TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_472685.1| Oryza sativa (japonica cultivar-group), p... 144 2e-049
gb|AACV01003595.1| Oryza sativa (japonica cultivar-group) c... 70 1e-036
emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromoso... 70 2e-035
emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromoso... 70 2e-035
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 70 4e-032
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 70 4e-030
>ref|XM_472685.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2763
Score = 144 bits (308), Expect(2) = 2e-049
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = -2 / +1
Query: 612 EVQLVSPETNRKDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTHPEYEVETANGRITK 433
++QLVSPET RKDVNL GI+QSPI+NMLRKVEK +QDIPKHRKVTH EYEVETANGRITK
Sbjct: 2383 QLQLVSPETKRKDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVTHHEYEVETANGRITK 2562
Query: 432 RRKTRSPVMFG 400
RRKT+S VMFG
Sbjct: 2563 RRKTKSTVMFG 2595
Score = 122 bits (262), Expect(2) = 5e-044
Identities = 55/69 (79%), Positives = 59/69 (85%)
Frame = +2 / -2
Query: 398 SPNMTGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTS 577
+PNMT LLVFLRFVILPFAVSTSYS VTFLCLGIS FSTFL+MF IGDC +P + TS
Sbjct: 2597 TPNMTVLLVFLRFVILPFAVSTSYS*CVTFLCLGISWVPFSTFLSMFVIGDCIMPDRLTS 2418
Query: 578 FRLVSGLTN 604
FRLVSGLTN
Sbjct: 2417 FRLVSGLTN 2391
Score = 122 bits (261), Expect(2) = 1e-037
Identities = 52/72 (72%), Positives = 57/72 (79%)
Frame = +1 / -1
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYLSMFRNILRHFLYLSQHVRNW*L*NPR*VYV 576
+ KHD A SFPALCDSSICCLNF+F + YLSM RNIL FLYLSQHV NW*L N R*+ +
Sbjct: 2598 YPKHDGALSFPALCDSSICCLNFIFMMCYLSMLRNILGSFLYLSQHVCNW*LYNAR*INI 2419
Query: 577 LPIGLRTYQLDL 612
LP GLRT QL L
Sbjct: 2418 LPFGLRTNQLKL 2383
Score = 103 bits (220), Expect(2) = 4e-032
Identities = 48/70 (68%), Positives = 52/70 (74%)
Frame = -1 / +3
Query: 604 VGKSGDQSEGRKLTWDFTITNFEHVEKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQE 425
VG S DQ+EG W +TITN++H EKGRE GYS* *KGN *I S*DSKWKNHKAQE
Sbjct: 2391 VG*S*DQTEGC*SIWHYTITNYKHAEKGRERNPGYS*A*KGNTS*I*S*DSKWKNHKAQE 2570
Query: 424 N*EPCHVW*T 395
N*E HVW T
Sbjct: 2571 N*EHRHVWGT 2600
Score = 103 bits (220), Expect(2) = 2e-032
Identities = 49/68 (72%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 605 SW*VRRPIGRT*TYLGFYNHQFRTC*ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAG 426
SW V RP GR YL YNHQ +TC*ER*RK RIFL+IER* +N KLRQQMEESQSAG
Sbjct: 2390 SWLVLRPNGRMLIYLALYNHQLQTC*ER*RKEPRIFLSIER*HIMNMKLRQQMEESQSAG 2569
Query: 425 KLGALSCL 402
KL A SCL
Sbjct: 2570 KLRAPSCL 2593
Score = 98.2 bits (208), Expect(2) = 2e-030
Identities = 48/70 (68%), Positives = 50/70 (71%)
Frame = +3 / -3
Query: 396 VHQT*QGS*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETLSLPFSTCSKLVIVKSQVSLR 575
V QT*+ S*FSCAL*FFHLLSQL I LPFY *EYP LSLPFS C LVIV Q+
Sbjct: 2599 VPQT*RCS*FSCAL*FFHLLSQLHIHDVLPFYA*EYPGFLSLPFSACL*LVIV*CQID*H 2420
Query: 576 PSDWSPDLPT 605
PS WS D PT
Sbjct: 2419 PSVWSQD*PT 2390
Score = 79.0 bits (166), Expect(2) = 5e-044
Identities = 36/51 (70%), Positives = 37/51 (72%)
Frame = +2 / -2
Query: 248 A*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLCNGF*EFGS 400
A*GSSAYGF EPSENNSPMFAG D TFF F+ SLS V CN F* GS
Sbjct: 2753 A*GSSAYGFNEPSENNSPMFAGWGWDPATTFFIFVGSLSAVSCNDF*VLGS 2601
Score = 75.8 bits (159), Expect(2) = 2e-049
Identities = 32/52 (61%), Positives = 35/52 (67%)
Frame = -2 / +1
Query: 399 EPNSQKPLHNXXXXXXXXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAF 244
EPN+QK LH+ V S HPANIGELFSEGSLNPYA+DPYAF
Sbjct: 2602 EPNTQKSLHDTADKDPTKMKKVVAGSHPHPANIGELFSEGSLNPYAEDPYAF 2757
Score = 59.7 bits (124), Expect(2) = 2e-032
