TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 93 1e-026
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 93 1e-026
dbj|AP005456.3| Oryza sativa (japonica cultivar-group) geno... 93 1e-026
gb|AACV01014354.1| Oryza sativa (japonica cultivar-group) c... 93 1e-026
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 93.2 bits (197), Expect(2) = 1e-026
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = -1 / -2
Query: 749 EFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDEASGKRRSRSK 603
EFGFLSMGHEFD+YPKGRIR PKDWNWFLEE ++ SDDE + + + K
Sbjct: 2861485 EFGFLSMGHEFDNYPKGRIRPPKDWNWFLEEVRKGSDDEDDEEGKLKGK 2861339
Score = 78.5 bits (165), Expect(3) = 2e-024
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1 / +3
Query: 631 ASSSEVLFASSRNQFQSFGARILPFG*LSNSWPIDRNPNS 750
+SSSE SSRNQFQSFG RILP G*LSNSWPID+NPNS
Sbjct: 2861367 SSSSEPFLTSSRNQFQSFGGRILPLG*LSNSWPIDKNPNS 2861486
Score = 51.0 bits (105), Expect(2) = 1e-026
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = -2 / -3
Query: 583 RRKMEKAKMKTGLVRVRMKKSPREELPV*RDQSIRQDLKAQKNIVGKTRRLEVAEVSTKM 404
RR K K G VRVR K +E+ V*RDQS+ QD K Q+N+ K RL++ M
Sbjct: 2861328 RRMRGSVKTKIG*VRVRTIKIHYQEVLV*RDQSMLQDQKNQRNLARKKLRLKIKIRIVGM 2861149
Query: 403 TALRMSKM 380
+R +KM
Sbjct: 2861148 KKMRGTKM 2861125
Score = 48.7 bits (100), Expect(3) = 2e-024
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3 / +2
Query: 432 SLRVFPTMFF*AFRSCRILWSLHTGNSSRGLFFILTLTSPVFIFAFSIFLLL 587
SL F F F SC IL SLHT S +F +LTLT P+F+F + LL+
Sbjct: 2861177 SLSFFLARFLWFF*SCNIL*SLHTRTS***IFIVLTLTYPIFVFTLPLILLV 2861332
Score = 26.7 bits (52), Expect(3) = 2e-024
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2 / +1
Query: 254 RRFFFDVVINHHLPHRQIPPLHRSAL 331
R + V+ H HR PPL RSAL
Sbjct: 2860990 RSYLGIVISRHRRRHRTRPPLPRSAL 2861067
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 93.2 bits (197), Expect(2) = 1e-026
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = -1 / -3
Query: 749 EFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDEASGKRRSRSK 603
EFGFLSMGHEFD+YPKGRIR PKDWNWFLEE ++ SDDE + + + K
Sbjct: 1282069 EFGFLSMGHEFDNYPKGRIRPPKDWNWFLEEVRKGSDDEDDEEGKLKGK 1281923
Score = 78.5 bits (165), Expect(3) = 3e-024
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1 / +3
Query: 631 ASSSEVLFASSRNQFQSFGARILPFG*LSNSWPIDRNPNS 750
+SSSE SSRNQFQSFG RILP G*LSNSWPID+NPNS
Sbjct: 1281951 SSSSEPFLTSSRNQFQSFGGRILPLG*LSNSWPIDKNPNS 1282070
Score = 51.0 bits (105), Expect(2) = 1e-026
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = -2 / -1
Query: 583 RRKMEKAKMKTGLVRVRMKKSPREELPV*RDQSIRQDLKAQKNIVGKTRRLEVAEVSTKM 404
RR K K G VRVR K +E+ V*RDQS+ QD K Q+N+ K RL++ M
Sbjct: 1281912 RRMRGSVKTKIG*VRVRTIKIHYQEVLV*RDQSMLQDQKNQRNLARKKLRLKIKIRIVGM 1281733
Query: 403 TALRMSKM 380
+R +KM
Sbjct: 1281732 KKMRGTKM 1281709
Score = 48.7 bits (100), Expect(3) = 3e-024
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3 / +2
Query: 432 SLRVFPTMFF*AFRSCRILWSLHTGNSSRGLFFILTLTSPVFIFAFSIFLLL 587
SL F F F SC IL SLHT S +F +LTLT P+F+F + LL+
Sbjct: 1281761 SLSFFLARFLWFF*SCNIL*SLHTRTS***IFIVLTLTYPIFVFTLPLILLV 1281916
Score = 26.7 bits (52), Expect(3) = 3e-024
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2 / +1
Query: 254 RRFFFDVVINHHLPHRQIPPLHRSAL 331
R + V+ H HR PPL RSAL
Sbjct: 1281574 RSYLGIVISRHRRRHRTRPPLPRSAL 1281651
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0513E02
Length = 141477
