TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591368.2.1
(543 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 137 5e-036
emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromoso... 137 5e-036
dbj|AK064250.1| Oryza sativa (japonica cultivar-group) cDNA... 137 5e-036
ref|XM_473608.1| Oryza sativa (japonica cultivar-group), p... 137 5e-036
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 124 3e-032
gb|AACV01010356.1| Oryza sativa (japonica cultivar-group) c... 124 3e-032
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 137 8e-031
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 124 6e-027
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 137 bits (294), Expect(2) = 5e-036
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = -1 / -1
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
+VKLNVSPGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R
Sbjct: 2882541 QVKLNVSPGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANR 2882362
Query: 363 PLRLSLP 343
LRLSLP
Sbjct: 2882361 QLRLSLP 2882341
Score = 96.8 bits (205), Expect(2) = 1e-022
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2 / +2
Query: 368 VAAQRSALALLCWCWRTKRRIRXXXXXXXXXXMLA*QTRNQPGSLQWNDVPGDTLSFT 541
+AAQRSAL L CWCWRTK IR MLA QTRN PGS QWNDVPGDT SFT
Sbjct: 2882366 LAAQRSALTLRCWCWRTKSWIRPSATSMVSSSMLAWQTRNHPGSRQWNDVPGDTFSFT 2882539
Score = 37.3 bits (75), Expect(2) = 5e-036
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / -2
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 2882312 SPVHWRSCRRSPRWFAP 2882262
Score = 32.7 bits (65), Expect(2) = 1e-022
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 258 WRGPSGTAATATPRGW 305
WR PSGTAAT P W
Sbjct: 2882262 WREPSGTAATGAPMDW 2882309
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
complete sequence
Length = 157734
Score = 137 bits (294), Expect(2) = 5e-036
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = -1 / -3
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
+VKLNVSPGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R
Sbjct: 15259 QVKLNVSPGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANR 15080
Query: 363 PLRLSLP 343
LRLSLP
Sbjct: 15079 QLRLSLP 15059
Score = 96.8 bits (205), Expect(2) = 1e-022
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2 / +3
Query: 368 VAAQRSALALLCWCWRTKRRIRXXXXXXXXXXMLA*QTRNQPGSLQWNDVPGDTLSFT 541
+AAQRSAL L CWCWRTK IR MLA QTRN PGS QWNDVPGDT SFT
Sbjct: 15084 LAAQRSALTLRCWCWRTKSWIRPSATSMVSSSMLAWQTRNHPGSRQWNDVPGDTFSFT 15257
Score = 37.3 bits (75), Expect(2) = 5e-036
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / -1
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 15030 SPVHWRSCRRSPRWFAP 14980
Score = 32.7 bits (65), Expect(2) = 1e-022
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 258 WRGPSGTAATATPRGW 305
WR PSGTAAT P W
Sbjct: 14980 WREPSGTAATGAPMDW 15027
>dbj|AK064250.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C04, full
insert sequence
Length = 2114
Score = 137 bits (294), Expect(2) = 5e-036
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = -1 / +3
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
+VKLNVSPGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R
Sbjct: 1383 QVKLNVSPGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANR 1562
Query: 363 PLRLSLP 343
LRLSLP
Sbjct: 1563 QLRLSLP 1583
Score = 96.8 bits (205), Expect(2) = 2e-022
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2 / -2
Query: 368 VAAQRSALALLCWCWRTKRRIRXXXXXXXXXXMLA*QTRNQPGSLQWNDVPGDTLSFT 541
+AAQRSAL L CWCWRTK IR MLA QTRN PGS QWNDVPGDT SFT
Sbjct: 1558 LAAQRSALTLRCWCWRTKSWIRPSATSMVSSSMLAWQTRNHPGSRQWNDVPGDTFSFT 1385
Score = 37.3 bits (75), Expect(2) = 5e-036
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / +1
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 1612 SPVHWRSCRRSPRWFAP 1662
Score = 32.7 bits (65), Expect(2) = 2e-022
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3 / -3
Query: 258 WRGPSGTAATATPRGW 305
WR PSGTAAT P W
Sbjct: 1662 WREPSGTAATGAPMDW 1615
>ref|XM_473608.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1452
Score = 137 bits (294), Expect(2) = 5e-036
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = -1 / +1
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
+VKLNVSPGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R
Sbjct: 1165 QVKLNVSPGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANR 1344
Query: 363 PLRLSLP 343
LRLSLP
Sbjct: 1345 QLRLSLP 1365
Score = 96.8 bits (205), Expect(2) = 2e-022
Identities = 39/58 (67%), Positives = 40/58 (68%)
Frame = +2 / -2
Query: 368 VAAQRSALALLCWCWRTKRRIRXXXXXXXXXXMLA*QTRNQPGSLQWNDVPGDTLSFT 541
+AAQRSAL L CWCWRTK IR MLA QTRN PGS QWNDVPGDT SFT
Sbjct: 1340 LAAQRSALTLRCWCWRTKSWIRPSATSMVSSSMLAWQTRNHPGSRQWNDVPGDTFSFT 1167
Score = 37.3 bits (75), Expect(2) = 5e-036
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / +2
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 1394 SPVHWRSCRRSPRWFAP 1444
Score = 32.7 bits (65), Expect(2) = 2e-022
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3 / -3
Query: 258 WRGPSGTAATATPRGW 305
WR PSGTAAT P W
Sbjct: 1444 WREPSGTAATGAPMDW 1397
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 124 bits (266), Expect(2) = 3e-032
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -1 / -1
Query: 522 PGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATRPLRLSLP 343
PGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R LRLSLP
Sbjct: 6897717 PGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANRQLRLSLP 6897538
Score = 37.3 bits (75), Expect(2) = 3e-032
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / -2
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 6897509 SPVHWRSCRRSPRWFAP 6897459
>gb|AACV01010356.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010356, whole
genome shotgun sequence
Length = 15868
Score = 124 bits (266), Expect(2) = 3e-032
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -1 / +1
Query: 522 PGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATRPLRLSLP 343
PGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R LRLSLP
Sbjct: 10354 PGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANRQLRLSLP 10533
Score = 37.3 bits (75), Expect(2) = 3e-032
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2 / +2
Query: 308 SPAPWRCCRRSPRWSTP 258
SP WR CRRSPRW P
Sbjct: 10562 SPVHWRSCRRSPRWFAP 10612
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 137 bits (294), Expect = 8e-031
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = -1 / -1
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
+VKLNVSPGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R
Sbjct: 29105793 QVKLNVSPGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANR 29105614
Query: 363 PLRLSLP 343
LRLSLP
Sbjct: 29105613 QLRLSLP 29105593
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 124 bits (266), Expect = 6e-027
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -1 / -1
Query: 522 PGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATRPLRLSLP 343
PGTSFHC EPGWFRVC+ANMDD+TMEVAL RI FVRQHQ + KAERWAA R LRLSLP
Sbjct: 26041816 PGTSFHCREPGWFRVCHANMDDETMEVALGRIHDFVRQHQQRRVKAERWAANRQLRLSLP 26041637
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,934,936,557
Number of Sequences: 438736
Number of extensions: 41915708
Number of successful extensions: 550057
Number of sequences better than 1.0e-020: 13
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 110779247274
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)