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -1 / +3
Query: 397 TELSETIA*YY*QRC*KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLC 248
T+ SE IA*Y *Q K ++G IP CKHW*I+ *G +ES+C R LC
Sbjct: 2604 TQHSEVIA*YC*QGSYKNEEGCCWIPSPPCKHW*IVF*GLVESICRRSLC 2753
Score = 58.3 bits (121), Expect(2) = 4e-032
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -3 / +2
Query: 398 NRTLRNHCIILLTKMLKN*KRFLQDPVHILQTLVNYSLRVP*I 270
N TLR+HC+ILLT++L+ *+R L DP+ LQTLVN LR *I
Sbjct: 2603 NPTLRSHCMILLTRILQK*RRLLLDPIPTLQTLVNCFLRAR*I 2731
Score = 58.3 bits (121), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 33/54 (61%)
Frame = +1 / -1
Query: 238 LVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQWFLRVRF 399
L K IR+ I IQ LR+ FTNVCR+ GS NL F I VSSIMQ L V F
Sbjct: 2763 LAKCIRIFGIWIQRALRKQFTNVCRVGMGSSNNLLHFCRILVSSIMQ*LLSVGF 2602
Score = 58.3 bits (121), Expect(2) = 1e-037
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = +3 / -3
Query: 240 SQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYAMVSE 389
SQ HK +H DS +PQ+ IHQCLQ GI +P * CQ Y+AM SE
Sbjct: 2761 SQMHKDLRHMDSTSPQKTIHQCLQGGDGIQQQPSSFL*DPCQQYHAMTSE 2612
>gb|AACV01003595.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003595, whole
genome shotgun sequence
Length = 73751
Score = 70.3 bits (147), Expect(4) = 1e-036
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2 / -1
Query: 579 KDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTH 475
+DVNL GI+QSPI+NMLRKVEK +QDIPKHRKV H
Sbjct: 12836 QDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVNH 12732
Score = 66.1 bits (138), Expect(4) = 1e-036
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2 / -2
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S HPANIGELFSEGSLNPYA+DPYAF *K+
Sbjct: 11767 SHPHPANIGELFSEGSLNPYAEDPYAFG*KV 11675
Score = 61.1 bits (127), Expect(4) = 1e-036
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / -2
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKT+S VMFG
Sbjct: 12613 VTHHEYEVETANGRITKRRKTKSTVMFG 12530
Score = 59.3 bits (123), Expect(4) = 6e-027
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / +2
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYL 486
+ KHD A SFPALCDSSICCLNF+F + YL
Sbjct: 12527 YPKHDGALSFPALCDSSICCLNFIFMMCYL 12616
Score = 57.4 bits (119), Expect(4) = 6e-027
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +2 / +3
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTF 340
++F* A*GSSAYGF EPSENNSPMFAG D T+
Sbjct: 11673 ITF*PNA*GSSAYGFNEPSENNSPMFAGWGWDPATTW 11783
Score = 53.3 bits (110), Expect(4) = 6e-027
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / +1
Query: 482 TFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSF 580
TFLCLGIS FSTFL+MF IGDC +P + TS+
Sbjct: 12739 TFLCLGISWVPFSTFLSMFVIGDCIMPDRLTSW 12837
Score = 37.3 bits (75), Expect(4) = 1e-036
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = -3 / -1
Query: 398 NRTLRNHCIILLTKMLKN*KRFL 330
N TLR+HC+ILLT++L+ *+R++
Sbjct: 12428 NPTLRSHCMILLTRILQK*RRYI 12360
Score = 31.8 bits (63), Expect(4) = 6e-027
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / +2
Query: 335 TFFSFLTSLSVVLCNGF*EFGS 400
TFF F+ SLS V CN F* GS
Sbjct: 12365 TFFIFVGSLSAVSCNDF*VLGS 12430
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
complete sequence
Length = 175698
Score = 70.3 bits (147), Expect(4) = 2e-035
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2 / +3
Query: 579 KDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTH 475
+DVNL GI+QSPI+NMLRKVEK +QDIPKHRKV H
Sbjct: 169047 QDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVNH 169151
Score = 66.1 bits (138), Expect(4) = 2e-035
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2 / +1
