TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.2
(660 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening st... 113 2e-023
gb|AU078204.1|AU078204 AU078204 Rice panicle at ripening st... 113 2e-023
gb|CA758816.1|CA758816 BR030027000_PLATE_A05_33_035.ab1 OA ... 113 2e-023
dbj|AK120826.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-023
ref|XM_493820.1| Oryza sativa (japonica cultivar-group), p... 113 2e-023
dbj|AP000615.1| Oryza sativa (japonica cultivar-group) geno... 106 2e-021
gb|AACV01005802.1| Oryza sativa (japonica cultivar-group) c... 106 2e-021
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 106 2e-021
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 106 2e-021
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Or... 105 4e-021
>gb|AU078201.1|AU078201 AU078201 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11288_5A, mRNA sequence
Length = 394
Score = 113 bits (241), Expect = 2e-023
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = -2 / +1
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 52 SAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 231
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 232 GVRRRCMCTKPC 267
>gb|AU078204.1|AU078204 AU078204 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11809_6Z, mRNA sequence
Length = 418
Score = 113 bits (241), Expect = 2e-023
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = -2 / +2
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 35 SAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 214
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 215 GVRRRCMCTKPC 250
>gb|CA758816.1|CA758816 BR030027000_PLATE_A05_33_035.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030027000_PLATE_A05_33_035.ab1 similar to proteinase
inhibitor - rice gi|1620753|gb|AAB17095.1| (U72942)
proteinase inhibitor [Oryza sativa] [Oryza sativa
(indica cultivar-group)] gi|2829212|gb|AAC00503.1|
(AF04405..., mRNA sequence
Length = 628
Score = 113 bits (241), Expect = 2e-023
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 48 SAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 227
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 228 GVRRRCMCTKPC 263
>dbj|AK120826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E10, full
insert sequence
Length = 540
Score = 113 bits (241), Expect = 2e-023
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = -2 / +2
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 68 SAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 247
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 248 GVRRRCMCTKPC 283
>ref|XM_493820.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 246
Score = 113 bits (241), Expect = 2e-023
Identities = 41/72 (56%), Positives = 53/72 (73%)
Frame = -2 / +1
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 25 SAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 204
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 205 GVRRRCMCTKPC 240
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
clone:P0043E01
Length = 154128
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 106866 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 107045
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 107046 GVRRRCMCTKPC 107081
>gb|AACV01005802.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005802, whole
genome shotgun sequence
Length = 13403
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / -3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 11205 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 11026
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 11025 GVRRRCMCTKPC 10990
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 106866 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 107045
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 107046 GVRRRCMCTKPC 107081
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 1703460 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 1703639
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 1703640 GVRRRCMCTKPC 1703675
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +2
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 1895822 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 1896001
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 1896002 GVRRRCMCTKPC 1896037
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +1
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 1694401 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 1694580
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 1694581 GVRRRCMCTKPC 1694616
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 106 bits (227), Expect = 2e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+++ L+++ G GGPV + AR CESQS RFKGPC+R ANCA+VC TEGF G C
Sbjct: 1694403 SSVPFLIVVGSIAGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCH 1694582
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 1694583 GVRRRCMCTKPC 1694618
>gb|C20129.1|C20129 C20129 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11560_1A, mRNA sequence
Length = 307
Score = 105 bits (225), Expect = 4e-021
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2 / +3
Query: 344 ATIVVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCK 165
+ +++++LL+ TG GGPV + AR CESQS RFKGPC+R AN A C TEGF G C
Sbjct: 48 SAMLLMVLLLAXTGEMGGPVMVAEARTCESQSHRFKGPCARKANFATYCNTEGFPDGYCH 227
Query: 164 GLRHRCFCTRDC 129
G+R RC CT+ C
Sbjct: 228 GVRRRCMCTKPC 263
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,334,040,669
Number of Sequences: 438736
Number of extensions: 64647878
Number of successful extensions: 359039
Number of sequences better than 1.0e-020: 21
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 145214060960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)