Score = 93.2 bits (197), Expect(2) = 1e-026
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = -1 / -3
Query: 749 EFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDEASGKRRSRSK 603
EFGFLSMGHEFD+YPKGRIR PKDWNWFLEE ++ SDDE + + + K
Sbjct: 50569 EFGFLSMGHEFDNYPKGRIRPPKDWNWFLEEVRKGSDDEDDEEGKLKGK 50423
Score = 78.5 bits (165), Expect(3) = 3e-024
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1 / +3
Query: 631 ASSSEVLFASSRNQFQSFGARILPFG*LSNSWPIDRNPNS 750
+SSSE SSRNQFQSFG RILP G*LSNSWPID+NPNS
Sbjct: 50451 SSSSEPFLTSSRNQFQSFGGRILPLG*LSNSWPIDKNPNS 50570
Score = 51.0 bits (105), Expect(2) = 1e-026
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = -2 / -1
Query: 583 RRKMEKAKMKTGLVRVRMKKSPREELPV*RDQSIRQDLKAQKNIVGKTRRLEVAEVSTKM 404
RR K K G VRVR K +E+ V*RDQS+ QD K Q+N+ K RL++ M
Sbjct: 50412 RRMRGSVKTKIG*VRVRTIKIHYQEVLV*RDQSMLQDQKNQRNLARKKLRLKIKIRIVGM 50233
Query: 403 TALRMSKM 380
+R +KM
Sbjct: 50232 KKMRGTKM 50209
Score = 48.7 bits (100), Expect(3) = 3e-024
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3 / +2
Query: 432 SLRVFPTMFF*AFRSCRILWSLHTGNSSRGLFFILTLTSPVFIFAFSIFLLL 587
SL F F F SC IL SLHT S +F +LTLT P+F+F + LL+
Sbjct: 50261 SLSFFLARFLWFF*SCNIL*SLHTRTS***IFIVLTLTYPIFVFTLPLILLV 50416
Score = 26.7 bits (52), Expect(3) = 3e-024
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2 / +1
Query: 254 RRFFFDVVINHHLPHRQIPPLHRSAL 331
R + V+ H HR PPL RSAL
Sbjct: 50074 RSYLGIVISRHRRRHRTRPPLPRSAL 50151
>gb|AACV01014354.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014354, whole
genome shotgun sequence
Length = 5194
Score = 93.2 bits (197), Expect(2) = 1e-026
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = -1 / -1
Query: 749 EFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDEASGKRRSRSK 603
EFGFLSMGHEFD+YPKGRIR PKDWNWFLEE ++ SDDE + + + K
Sbjct: 3769 EFGFLSMGHEFDNYPKGRIRPPKDWNWFLEEVRKGSDDEDDEEGKLKGK 3623
Score = 78.5 bits (165), Expect(3) = 3e-024
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1 / +3
Query: 631 ASSSEVLFASSRNQFQSFGARILPFG*LSNSWPIDRNPNS 750
+SSSE SSRNQFQSFG RILP G*LSNSWPID+NPNS
Sbjct: 3651 SSSSEPFLTSSRNQFQSFGGRILPLG*LSNSWPIDKNPNS 3770
Score = 51.0 bits (105), Expect(2) = 1e-026
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = -2 / -2
Query: 583 RRKMEKAKMKTGLVRVRMKKSPREELPV*RDQSIRQDLKAQKNIVGKTRRLEVAEVSTKM 404
RR K K G VRVR K +E+ V*RDQS+ QD K Q+N+ K RL++ M
Sbjct: 3612 RRMRGSVKTKIG*VRVRTIKIHYQEVLV*RDQSMLQDQKNQRNLARKKLRLKIKIRIVGM 3433
Query: 403 TALRMSKM 380
+R +KM
Sbjct: 3432 KKMRGTKM 3409
Score = 48.7 bits (100), Expect(3) = 3e-024
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3 / +2
Query: 432 SLRVFPTMFF*AFRSCRILWSLHTGNSSRGLFFILTLTSPVFIFAFSIFLLL 587
SL F F F SC IL SLHT S +F +LTLT P+F+F + LL+
Sbjct: 3461 SLSFFLARFLWFF*SCNIL*SLHTRTS***IFIVLTLTYPIFVFTLPLILLV 3616
Score = 26.7 bits (52), Expect(3) = 3e-024
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2 / +1
Query: 254 RRFFFDVVINHHLPHRQIPPLHRSAL 331
R + V+ H HR PPL RSAL
Sbjct: 3274 RSYLGIVISRHRRRHRTRPPLPRSAL 3351
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,819,929,819
Number of Sequences: 438736
Number of extensions: 68154316
Number of successful extensions: 312033
Number of sequences better than 1.0e-020: 5
length of database: 933,473,305
effective HSP length: 60
effective length of database: 907,149,145
effective search space used: 228601584540
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)