TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA... 221 6e-056
gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (j... 210 1e-052
dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA... 210 1e-052
ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA 210 1e-052
gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (j... 204 7e-051
ref|XM_473336.1| Oryza sativa (japonica cultivar-group), p... 200 7e-050
gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) c... 88 1e-040
emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromoso... 88 4e-037
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 88 3e-033
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 84 8e-032
dbj|AP005291.3| Oryza sativa (japonica cultivar-group) geno... 84 9e-032
gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) c... 84 9e-032
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-031
>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full
insert sequence
Length = 1963
Score = 221 bits (476), Expect = 6e-056
Identities = 94/104 (90%), Positives = 99/104 (95%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQAGLKH P NQELLDGVRRCV++I KASRGELS+EEL+ERQNKAMQDPEIQNIL D
Sbjct: 1516 LETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEELQERQNKAMQDPEIQNILKD 1695
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
PIMQQVLTD QENP+AAQAHLKNPGVMQKIQKLVSAGIVQMK*T
Sbjct: 1696 PIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 1827
Score = 145 bits (312), Expect = 2e-033
Identities = 68/103 (66%), Positives = 77/103 (74%)
Frame = +2 / -2
Query: 179 LLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVLS 358
LLHL+YPC LLDLLHHSGVLE+RL S R+LL++ Q+LLHDRI Q+VLD VLH VLS
Sbjct: 1824 LLHLDYPCTY*LLDLLHHSGVLEMRLSSLRILLEVGQHLLHDRILQNVLDFWVLHSLVLS 1645
Query: 359 LFQFLLTEFASARLGDLFNTPPYTIK*LLVFRXML*ASLISFQ 487
QFLL +F SA L D +T P TIK LLV R ML*A LI FQ
Sbjct: 1644 FLQFLLAQFPSASLVDPLDTSPNTIKQLLVVRVML*AGLIGFQ 1516
Score = 123 bits (263), Expect = 1e-026
Identities = 58/103 (56%), Positives = 66/103 (64%)
Frame = -3 / +3
Query: 485 GNLSSWPKAXPEKPGVT*WCKEVC*TDHQGEQRRTQ*GGTERETEQSHARXXXXXXXXXX 306
GNLS KA PE+PGV *WC E+C D QG QR T+ GG R+TEQ +A
Sbjct: 1518 GNLSGRLKA*PEQPGVA*WC*EMCPADQQG*QRGTEPGGIARKTEQGYAGPRNPEHSEGS 1697
Query: 305 XHAAGFDGSAGEPSGCAGAPQEPRSDAEDPEARQRRDSSDEVD 177
HAAG D GE GC+GA QEPRSDAEDPEA + RDS +EVD
Sbjct: 1698 YHAAGVDRLPGESEGCSGASQEPRSDAEDPEASKCRDSPNEVD 1826
Score = 114 bits (243), Expect(2) = 7e-038
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +3 / -3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
VYFI TIPALTSFWIFCITPGFLRCA AA GFS +SV TCCMIGS RMFWISG
Sbjct: 1826 VYFIWTIPALTSFWIFCITPGFLRCA*AAFGFSWKSVNTCCMIGSFRMFWISG 1668
Score = 66.6 bits (139), Expect(2) = 7e-038
Identities = 28/46 (60%), Positives = 32/46 (69%)
Frame = +1 / -1
Query: 349 CSVSLSVPPH*VRLCSPW*SVQHTSLHHQVTPGFSGHALGQLDKFP 486
CSV L++PP V LC P *S H S HHQ TPG SGHAL + D+FP
Sbjct: 1654 CSVFLAIPPGSVPLC*PC*SAGHIS*HHQATPGCSGHALSRPDRFP 1517
>gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F02 3', mRNA sequence
Length = 847
Score = 210 bits (452), Expect = 1e-052
Identities = 86/111 (77%), Positives = 100/111 (90%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGLKH P N ELLDGV+RC+EQI KA+RG+L++EE++ERQNKAMQDPEIQNILTD
Sbjct: 571 METYQAGLKHDPNNPELLDGVKRCIEQINKANRGDLTQEEIQERQNKAMQDPEIQNILTD 392