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S HPANIGELFSEGSLNPYA+DPYAF *K+
Sbjct: 170116 SHPHPANIGELFSEGSLNPYAEDPYAFG*KV 170208
Score = 61.1 bits (127), Expect(4) = 2e-035
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / +1
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKT+S VMFG
Sbjct: 169270 VTHHEYEVETANGRITKRRKTKSTVMFG 169353
Score = 59.3 bits (123), Expect(4) = 7e-026
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / -1
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYL 486
+ KHD A SFPALCDSSICCLNF+F + YL
Sbjct: 169356 YPKHDGALSFPALCDSSICCLNFIFMMCYL 169267
Score = 57.4 bits (119), Expect(4) = 7e-026
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +2 / -2
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTF 340
++F* A*GSSAYGF EPSENNSPMFAG D T+
Sbjct: 170210 ITF*PNA*GSSAYGFNEPSENNSPMFAGWGWDPATTW 170100
Score = 53.3 bits (110), Expect(4) = 7e-026
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -3
Query: 482 TFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSF 580
TFLCLGIS FSTFL+MF IGDC +P + TS+
Sbjct: 169144 TFLCLGISWVPFSTFLSMFVIGDCIMPDRLTSW 169046
Score = 37.3 bits (75), Expect(4) = 2e-035
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 398 NRTLRNHCIILLTKMLKN*KRFL 330
N TLR+HC+ILLT++L+ *+R++
Sbjct: 169455 NPTLRSHCMILLTRILQK*RRYI 169523
Score = 31.8 bits (63), Expect(4) = 7e-026
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 335 TFFSFLTSLSVVLCNGF*EFGS 400
TFF F+ SLS V CN F* GS
Sbjct: 169518 TFFIFVGSLSAVSCNDF*VLGS 169453
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07,
complete sequence
Length = 179021
Score = 70.3 bits (147), Expect(4) = 2e-035
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2 / +3
Query: 579 KDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTH 475
+DVNL GI+QSPI+NMLRKVEK +QDIPKHRKV H
Sbjct: 7392 QDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVNH 7496
Score = 66.1 bits (138), Expect(4) = 2e-035
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2 / +1
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S HPANIGELFSEGSLNPYA+DPYAF *K+
Sbjct: 8461 SHPHPANIGELFSEGSLNPYAEDPYAFG*KV 8553
Score = 61.1 bits (127), Expect(4) = 2e-035
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / +1
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKT+S VMFG
Sbjct: 7615 VTHHEYEVETANGRITKRRKTKSTVMFG 7698
Score = 59.3 bits (123), Expect(4) = 7e-026
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / -3
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYL 486
+ KHD A SFPALCDSSICCLNF+F + YL
Sbjct: 7701 YPKHDGALSFPALCDSSICCLNFIFMMCYL 7612
Score = 57.4 bits (119), Expect(4) = 7e-026
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +2 / -1
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTF 340
++F* A*GSSAYGF EPSENNSPMFAG D T+
Sbjct: 8555 ITF*PNA*GSSAYGFNEPSENNSPMFAGWGWDPATTW 8445
Score = 53.3 bits (110), Expect(4) = 7e-026
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -2
Query: 482 TFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSF 580
TFLCLGIS FSTFL+MF IGDC +P + TS+
Sbjct: 7489 TFLCLGISWVPFSTFLSMFVIGDCIMPDRLTSW 7391
Score = 37.3 bits (75), Expect(4) = 2e-035
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 398 NRTLRNHCIILLTKMLKN*KRFL 330
N TLR+HC+ILLT++L+ *+R++
Sbjct: 7800 NPTLRSHCMILLTRILQK*RRYI 7868
Score = 31.8 bits (63), Expect(4) = 7e-026
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / -3
Query: 335 TFFSFLTSLSVVLCNGF*EFGS 400
TFF F+ SLS V CN F* GS
Sbjct: 7863 TFFIFVGSLSAVSCNDF*VLGS 7798
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 70.3 bits (147), Expect(4) = 4e-032
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2 / +3
Query: 579 KDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTH 475
