TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 148 5e-048
dbj|AP005072.3| Oryza sativa (japonica cultivar-group) geno... 148 5e-048
dbj|AP005289.2| Oryza sativa (japonica cultivar-group) geno... 148 5e-048
gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) c... 148 5e-048
dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA... 148 5e-048
ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA 148 5e-048
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 148 8e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 148 8e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 148 8e-034
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 115 1e-033
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 115 2e-033
ref|XM_473434.1| Oryza sativa (japonica cultivar-group), p... 115 2e-033
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 112 2e-029
gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) c... 112 3e-029
ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA 75 1e-027
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 79 7e-027
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 79 2e-026
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 79 2e-026
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 79 2e-026
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 79 2e-026
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 79 2e-026
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 79 2e-026
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 79 2e-026
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 76 2e-025
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 76 2e-025
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 75 3e-025
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 75 3e-025
gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) c... 75 3e-025
dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA... 75 4e-025
gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library O... 116 8e-025
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 73 4e-024
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 73 4e-024
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 73 4e-024
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 73 4e-024
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 73 4e-024
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 115 7e-024
gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (j... 73 8e-024
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 62 9e-024
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 62 9e-024
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 62 9e-024
gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) c... 69 1e-023
dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA... 69 1e-023
dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA... 69 1e-023
ref|NM_197701.1| Oryza sativa (japonica cultivar-group) bet... 69 1e-023
dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA... 69 1e-023
dbj|AK070972.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-023
dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA... 69 1e-023
dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA... 69 3e-023
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 112 5e-023
gb|AU163761.1|AU163761 AU163761 Rice panicle at ripening st... 78 3e-022
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-021
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 62 1e-021
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 62 1e-021
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 62 2e-021
gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonic... 69 1e-020
gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pi... 69 1e-020
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +3
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 1833495 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 1833674
Query: 454 S*L 446
S*+
Sbjct: 1833675 S*I 1833683
Score = 118 bits (252), Expect(2) = 2e-027
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 1833676 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 1833497
Score = 75.3 bits (158), Expect(3) = 8e-028
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -3 / +3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
L+AP S+RLTS SGR LVA+NVIPAGW PG TYRS+VN+
Sbjct: 1823349 LQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTYRSIVNF 1823465
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 1833405 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 1833494
Score = 50.1 bits (103), Expect(3) = 8e-028
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAG 644
SN +YL VL+E EDGDGDLSAV LM++G
Sbjct: 1823184 SNQYYLAVLVEDEDGDGDLSAVDLMQSG 1823267
Score = 40.0 bits (81), Expect(3) = 8e-028
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +3
Query: 646 GCGTWTPMVQNWGALWRYNS 587
G G+W M Q+WGA+W+YNS
Sbjct: 1823277 GGGSWAAMQQSWGAVWKYNS 1823336
Score = 28.1 bits (55), Expect(2) = 2e-027
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3 / -2
Query: 639 PHPASMRWTALRXXXXXXXXXXXXK*NG 722
P PAS+R TALR K*NG
Sbjct: 1833493 PQPASIRSTALRSPSPSSNSMSTSK*NG 1833410
