2920 TVVDTVICHPREFDFFLCSQAGIKGTSRPSHYHVLRDDNNFTADQLQSVTNNLCY 3084
>gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12560, mRNA sequence
Length = 714
Score = 107 bits (229), Expect = 7e-022
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHP+EFDF++C HA +GTSRP HYHVL D+N FTAD +Q+LT NLCY
Sbjct: 100 GTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCY 267
>gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 463
Score = 107 bits (229), Expect = 7e-022
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHP+EFDF++C HA +GTSRP HYHVL D+N FTAD +Q+LT NLCY
Sbjct: 125 GTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCY 292
>gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N22 3', mRNA sequence
Length = 813
Score = 107 bits (229), Expect = 7e-022
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHP+EFDF++C HA +GTSRP HYHVL D+N FTAD +Q+LT NLCY
Sbjct: 655 GTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCY 488
>gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04I24 3', mRNA sequence
Length = 827
Score = 107 bits (229), Expect = 7e-022
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHP+EFDF++C HA +GTSRP HYHVL D+N FTAD +Q+LT NLCY
Sbjct: 598 GTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCY 431
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH
homologous protein, complete cds
Length = 3548
Score = 107 bits (229), Expect = 7e-022
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHP+EFDF++C HA +GTSRP HYHVL D+N FTAD +Q+LT NLCY
Sbjct: 2886 GTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCY 3053
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full
insert sequence
Length = 3432
Score = 107 bits (229), Expect = 7e-022
Identities = 42/56 (75%), Positives = 46/56 (82%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ I HPTEFDF++C HA KGTSRP HYHVL D+N FTADALQ LT NLCY
Sbjct: 2763 GTVVDSKIRHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNNLCY 2930
>ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3579
Score = 107 bits (228), Expect = 1e-021
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCYI 180
GTV D ICHPTEF F++C HA +GTSRPTHYHVL D+N FTAD LQ+LT NLCYI
Sbjct: 2053 GTVKDRQICHPTEFYFYLCSHAGIQGTSRPTHYHVLYDENHFTADELQTLTNNLCYI 2223
>ref|XM_469311.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3168
Score = 106 bits (227), Expect = 1e-021
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHP+EFDF++C H+ KGTSRPTHYHVL D+N F AD LQ+LTYNL Y
Sbjct: 2797 GTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSY 2964
>ref|XM_469312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2688
Score = 106 bits (226), Expect = 2e-021
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHP+EFDF++C H+ +GTS PTHY+VL D+N F+ADALQ+LTY+LCY
Sbjct: 2296 GTVVDTKICHPSEFDFYLCSHSGIQGTSHPTHYYVLFDENNFSADALQTLTYHLCY 2463
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 73.0 bits (153), Expect(2) = 8e-021
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1 / -2
Query: 70 HARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
H+ ++GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 6795200 HSFSQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 6795093
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHA 75
GTVVD ICHPTEFDF++C HA
Sbjct: 6795356 GTVVDRQICHPTEFDFYLCSHA 6795291
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 73.0 bits (153), Expect(2) = 8e-021
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1 / -1
Query: 70 HARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
H+ ++GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 2248258 HSFSQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 2248151
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHA 75
GTVVD ICHPTEFDF++C HA
Sbjct: 2248414 GTVVDRQICHPTEFDFYLCSHA 2248349
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete
sequence
Length = 139823
Score = 73.0 bits (153), Expect(2) = 8e-021
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1 / +2
Query: 70 HARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
H+ ++GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 54434 HSFSQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 54541
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHA 75
GTVVD ICHPTEFDF++C HA
Sbjct: 54278 GTVVDRQICHPTEFDFYLCSHA 54343
>gb|AACV01008101.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008101, whole
genome shotgun sequence
Length = 49062
Score = 73.0 bits (153), Expect(2) = 8e-021
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1 / -1
Query: 70 HARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
H+ ++GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 30819 HSFSQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 30712
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHA 75
GTVVD ICHPTEFDF++C HA
Sbjct: 30975 GTVVDRQICHPTEFDFYLCSHA 30910
>dbj|AG211809.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF6010_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF6010, genomic survey sequence
Length = 726
Score = 73.0 bits (153), Expect(2) = 9e-021
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1 / +1
Query: 70 HARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
H+ ++GTSRPTHYHVL D+N FTADALQSLT NLCY
Sbjct: 322 HSFSQGTSRPTHYHVLYDENHFTADALQSLTNNLCY 429
Score = 50.6 bits (104), Expect(2) = 9e-021
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHA 75
GTVVD ICHPTEFDF++C HA
Sbjct: 166 GTVVDRQICHPTEFDFYLCSHA 231
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,064,886,599
Number of Sequences: 438736
Number of extensions: 64315891
Number of successful extensions: 253437
Number of sequences better than 1.0e-020: 41
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 106239114189
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)