+DVNL GI+QSPI+NMLRKVEK +QDIPKHRKV H
Sbjct: 169047 QDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVNH 169151
Score = 66.1 bits (138), Expect(4) = 4e-032
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2 / +1
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S HPANIGELFSEGSLNPYA+DPYAF *K+
Sbjct: 170116 SHPHPANIGELFSEGSLNPYAEDPYAFG*KV 170208
Score = 61.1 bits (127), Expect(4) = 4e-032
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / +1
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKT+S VMFG
Sbjct: 169270 VTHHEYEVETANGRITKRRKTKSTVMFG 169353
Score = 59.3 bits (123), Expect(4) = 1e-023
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / -1
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYL 486
+ KHD A SFPALCDSSICCLNF+F + YL
Sbjct: 169356 YPKHDGALSFPALCDSSICCLNFIFMMCYL 169267
Score = 53.3 bits (110), Expect(4) = 1e-023
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / -3
Query: 482 TFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSF 580
TFLCLGIS FSTFL+MF IGDC +P + TS+
Sbjct: 169144 TFLCLGISWVPFSTFLSMFVIGDCIMPDRLTSW 169046
Score = 37.3 bits (75), Expect(4) = 4e-032
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 398 NRTLRNHCIILLTKMLKN*KRFL 330
N TLR+HC+ILLT++L+ *+R++
Sbjct: 169455 NPTLRSHCMILLTRILQK*RRYI 169523
Score = 31.8 bits (63), Expect(4) = 1e-023
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 335 TFFSFLTSLSVVLCNGF*EFGS 400
TFF F+ SLS V CN F* GS
Sbjct: 169518 TFFIFVGSLSAVSCNDF*VLGS 169453
Score = 23.5 bits (45), Expect(4) = 1e-023
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / -1
Query: 575 SFRLVSGLTN 604
+FRLVSGLTN
Sbjct: 168969 TFRLVSGLTN 168940
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 70.3 bits (147), Expect(4) = 4e-030
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2 / -1
Query: 579 KDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTH 475
+DVNL GI+QSPI+NMLRKVEK +QDIPKHRKV H
Sbjct: 6219301 QDVNLSGIIQSPITNMLRKVEKGTQDIPKHRKVNH 6219197
Score = 66.1 bits (138), Expect(4) = 4e-030
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = -2 / -2
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S HPANIGELFSEGSLNPYA+DPYAF *K+
Sbjct: 6218232 SHPHPANIGELFSEGSLNPYAEDPYAFG*KV 6218140
Score = 61.1 bits (127), Expect(4) = 4e-030
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / -2
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKT+S VMFG
Sbjct: 6219078 VTHHEYEVETANGRITKRRKTKSTVMFG 6218995
Score = 59.3 bits (123), Expect(3) = 9e-022
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / +1
Query: 397 FTKHDRAPSFPALCDSSICCLNFVFRVGYL 486
+ KHD A SFPALCDSSICCLNF+F + YL
Sbjct: 6218992 YPKHDGALSFPALCDSSICCLNFIFMMCYL 6219081
Score = 53.3 bits (110), Expect(3) = 9e-022
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2 / +3
Query: 482 TFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSF 580
TFLCLGIS FSTFL+MF IGDC +P + TS+
Sbjct: 6219204 TFLCLGISWVPFSTFLSMFVIGDCIMPDRLTSW 6219302
Score = 37.3 bits (75), Expect(4) = 4e-030
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = -3 / -1
Query: 398 NRTLRNHCIILLTKMLKN*KRFL 330
N TLR+HC+ILLT++L+ *+R++
Sbjct: 6218893 NPTLRSHCMILLTRILQK*RRYI 6218825
Score = 31.8 bits (63), Expect(3) = 9e-022
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 335 TFFSFLTSLSVVLCNGF*EFGS 400
TFF F+ SLS V CN F* GS
Sbjct: 6218830 TFFIFVGSLSAVSCNDF*VLGS 6218895
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,314,706,598
Number of Sequences: 438736
Number of extensions: 66684895
Number of successful extensions: 254939
Number of sequences better than 1.0e-020: 8
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 131663859465
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)