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
PIM+QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 391 PIMRQVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 239
Score = 116 bits (247), Expect = 2e-024
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = +2 / +2
Query: 176 RLLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVL 355
RL HLNY A +LL+LLHHS VL++ LRSPRVLLQI Q L HD I +++LDL +LH VL
Sbjct: 260 RLSHLNYSSAYKLLNLLHHSRVLKMLLRSPRVLLQIDQYLSHDGICKNILDLWILHSLVL 439
Query: 356 SLFQFLLTEFASARLGDLFNTPPYTIK*LLVFRXML*ASLISF 484
S L++ L DLF+TP +T++ V R ML L+SF
Sbjct: 440 SFLNLFLSQITPVGLVDLFDTPFHTVQQFRVIRIMLQTGLVSF 568
Score = 98.7 bits (209), Expect(2) = 2e-027
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +3 / +3
Query: 180 YFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
Y I*TIPALTSF IFCITPGFLRC+ A GFSC+S TC M+GSVR+FWISG
Sbjct: 264 YLI*TIPALTSF*IFCITPGFLRCS*EALGFSCKSTSTCRMMGSVRIFWISG 419
Score = 47.3 bits (97), Expect(2) = 2e-027
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3 / +3
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA**VS 485
+ICS HL TPSS+S FG CF+PA *VS
Sbjct: 486 LICSIHLFTPSSSSGLFGSCFKPAW*VS 569
>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full
insert sequence
Length = 2113
Score = 210 bits (452), Expect = 1e-052
Identities = 86/111 (77%), Positives = 100/111 (90%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGLKH P N ELLDGV+RC+EQI KA+RG+L++EE++ERQNKAMQDPEIQNILTD
Sbjct: 1548 METYQAGLKHGPNNPELLDGVKRCIEQINKANRGDLTQEEIQERQNKAMQDPEIQNILTD 1727
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
PIM+QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 1728 PIMRQVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 1880
Score = 116 bits (248), Expect = 2e-024
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = +2 / -3
Query: 176 RLLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVL 355
RL HLNY A +LL+LLHHS VL++ LRSPRVLLQI Q L HD I +++LDL +LH VL
Sbjct: 1859 RLSHLNYSSAYKLLNLLHHSRVLKMLLRSPRVLLQIDQYLSHDGICKNILDLWILHSLVL 1680
Query: 356 SLFQFLLTEFASARLGDLFNTPPYTIK*LLVFRXML*ASLISF 484
S L++ L DLF+TP +T++ V R ML L+SF
Sbjct: 1679 SFLNLFLSQITPVGLVDLFDTPFHTVQQFRVIRTMLQTGLVSF 1551
Score = 98.7 bits (209), Expect(2) = 3e-027
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +3 / -1
Query: 180 YFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
Y I*TIPALTSF IFCITPGFLRC+ A GFSC+S TC M+GSVR+FWISG
Sbjct: 1855 YLI*TIPALTSF*IFCITPGFLRCS*EALGFSCKSTSTCRMMGSVRIFWISG 1700
Score = 46.4 bits (95), Expect(2) = 3e-027
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3 / -1
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA**VS 485
+ICS HL TPSS+S FG CF+PA *VS
Sbjct: 1633 LICSIHLFTPSSSSGLFGPCFKPAW*VS 1550
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2113
Score = 210 bits (452), Expect = 1e-052
Identities = 86/111 (77%), Positives = 100/111 (90%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGLKH P N ELLDGV+RC+EQI KA+RG+L++EE++ERQNKAMQDPEIQNILTD
Sbjct: 1548 METYQAGLKHDPNNPELLDGVKRCIEQINKANRGDLTQEEIQERQNKAMQDPEIQNILTD 1727
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
PIM+QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 1728 PIMRQVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 1880
Score = 116 bits (247), Expect = 2e-024
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = +2 / -3