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0708H12
Length = 162381
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 30526 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 30705
Query: 454 S*L 446
S*+
Sbjct: 30706 S*I 30714
Score = 118 bits (252), Expect(2) = 2e-027
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 30707 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 30528
Score = 75.3 bits (158), Expect(3) = 9e-028
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
L+AP S+RLTS SGR LVA+NVIPAGW PG TYRS+VN+
Sbjct: 20380 LQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTYRSIVNF 20496
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 30436 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 30525
Score = 50.1 bits (103), Expect(3) = 9e-028
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAG 644
SN +YL VL+E EDGDGDLSAV LM++G
Sbjct: 20215 SNQYYLAVLVEDEDGDGDLSAVDLMQSG 20298
Score = 40.0 bits (81), Expect(3) = 9e-028
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNS 587
G G+W M Q+WGA+W+YNS
Sbjct: 20308 GGGSWAAMQQSWGAVWKYNS 20367
Score = 28.1 bits (55), Expect(2) = 2e-027
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3 / -2
Query: 639 PHPASMRWTALRXXXXXXXXXXXXK*NG 722
P PAS+R TALR K*NG
Sbjct: 30524 PQPASIRSTALRSPSPSSNSMSTSK*NG 30441
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_F09
Length = 139371
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +3
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 102657 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 102836
Query: 454 S*L 446
S*+
Sbjct: 102837 S*I 102845
Score = 118 bits (252), Expect(3) = 2e-027
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -3
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 102838 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 102659
Score = 75.3 bits (158), Expect(3) = 9e-028
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -3 / +3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
L+AP S+RLTS SGR LVA+NVIPAGW PG TYRS+VN+
Sbjct: 92511 LQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTYRSIVNF 92627
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 102567 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 102656
Score = 50.1 bits (103), Expect(3) = 9e-028
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAG 644
SN +YL VL+E EDGDGDLSAV LM++G
Sbjct: 92346 SNQYYLAVLVEDEDGDGDLSAVDLMQSG 92429
Score = 40.0 bits (81), Expect(3) = 9e-028
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +3
Query: 646 GCGTWTPMVQNWGALWRYNS 587
G G+W M Q+WGA+W+YNS
Sbjct: 92439 GGGSWAAMQQSWGAVWKYNS 92498
Score = 35.0 bits (70), Expect(3) = 2e-027
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2 / -2
Query: 638 AAPGLHEVDGAEVAVAVLELDEHLQV 715
AA LHEV +VAVAVL LD+H +V
Sbjct: 92435 AAAALHEVHRRQVAVAVLVLDQHGEV 92358
Score = 29.5 bits (58), Expect(3) = 2e-027
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 191 TSLGDCRDRGG 223
TSLG+CRDRGG
Sbjct: 103053 TSLGECRDRGG 103021
>gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005076, whole
genome shotgun sequence
Length = 21571
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +2
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 12356 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 12535
Query: 454 S*L 446
S*+
Sbjct: 12536 S*I 12544
Score = 118 bits (252), Expect(3) = 4e-029
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 12537 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 12358
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 12266 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 12355
Score = 58.8 bits (122), Expect(3) = 6e-023
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPG 482
L+AP S+RLTS SGR LVA+NVIPAGW PG
Sbjct: 2209 LQAPMSIRLTSGSGRTLVASNVIPAGWQPG 2298
Score = 50.1 bits (103), Expect(3) = 6e-023
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAG 644
SN +YL VL+E EDGDGDLSAV LM++G
Sbjct: 2044 SNQYYLAVLVEDEDGDGDLSAVDLMQSG 2127
Score = 40.0 bits (81), Expect(3) = 6e-023
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNS 587
G G+W M Q+WGA+W+YNS
Sbjct: 2137 GGGSWAAMQQSWGAVWKYNS 2196
Score = 35.0 bits (70), Expect(3) = 4e-029
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2 / -2
Query: 638 AAPGLHEVDGAEVAVAVLELDEHLQV 715
AA LHEV +VAVAVL LD+H +V
Sbjct: 2133 AAAALHEVHRRQVAVAVLVLDQHGEV 2056
Score = 29.5 bits (58), Expect(3) = 4e-029
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -3
Query: 191 TSLGDCRDRGG 223
TSLG+CRDRGG
Sbjct: 12752 TSLGECRDRGG 12720
>dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B01, full
insert sequence
Length = 1378
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 799 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 978
Query: 454 S*L 446
S*+
Sbjct: 979 S*I 987
Score = 118 bits (252), Expect(4) = 1e-030
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -3
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 980 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 801
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 709 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 798
Score = 29.5 bits (58), Expect(4) = 1e-030
