TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 107 2e-026
emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OS... 107 3e-026
gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) c... 107 3e-026
gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3... 101 6e-022
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 107 9e-022
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 107 9e-022
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 107 bits (229), Expect(3) = 2e-026
Identities = 38/51 (74%), Positives = 47/51 (92%)
Frame = -2 / +1
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+SGSALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 11209726 ASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWN 11209878
Score = 87.2 bits (184), Expect(3) = 1e-022
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = +1 / -2
Query: 397 FHPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCP 543
FHPAGMALLA + PELNV+R NGP RAEPE SL APH+CCIG H P
Sbjct: 11209877 FHPAGMALLATNIWPELNVRRTENGPCRAEPELSLHTAPHDCCIGIHDP 11209731
Score = 34.1 bits (68), Expect(3) = 1e-022
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -3
Query: 359 SPPLRLPGTPHPHSILQVWHCW 424
S PLR GTP S L VW CW
Sbjct: 11209915 SSPLRRAGTPCRGSTLPVWRCW 11209850
Score = 26.3 bits (51), Expect(3) = 2e-026
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +3
Query: 372 RSGGD*GQAQEWWQPG 325
R GD G ++WW PG
Sbjct: 11209899 RRSGDEG*GKKWWSPG 11209946
Score = 25.8 bits (50), Expect(3) = 2e-026
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / +1
Query: 590 DCESDLSAVDIMQSSAG 540
D +SDL+AVDIM AG
Sbjct: 11209675 DNDSDLAAVDIMPIGAG 11209725
Score = 25.8 bits (50), Expect(3) = 1e-022
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 541 PAELCMMSTAERSLSQS 591
PA + MMSTA RSLS S
Sbjct: 11209724 PAPIGMMSTAARSLSLS 11209674
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
chromosome 3 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 183327
Score = 107 bits (229), Expect(3) = 3e-026
Identities = 38/51 (74%), Positives = 47/51 (92%)
Frame = -2 / +2
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+SGSALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 81227 ASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWN 81379
Score = 87.2 bits (184), Expect(3) = 2e-022
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = +1 / -1
Query: 397 FHPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCP 543
FHPAGMALLA + PELNV+R NGP RAEPE SL APH+CCIG H P
Sbjct: 81378 FHPAGMALLATNIWPELNVRRTENGPCRAEPELSLHTAPHDCCIGIHDP 81232
Score = 34.1 bits (68), Expect(3) = 2e-022
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -2
Query: 359 SPPLRLPGTPHPHSILQVWHCW 424
S PLR GTP S L VW CW
Sbjct: 81416 SSPLRRAGTPCRGSTLPVWRCW 81351
Score = 26.3 bits (51), Expect(3) = 3e-026
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +1
Query: 372 RSGGD*GQAQEWWQPG 325
R GD G ++WW PG
Sbjct: 81400 RRSGDEG*GKKWWSPG 81447
Score = 25.8 bits (50), Expect(3) = 2e-022
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 541 PAELCMMSTAERSLSQS 591
PA + MMSTA RSLS S
Sbjct: 81225 PAPIGMMSTAARSLSLS 81175
Score = 25.8 bits (50), Expect(3) = 3e-026
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / +2
Query: 590 DCESDLSAVDIMQSSAG 540
D +SDL+AVDIM AG
Sbjct: 81176 DNDSDLAAVDIMPIGAG 81226
>gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007462, whole
genome shotgun sequence
Length = 20053
Score = 107 bits (229), Expect(3) = 3e-026
Identities = 38/51 (74%), Positives = 47/51 (92%)
Frame = -2 / +3
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+SGSALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 7011 ASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWN 7163
Score = 87.2 bits (184), Expect(3) = 2e-022
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = +1 / -1
Query: 397 FHPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCP 543
FHPAGMALLA + PELNV+R NGP RAEPE SL APH+CCIG H P
Sbjct: 7162 FHPAGMALLATNIWPELNVRRTENGPCRAEPELSLHTAPHDCCIGIHDP 7016
Score = 34.1 bits (68), Expect(3) = 2e-022
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -2
Query: 359 SPPLRLPGTPHPHSILQVWHCW 424
S PLR GTP S L VW CW
Sbjct: 7200 SSPLRRAGTPCRGSTLPVWRCW 7135
Score = 26.3 bits (51), Expect(3) = 3e-026
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +2
Query: 372 RSGGD*GQAQEWWQPG 325
R GD G ++WW PG
Sbjct: 7184 RRSGDEG*GKKWWSPG 7231
Score = 25.8 bits (50), Expect(3) = 2e-022
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 541 PAELCMMSTAERSLSQS 591
PA + MMSTA RSLS S
Sbjct: 7009 PAPIGMMSTAARSLSLS 6959
Score = 25.8 bits (50), Expect(3) = 3e-026
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / +3
Query: 590 DCESDLSAVDIMQSSAG 540
D +SDL+AVDIM AG
Sbjct: 6960 DNDSDLAAVDIMPIGAG 7010
>gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31973, mRNA sequence
Length = 641
Score = 101 bits (215), Expect(2) = 6e-022
Identities = 36/51 (70%), Positives = 45/51 (88%)
Frame = -2 / +3
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+ SALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 153 ASGSWIPMQQSWGAVWRLNFRSALQGPFSVRLTFSSGQMFVASNAIPAGWN 305
Score = 26.3 bits (51), Expect(2) = 6e-022
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +2
Query: 372 RSGGD*GQAQEWWQPG 325
R GD G ++WW PG
Sbjct: 326 RRSGDEG*GKKWWSPG 373
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 107 bits (229), Expect = 9e-022
Identities = 38/51 (74%), Positives = 47/51 (92%)
Frame = -2 / +1
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+SGSALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 25260433 ASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWN 25260585
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 107 bits (229), Expect = 9e-022
Identities = 38/51 (74%), Positives = 47/51 (92%)
Frame = -2 / +1
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
++G W+PMQ SWGA+WRL+SGSALQGPF +RLTFSSG++ +ASNAIPAGWN
Sbjct: 24702538 ASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWN 24702690
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,142,508,688
Number of Sequences: 438736
Number of extensions: 64851876
Number of successful extensions: 393745
Number of sequences better than 1.0e-020: 10
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 126215699763
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)