Query: 176 RLLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVL 355
RL HLNY A +LL+LLHHS VL++ LRSPRVLLQI Q L HD I +++LDL +LH VL
Sbjct: 1859 RLSHLNYSSAYKLLNLLHHSRVLKMLLRSPRVLLQIDQYLSHDGICKNILDLWILHSLVL 1680
Query: 356 SLFQFLLTEFASARLGDLFNTPPYTIK*LLVFRXML*ASLISF 484
S L++ L DLF+TP +T++ V R ML L+SF
Sbjct: 1679 SFLNLFLSQITPVGLVDLFDTPFHTVQQFRVIRIMLQTGLVSF 1551
Score = 98.7 bits (209), Expect(2) = 2e-027
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +3 / -1
Query: 180 YFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
Y I*TIPALTSF IFCITPGFLRC+ A GFSC+S TC M+GSVR+FWISG
Sbjct: 1855 YLI*TIPALTSF*IFCITPGFLRCS*EALGFSCKSTSTCRMMGSVRIFWISG 1700
Score = 47.3 bits (97), Expect(2) = 2e-027
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3 / -1
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA**VS 485
+ICS HL TPSS+S FG CF+PA *VS
Sbjct: 1633 LICSIHLFTPSSSSGLFGSCFKPAW*VS 1550
>gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08L01 3', mRNA sequence
Length = 746
Score = 204 bits (439), Expect = 7e-051
Identities = 84/111 (75%), Positives = 98/111 (88%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ET+QAGLKH P N ELLDGV+RC+EQI KA+RG+L++EE++ERQNKAMQDPEIQNI TD
Sbjct: 432 METFQAGLKHDPNNPELLDGVKRCIEQINKANRGDLTQEEIQERQNKAMQDPEIQNIFTD 253
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
PIM+QVL DLQENPRA Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 252 PIMRQVLVDLQENPRAFQEHLKNPGVMQKIQKLVSAGIVQMR*SPKARSAV 100
Score = 111 bits (238), Expect = 4e-023
Identities = 53/103 (51%), Positives = 68/103 (66%)
Frame = +2 / +1
Query: 176 RLLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVL 355
RL HLNY A +LL+LLHHS VL++ L+SPRVLLQI Q L HD I +++LDL +LH VL
Sbjct: 121 RLSHLNYSSAYKLLNLLHHSRVLKMLLKSPRVLLQIDQYLSHDGICKNILDLWILHSLVL 300
Query: 356 SLFQFLLTEFASARLGDLFNTPPYTIK*LLVFRXML*ASLISF 484
S L++ L DLF+TP +T++ V R ML L SF
Sbjct: 301 SFLNLFLSQITPVGLVDLFDTPFHTVQQFRVIRIMLQTGLESF 429
Score = 97.3 bits (206), Expect(2) = 2e-026
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3 / +2
Query: 180 YFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
Y I*TIPALTSF IFCITPGFLRC+ A GFSC+S TC M+GSV++FWISG
Sbjct: 125 YLI*TIPALTSF*IFCITPGFLRCS*KALGFSCKSTSTCRMMGSVKIFWISG 280
Score = 45.1 bits (92), Expect(2) = 2e-026
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3 / +2
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA 473
+ICS HL TPSS+S FG CF+PA
Sbjct: 347 LICSIHLFTPSSSSGLFGSCFKPA 418
>ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2241
Score = 200 bits (432), Expect = 7e-050
Identities = 84/96 (87%), Positives = 90/96 (93%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQAGLKH P NQELLDGVRRCV++I KASRGELS+EEL+ERQNKAMQDPEIQNIL D
Sbjct: 1951 LETYQAGLKHDPNNQELLDGVRRCVQRINKASRGELSQEELQERQNKAMQDPEIQNILKD 2130
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSA 200
PIMQQVLTD QENP+AAQAHLKNPGVMQKIQKL +A
Sbjct: 2131 PIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLKNA 2238
Score = 128 bits (275), Expect = 3e-028
Identities = 61/92 (66%), Positives = 69/92 (75%)
Frame = +2 / -1
Query: 212 LLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVLSLFQFLLTEFAS 391
LLDLLHHSGVLE+RL S R+LL++ Q+LLHDRI Q+VLD VLH VLS QFLL +F S
Sbjct: 2226 LLDLLHHSGVLEMRLSSLRILLEVGQHLLHDRILQNVLDFWVLHSLVLSFLQFLLAQFPS 2047
Query: 392 ARLGDLFNTPPYTIK*LLVFRXML*ASLISFQ 487
A L D +T P TIK LLV R ML*A LI FQ
Sbjct: 2046 ASLVDPLDTSPNTIKQLLVVRVML*AGLIGFQ 1951