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 191 TSLGDCRDRGG 223
TSLG+CRDRGG
Sbjct: 1195 TSLGECRDRGG 1163
Score = 28.1 bits (55), Expect(4) = 1e-030
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3 / -3
Query: 639 PHPASMRWTALRXXXXXXXXXXXXK*NG 722
P PAS+R TALR K*NG
Sbjct: 797 PQPASIRSTALRSPSPSSNSMSTSK*NG 714
Score = 22.6 bits (43), Expect(4) = 1e-030
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 74 SERIAWYRK 100
SER AWY+K
Sbjct: 1359 SERFAWYKK 1333
>ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1378
Score = 148 bits (317), Expect(2) = 5e-048
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 799 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 978
Query: 454 S*L 446
S*+
Sbjct: 979 S*I 987
Score = 118 bits (252), Expect(4) = 1e-030
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -3
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 980 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 801
Score = 67.5 bits (141), Expect(2) = 5e-048
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
+NPFY EVLIEFEDGDGDL+AV LMEAGCG
Sbjct: 709 ANPFYFEVLIEFEDGDGDLNAVDLMEAGCG 798
Score = 29.5 bits (58), Expect(4) = 1e-030
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 191 TSLGDCRDRGG 223
TSLG+CRDRGG
Sbjct: 1195 TSLGECRDRGG 1163
Score = 28.1 bits (55), Expect(4) = 1e-030
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3 / -3
Query: 639 PHPASMRWTALRXXXXXXXXXXXXK*NG 722
P PAS+R TALR K*NG
Sbjct: 797 PQPASIRSTALRSPSPSSNSMSTSK*NG 714
Score = 22.6 bits (43), Expect(4) = 1e-030
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 74 SERIAWYRK 100
SER AWY+K
Sbjct: 1359 SERFAWYKK 1333
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 148 bits (317), Expect = 8e-034
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +2
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 13122716 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 13122895
Query: 454 S*L 446
S*+
Sbjct: 13122896 S*I 13122904
Score = 118 bits (252), Expect = 8e-025
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 13122897 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 13122718
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 148 bits (317), Expect = 8e-034
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 26575780 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 26575959
Query: 454 S*L 446
S*+
Sbjct: 26575960 S*I 26575968
Score = 118 bits (252), Expect = 8e-025
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 26575961 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 26575782
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 148 bits (317), Expect = 8e-034
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3 / +2
Query: 634 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNY
Sbjct: 26668496 WTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNY 26668675
Query: 454 S*L 446
S*+
Sbjct: 26668676 S*I 26668684
Score = 118 bits (252), Expect = 8e-025
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +3 / -2
Query: 453 E*FTKERYVAPGFQPAGMTLLATSTLPESEVSRSEKGAFSALPVLEL*RQSAPQFCTIGV 632
E*FT+ERYV PGFQ AGMTL ATSTLPESEV RSE GAF ALPVLEL RQSAPQFCTIGV
Sbjct: 26668677 E*FTRERYVTPGFQLAGMTLFATSTLPESEVRRSENGAFRALPVLELYRQSAPQFCTIGV 26668498
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 115 bits (245), Expect(2) = 1e-033
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 1406539 GGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 1406718
Query: 466 LVNYS 452
VNY+
Sbjct: 1406719 TVNYA 1406733
Score = 75.8 bits (159), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
N G AL+APFS+RLTS SG+ LVA+NVIP+GW PG +Y S VN+
Sbjct: 1396981 NAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYISTVNF 1397112
Score = 51.9 bits (107), Expect(2) = 1e-033
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP+YL +L+++ +GDGDL+AVH+MEA G
Sbjct: 1406455 SNPYYLAILVQYANGDGDLAAVHIMEARGG 1406544
Score = 48.7 bits (100), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS V LM+ G G
Sbjct: 1396843 SNPNYFAVLVKYENGDGDLSGVELMQTGAG 1396932
Score = 33.1 bits (66), Expect(3) = 2e-025
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNT 581
WT M Q+WGA+W+ N+ +
Sbjct: 1396939 WTQMQQSWGAVWKLNAGS 1396992
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 115 bits (245), Expect(2) = 2e-033
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = -3 / +2
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 60518 GGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 60697
Query: 466 LVNYS 452
VNY+
Sbjct: 60698 TVNYA 60712
Score = 75.8 bits (159), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / +2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
N G AL+APFS+RLTS SG+ LVA+NVIP+GW PG +Y S VN+
Sbjct: 50960 NAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYISTVNF 51091
Score = 51.9 bits (107), Expect(2) = 2e-033
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP+YL +L+++ +GDGDL+AVH+MEA G
Sbjct: 60434 SNPYYLAILVQYANGDGDLAAVHIMEARGG 60523
Score = 48.7 bits (100), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS V LM+ G G
Sbjct: 50822 SNPNYFAVLVKYENGDGDLSGVELMQTGAG 50911
Score = 33.1 bits (66), Expect(3) = 2e-025
