TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 140 2e-031
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-029
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 133 3e-029
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 122 3e-026
gb|C73760.2|C73760 C73760 Rice panicle (longer than 10cm) O... 90 6e-022
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 140 bits (300), Expect = 2e-031
Identities = 60/118 (50%), Positives = 76/118 (64%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI +QC+QA K GFEVV KDLA+ P PWY +D FS F+ R
Sbjct: 619 EIELGNGLPDIRTTKQCIQALKDAGFEVVSVKDLAEDSPLPWYLPLDSSQFSLNGFRLTR 798
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPL 281
GR +T +V TLE L +AP GS+ + L +A++GL+KG +EGIFT FFVL RKPL
Sbjct: 799 VGRFITHMLVKTLECLHVAPQGSLRVSSFLETAAEGLVKGAKEGIFTPIFFVLARKPL 972
Score = 105 bits (225), Expect = 4e-021
Identities = 57/120 (47%), Positives = 63/120 (52%)
Frame = +3 / -2
Query: 282 RGLRPRTKKVAVKIPSRPPFRRPSEALIRTL*APMLPAGAIRRNSSVLTIARVTIRPGRG 461
RG R +TKK+ VKIPS PF PS A+ R L LP GA R+SSV T V RP R
Sbjct: 971 RGFRAKTKKMGVKIPSLAPFTSPSAAVSRKLETLRLPCGATWRHSSVFTSM*VMKRPTRV 792
Query: 462 HWK*AHEXXXGSITRYHGQGKT*ARSFAKTTSNPXXFXAWTHWRXXXMSXXXSPSSXSXL 641
K E S RYHG G++ ARSF TTS P AW H MS PSS S L
Sbjct: 791 RRKPLSENWLESRGRYHGNGESSARSFTDTTSKPASLRAWMHCLVVLMSGRPLPSSISAL 612
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 133 bits (284), Expect = 3e-029
Identities = 55/120 (45%), Positives = 77/120 (64%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI +QC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 777 EIELGNGLPDIRSTQQCLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTT 956
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LE++ +AP GS N L A++GL++GG++ IFT +F L RKP+ E
Sbjct: 957 VGRAITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKPISE 1136
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 133 bits (284), Expect = 3e-029
Identities = 55/120 (45%), Positives = 77/120 (64%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI +QC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 776 EIELGNGLPDIRSTQQCLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTT 955
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LE++ +AP GS N L A++GL++GG++ IFT +F L RKP+ E
Sbjct: 956 VGRAITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKPISE 1135
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 122 bits (262), Expect = 3e-026
Identities = 50/111 (45%), Positives = 71/111 (63%)
Frame = -1 / +1
Query: 607 DIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAI 428
DI + C+QA K GFEV++ KDLA+ P PWY +DP FS + F+ GR +TR +
Sbjct: 2260 DIRSTQPCLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTTVGRAITRTM 2439
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
V LE++ +AP GS N L A++GL++GG++ IFT +F L RKP+ E
Sbjct: 2440 VKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKPISE 2592
>gb|C73760.2|C73760 C73760 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20519_1A, mRNA sequence
Length = 427
Score = 89.5 bits (189), Expect(2) = 6e-022
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI +QC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 32 EIELGNGLPDIRSTQQCLQAAKDAGFEVIWDKDLAEDSPVPWYLPLDPSRFSLSSFRLTT 211
Query: 454 PGRIVTRAIVNTLEFLRIA 398
GR +TR +V LE++ +A
Sbjct: 212 VGRAITRTMVKALEYVGLA 268
Score = 38.6 bits (78), Expect(2) = 6e-022
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1 / +1
Query: 406 RIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLG 293
R P GS N L A++GL++GG++ IFT +F G
Sbjct: 259 RPCPQGSERVSNFLEKAAEGLVEGGKKEIFTXMYFFXG 372
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,425,873,991
Number of Sequences: 438736
Number of extensions: 79896655
Number of successful extensions: 437111
Number of sequences better than 1.0e-020: 6
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 159735467056
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)