Score = 116 bits (249), Expect = 1e-024
Identities = 53/94 (56%), Positives = 61/94 (64%)
Frame = -3 / +3
Query: 485 GNLSSWPKAXPEKPGVT*WCKEVC*TDHQGEQRRTQ*GGTERETEQSHARXXXXXXXXXX 306
GNLS PKA PE+PGV *WC E+C D QG QR T+ GG R+TEQ +A
Sbjct: 1953 GNLSGRPKA*PEQPGVA*WC*EMCPADQQG*QRGTEPGGIARKTEQGYAGPRNPEHSEGS 2132
Query: 305 XHAAGFDGSAGEPSGCAGAPQEPRSDAEDPEARQ 204
HAAG D GE GC+GA QEPRSDAEDPEA++
Sbjct: 2133 YHAAGVDRLPGESEGCSGASQEPRSDAEDPEAKK 2234
Score = 94.1 bits (199), Expect(2) = 1e-032
Identities = 37/45 (82%), Positives = 38/45 (84%)
Frame = +3 / -2
Query: 201 ALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
A SFWIFCITPGFLRCA AA GFS +SV TCCMIGS RMFWISG
Sbjct: 2237 AFFSFWIFCITPGFLRCA*AAFGFSWKSVNTCCMIGSFRMFWISG 2103
Score = 69.3 bits (145), Expect(2) = 1e-032
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +1 / -3
Query: 349 CSVSLSVPPH*VRLCSPW*SVQHTSLHHQVTPGFSGHALGQLDKFP 486
CSV L++PP V LC P *S H S HHQ TPG SGHALG+ D+FP
Sbjct: 2089 CSVFLAIPPGSVPLC*PC*SAGHIS*HHQATPGCSGHALGRPDRFP 1952
>gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010199, whole
genome shotgun sequence
Length = 11181
Score = 88.1 bits (186), Expect(4) = 1e-040
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = -1 / +3
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVLTD QENP+AAQAHLKNPGVMQKIQKLVSAGIVQMK*T
Sbjct: 6177 QVLTDFQENPKAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 6296
Score = 83.1 bits (175), Expect(3) = 8e-028
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3 / -3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTC 296
VYFI TIPALTSFWIFCITPGFLRCA AA GFS +SV TC
Sbjct: 6295 VYFIWTIPALTSFWIFCITPGFLRCA*AAFGFSWKSVNTC 6176
Score = 52.8 bits (109), Expect(4) = 1e-040
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
LETYQAGLKH P NQELLDGVRR
Sbjct: 5350 LETYQAGLKHDPNNQELLDGVRR 5418
Score = 51.5 bits (106), Expect(4) = 1e-040
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / +1
Query: 355 QNKAMQDPEIQNILTDPIMQQV 290
QNKAMQDPEIQNIL DPIMQQV
Sbjct: 6025 QNKAMQDPEIQNILKDPIMQQV 6090
Score = 50.6 bits (104), Expect(3) = 8e-028
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3 / -2
Query: 417 HLLTPSSNSWFFGXCFRPA**VS 485
+LLTPSSNSW FG CFRPA**VS
Sbjct: 5420 YLLTPSSNSWLFGSCFRPA**VS 5352
Score = 46.0 bits (94), Expect(4) = 1e-040
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / +3
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV++I KASRGELS+EEL+ERQ
Sbjct: 5502 RCVQRINKASRGELSQEELQERQ 5570
Score = 40.5 bits (82), Expect(3) = 8e-028
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3 / -2
Query: 291 TCCMIGSVRMFWISG 335
TCCMIGS RMFWISG
Sbjct: 6089 TCCMIGSFRMFWISG 6045
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
complete sequence
Length = 174570
Score = 88.1 bits (186), Expect(4) = 4e-037
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = -1 / +1
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVLTD QENP+AAQAHLKNPGVMQKIQKLVSAGIVQMK*T
Sbjct: 110953 QVLTDFQENPKAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 111072
Score = 83.1 bits (175), Expect(3) = 2e-025
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3 / -2
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTC 296
VYFI TIPALTSFWIFCITPGFLRCA AA GFS +SV TC
Sbjct: 111071 VYFIWTIPALTSFWIFCITPGFLRCA*AAFGFSWKSVNTC 110952
Score = 52.8 bits (109), Expect(4) = 4e-037