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +2
Query: 634 WTPMVQNWGALWRYNSNT 581
WT M Q+WGA+W+ N+ +
Sbjct: 50918 WTQMQQSWGAVWKLNAGS 50971
>ref|XM_473434.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 115 bits (245), Expect(2) = 2e-033
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 628 GGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 807
Query: 466 LVNYS 452
VNY+
Sbjct: 808 TVNYA 822
Score = 51.9 bits (107), Expect(2) = 2e-033
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP+YL +L+++ +GDGDL+AVH+MEA G
Sbjct: 544 SNPYYLAILVQYANGDGDLAAVHIMEARGG 633
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 112 bits (239), Expect(2) = 2e-029
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 5456296 GGAGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 5456475
Query: 466 LVNYS 452
VNY+
Sbjct: 5456476 TVNYA 5456490
Score = 75.8 bits (159), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
N G AL+APFS+RLTS SG+ LVA+NVIP+GW PG +Y S VN+
Sbjct: 5434546 NAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYISTVNF 5434677
Score = 48.7 bits (100), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS V LM+ G G
Sbjct: 5434408 SNPNYFAVLVKYENGDGDLSGVELMQTGAG 5434497
Score = 40.5 bits (82), Expect(2) = 2e-029
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAV 662
SNP+YL +L+++ +GDGDL+AV
Sbjct: 5456210 SNPYYLAILVQYANGDGDLAAV 5456275
Score = 33.1 bits (66), Expect(3) = 2e-025
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNT 581
WT M Q+WGA+W+ N+ +
Sbjct: 5434504 WTQMQQSWGAVWKLNAGS 5434557
>gb|AACV01010249.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010249, whole
genome shotgun sequence
Length = 24047
Score = 112 bits (239), Expect(2) = 3e-029
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = -3 / +2
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 20540 GGAGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 20719
Query: 466 LVNYS 452
VNY+
Sbjct: 20720 TVNYA 20734
Score = 40.5 bits (82), Expect(2) = 3e-029
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAV 662
SNP+YL +L+++ +GDGDL+AV
Sbjct: 20454 SNPYYLAILVQYANGDGDLAAV 20519
>ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 822
Score = 75.3 bits (158), Expect(3) = 1e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
L+AP S+RLTS SGR LVA+NVIPAGW PG TYRS+VN+
Sbjct: 691 LQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTYRSIVNF 807
Score = 50.1 bits (103), Expect(3) = 1e-027
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAG 644
SN +YL VL+E EDGDGDLSAV LM++G
Sbjct: 526 SNQYYLAVLVEDEDGDGDLSAVDLMQSG 609
Score = 40.0 bits (81), Expect(3) = 1e-027
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 646 GCGTWTPMVQNWGALWRYNS 587
G G+W M Q+WGA+W+YNS
Sbjct: 619 GGGSWAAMQQSWGAVWKYNS 678
>gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022091, whole
genome shotgun sequence
Length = 36005
Score = 79.4 bits (167), Expect(2) = 7e-027
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 4330 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 4473
Score = 73.0 bits (153), Expect(2) = 7e-027
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 22230 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 22355
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / -3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 9304676 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 9304533
Score = 73.0 bits (153), Expect(3) = 3e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / -2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 9286776 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 9286651
Score = 68.9 bits (144), Expect(3) = 8e-024
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 9316689 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 9316826
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / -3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 9304526 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 9304407
Score = 45.1 bits (92), Expect(3) = 8e-024
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 9316536 SNPVYFAVLVEYEDGDGDVVQVDLMES 9316616
Score = 40.5 bits (82), Expect(3) = 3e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 9286944 SNPVYFAVLVEYEDLDGDVVQVDLMES 9286864
Score = 39.6 bits (80), Expect(3) = 3e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / -2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 9286839 GVWTPMRESWGSIWRLDSN 9286783
Score = 37.7 bits (76), Expect(3) = 8e-024
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 9316641 GRWTPMRESWGSIWRLDTN 9316697
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 3251517 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 3251374
Score = 73.0 bits (153), Expect(3) = 3e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / -1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 3233617 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 3233492
Score = 68.9 bits (144), Expect(3) = 9e-024
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 3263814 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 3263951
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / -2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 3251367 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 3251248
Score = 45.1 bits (92), Expect(3) = 9e-024
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 3263661 SNPVYFAVLVEYEDGDGDVVQVDLMES 3263741
Score = 40.5 bits (82), Expect(3) = 3e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / -1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 3233785 SNPVYFAVLVEYEDLDGDVVQVDLMES 3233705
Score = 39.6 bits (80), Expect(3) = 3e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / -1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 3233680 GVWTPMRESWGSIWRLDSN 3233624
Score = 37.7 bits (76), Expect(3) = 9e-024
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 3263766 GRWTPMRESWGSIWRLDTN 3263822
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence,
complete sequence
Length = 147117
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 4337 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 4194
Score = 68.9 bits (144), Expect(3) = 9e-024
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 16633 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 16770
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / -2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 4187 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 4068
Score = 45.1 bits (92), Expect(3) = 9e-024
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 16480 SNPVYFAVLVEYEDGDGDVVQVDLMES 16560
Score = 37.7 bits (76), Expect(3) = 9e-024
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 16585 GRWTPMRESWGSIWRLDTN 16641
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence,
complete sequence
Length = 135510
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 5036 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 5179
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 22936 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 23061
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 5186 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 5305
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 22768 SNPVYFAVLVEYEDLDGDVVQVDLMES 22848
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 22873 GVWTPMRESWGSIWRLDSN 22929
>dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O05, full
insert sequence
Length = 1313
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 640 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 783
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 790 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 909
>dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F11, full
insert sequence
Length = 1031
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 384 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 527
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / +3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 534 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 653
>ref|NM_197700.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB3
(OSJNBb0014I11.1), mRNA
Length = 904
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/48 (58%), Positives = 37/48 (77%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
SNP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 629 SNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 772
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L APFSLR+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 779 LTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 898
>gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010248, whole
genome shotgun sequence
Length = 37264
Score = 75.8 bits (159), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / -2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
N G AL+APFS+RLTS SG+ LVA+NVIP+GW PG +Y S VN+
Sbjct: 1161 NAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYISTVNF 1030
Score = 48.7 bits (100), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS V LM+ G G
Sbjct: 1299 SNPNYFAVLVKYENGDGDLSGVELMQTGAG 1210
Score = 33.1 bits (66), Expect(3) = 2e-025
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / -2
Query: 634 WTPMVQNWGALWRYNSNT 581
WT M Q+WGA+W+ N+ +
Sbjct: 1203 WTQMQQSWGAVWKLNAGS 1150
>ref|XM_473433.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 795
Score = 75.8 bits (159), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
N G AL+APFS+RLTS SG+ LVA+NVIP+GW PG +Y S VN+
Sbjct: 661 NAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSYISTVNF 792
Score = 48.7 bits (100), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS V LM+ G G
Sbjct: 523 SNPNYFAVLVKYENGDGDLSGVELMQTGAG 612
Score = 33.1 bits (66), Expect(3) = 2e-025
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNSNT 581
WT M Q+WGA+W+ N+ +
Sbjct: 619 WTQMQQSWGAVWKLNAGS 672
>gb|CH401195.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000032 genomic
scaffold, whole genome shotgun sequence
Length = 1766531
Score = 75.3 bits (158), Expect(3) = 3e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / -2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
+ G AL+AP S+RLTS SG+ LVA+NVIP+GW PGA+Y S VNY
Sbjct: 1012765 SAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYTSTVNY 1012634
Score = 47.3 bits (97), Expect(3) = 3e-025