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
LETYQAGLKH P NQELLDGVRR
Sbjct: 110126 LETYQAGLKHDPNNQELLDGVRR 110194
Score = 51.5 bits (106), Expect(4) = 4e-037
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / +2
Query: 355 QNKAMQDPEIQNILTDPIMQQV 290
QNKAMQDPEIQNIL DPIMQQV
Sbjct: 110801 QNKAMQDPEIQNILKDPIMQQV 110866
Score = 50.6 bits (104), Expect(3) = 2e-025
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3 / -1
Query: 417 HLLTPSSNSWFFGXCFRPA**VS 485
+LLTPSSNSW FG CFRPA**VS
Sbjct: 110196 YLLTPSSNSWLFGSCFRPA**VS 110128
Score = 46.0 bits (94), Expect(4) = 4e-037
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / +1
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV++I KASRGELS+EEL+ERQ
Sbjct: 110278 RCVQRINKASRGELSQEELQERQ 110346
Score = 40.5 bits (82), Expect(3) = 2e-025
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3 / -1
Query: 291 TCCMIGSVRMFWISG 335
TCCMIGS RMFWISG
Sbjct: 110865 TCCMIGSFRMFWISG 110821
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 88.1 bits (186), Expect(4) = 3e-033
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = -1 / +2
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVLTD QENP+AAQAHLKNPGVMQKIQKLVSAGIVQMK*T
Sbjct: 666437 QVLTDFQENPKAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 666556
Score = 83.1 bits (175), Expect(3) = 6e-023
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3 / -1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTC 296
VYFI TIPALTSFWIFCITPGFLRCA AA GFS +SV TC
Sbjct: 666555 VYFIWTIPALTSFWIFCITPGFLRCA*AAFGFSWKSVNTC 666436
Score = 52.8 bits (109), Expect(4) = 3e-033
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
LETYQAGLKH P NQELLDGVRR
Sbjct: 665610 LETYQAGLKHDPNNQELLDGVRR 665678
Score = 51.5 bits (106), Expect(4) = 3e-033
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / +3
Query: 355 QNKAMQDPEIQNILTDPIMQQV 290
QNKAMQDPEIQNIL DPIMQQV
Sbjct: 666285 QNKAMQDPEIQNILKDPIMQQV 666350
Score = 50.6 bits (104), Expect(3) = 6e-023
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3 / -3
Query: 417 HLLTPSSNSWFFGXCFRPA**VS 485
+LLTPSSNSW FG CFRPA**VS
Sbjct: 665680 YLLTPSSNSWLFGSCFRPA**VS 665612
Score = 46.0 bits (94), Expect(4) = 3e-033
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / +2
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV++I KASRGELS+EEL+ERQ
Sbjct: 665762 RCVQRINKASRGELSQEELQERQ 665830
Score = 40.5 bits (82), Expect(3) = 6e-023
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3 / -3
Query: 291 TCCMIGSVRMFWISG 335
TCCMIGS RMFWISG
Sbjct: 666349 TCCMIGSFRMFWISG 666305
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 83.5 bits (176), Expect(3) = 8e-032
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = -1 / +3
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 1082991 QVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 1083131
Score = 50.6 bits (104), Expect(3) = 8e-032
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1 / +3
Query: 352 NKAMQDPEIQNILTDPIMQQVLTDL 278
NKAMQDPEIQNILTDPIM+QV ++
Sbjct: 1082829 NKAMQDPEIQNILTDPIMRQVTQNI 1082903
Score = 44.1 bits (90), Expect(3) = 8e-032
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = -1 / +1
Query: 427 VRRCVEQITKASRGELSEEELKERQ 353
V RC+EQI KA+RG+L++EE++ERQ
Sbjct: 1082665 VCRCIEQINKANRGDLTQEEIQERQ 1082739
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_H11
Length = 143314
Score = 83.5 bits (176), Expect(3) = 9e-032
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = -1 / +3
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 69333 QVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 69473
Score = 50.6 bits (104), Expect(3) = 9e-032
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1 / +3
Query: 352 NKAMQDPEIQNILTDPIMQQVLTDL 278
NKAMQDPEIQNILTDPIM+QV ++
Sbjct: 69171 NKAMQDPEIQNILTDPIMRQVTQNI 69245
Score = 44.1 bits (90), Expect(3) = 9e-032
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = -1 / +1
Query: 427 VRRCVEQITKASRGELSEEELKERQ 353
V RC+EQI KA+RG+L++EE++ERQ
Sbjct: 69007 VCRCIEQINKANRGDLTQEEIQERQ 69081
>gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005016, whole
genome shotgun sequence
Length = 29067
Score = 83.5 bits (176), Expect(3) = 9e-032
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = -1 / +2
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGL 155
QVL DLQENPRA+Q HLKNPGVMQKIQKLVSAGIVQM+*+ S +
Sbjct: 23555 QVLVDLQENPRASQEHLKNPGVMQKIQKLVSAGIVQMR*STKARSAV 23695
Score = 50.6 bits (104), Expect(3) = 9e-032
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1 / +2
Query: 352 NKAMQDPEIQNILTDPIMQQVLTDL 278
NKAMQDPEIQNILTDPIM+QV ++
Sbjct: 23393 NKAMQDPEIQNILTDPIMRQVTQNI 23467
Score = 44.1 bits (90), Expect(3) = 9e-032
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = -1 / +3
Query: 427 VRRCVEQITKASRGELSEEELKERQ 353
V RC+EQI KA+RG+L++EE++ERQ
Sbjct: 23229 VCRCIEQINKANRGDLTQEEIQERQ 23303
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 88.1 bits (186), Expect(4) = 1e-031
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = -1 / +1
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVLTD QENP+AAQAHLKNPGVMQKIQKLVSAGIVQMK*T
Sbjct: 4711150 QVLTDFQENPKAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 4711269
Score = 83.1 bits (175), Expect(3) = 7e-022
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +3 / -2
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTC 296
VYFI TIPALTSFWIFCITPGFLRCA AA GFS +SV TC
Sbjct: 4711268 VYFIWTIPALTSFWIFCITPGFLRCA*AAFGFSWKSVNTC 4711149
Score = 52.8 bits (109), Expect(4) = 1e-031
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
LETYQAGLKH P NQELLDGVRR
Sbjct: 4710323 LETYQAGLKHDPNNQELLDGVRR 4710391
Score = 51.5 bits (106), Expect(4) = 1e-031
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -1 / +2
Query: 355 QNKAMQDPEIQNILTDPIMQQV 290
QNKAMQDPEIQNIL DPIMQQV
Sbjct: 4710998 QNKAMQDPEIQNILKDPIMQQV 4711063
Score = 50.6 bits (104), Expect(3) = 7e-022
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3 / -1
Query: 417 HLLTPSSNSWFFGXCFRPA**VS 485
+LLTPSSNSW FG CFRPA**VS
Sbjct: 4710393 YLLTPSSNSWLFGSCFRPA**VS 4710325
Score = 46.0 bits (94), Expect(4) = 1e-031
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -1 / +1
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV++I KASRGELS+EEL+ERQ
Sbjct: 4710475 RCVQRINKASRGELSQEELQERQ 4710543
Score = 40.5 bits (82), Expect(3) = 7e-022
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3 / -1
Query: 291 TCCMIGSVRMFWISG 335
TCCMIGS RMFWISG
Sbjct: 4711062 TCCMIGSFRMFWISG 4711018
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,948,254,178
Number of Sequences: 438736
Number of extensions: 38665765
Number of successful extensions: 239102
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 94480396712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)