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS + LM+ G G
Sbjct: 1012903 SNPSYFAVLVKYENGDGDLSGMDLMQTGAG 1012814
Score = 34.1 bits (68), Expect(3) = 3e-025
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 634 WTPMVQNWGALWRYNS 587
WTPM Q+WGA+W+ ++
Sbjct: 1012807 WTPMQQSWGAVWKLSA 1012760
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06,
complete sequence
Length = 144457
Score = 75.3 bits (158), Expect(3) = 3e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / -2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
+ G AL+AP S+RLTS SG+ LVA+NVIP+GW PGA+Y S VNY
Sbjct: 102930 SAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYTSTVNY 102799
Score = 47.3 bits (97), Expect(3) = 3e-025
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS + LM+ G G
Sbjct: 103068 SNPSYFAVLVKYENGDGDLSGMDLMQTGAG 102979
Score = 34.1 bits (68), Expect(3) = 3e-025
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 634 WTPMVQNWGALWRYNS 587
WTPM Q+WGA+W+ ++
Sbjct: 102972 WTPMQQSWGAVWKLSA 102925
>gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011389, whole
genome shotgun sequence
Length = 22266
Score = 75.3 bits (158), Expect(3) = 3e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / -3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
+ G AL+AP S+RLTS SG+ LVA+NVIP+GW PGA+Y S VNY
Sbjct: 3790 SAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYTSTVNY 3659
Score = 47.3 bits (97), Expect(3) = 3e-025
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3 / -3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS + LM+ G G
Sbjct: 3928 SNPSYFAVLVKYENGDGDLSGMDLMQTGAG 3839
Score = 34.1 bits (68), Expect(3) = 3e-025
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3 / -3
Query: 634 WTPMVQNWGALWRYNS 587
WTPM Q+WGA+W+ ++
Sbjct: 3832 WTPMQQSWGAVWKLSA 3785
>dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full
insert sequence
Length = 1250
Score = 75.3 bits (158), Expect(3) = 4e-025
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNY 455
+ G AL+AP S+RLTS SG+ LVA+NVIP+GW PGA+Y S VNY
Sbjct: 760 SAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYTSTVNY 891
Score = 47.3 bits (97), Expect(3) = 4e-025
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
SNP Y VL+++E+GDGDLS + LM+ G G
Sbjct: 622 SNPSYFAVLVKYENGDGDLSGMDLMQTGAG 711
Score = 34.1 bits (68), Expect(3) = 4e-025
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3 / +1
Query: 634 WTPMVQNWGALWRYNS 587
WTPM Q+WGA+W+ ++
Sbjct: 718 WTPMQQSWGAVWKLSA 765
>gb|AQ259290.1|AQ259290 nbxb0022M06f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0022M06f, DNA sequence
Length = 595
Score = 116 bits (248), Expect(2) = 8e-025
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = -3 / -2
Query: 613 WGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
+G LWR NSN+GKALKAPFSLRLTSDSG+VLVANNVIPA W PG TYRSLVNYS*+
Sbjct: 456 YGGLWRCNSNSGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNYS*I 289
Score = 23.1 bits (44), Expect(2) = 8e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / -2
Query: 224 SLHGLCSHLVM 192
SLHGLC LVM
Sbjct: 114 SLHGLCIPLVM 82
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
insert sequence
Length = 1263
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 821 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 946
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 653 SNPVYFAVLVEYEDLDGDVVQVDLMES 733
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 758 GVWTPMRESWGSIWRLDSN 814
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
insert sequence
Length = 1259
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 815 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 940
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 647 SNPVYFAVLVEYEDLDGDVVQVDLMES 727
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 752 GVWTPMRESWGSIWRLDSN 808
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
insert sequence
Length = 1257
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 815 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 940
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 647 SNPVYFAVLVEYEDLDGDVVQVDLMES 727
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 752 GVWTPMRESWGSIWRLDSN 808
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
insert sequence
Length = 1257
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 815 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 940
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 647 SNPVYFAVLVEYEDLDGDVVQVDLMES 727
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 752 GVWTPMRESWGSIWRLDSN 808
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
(OSJNBb0014I11.3), mRNA
Length = 1240
Score = 73.0 bits (153), Expect(3) = 4e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 802 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 927
Score = 40.5 bits (82), Expect(3) = 4e-024
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD+ V LME+
Sbjct: 634 SNPVYFAVLVEYEDLDGDVVQVDLMES 714
Score = 39.6 bits (80), Expect(3) = 4e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 739 GVWTPMRESWGSIWRLDSN 795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 115 bits (245), Expect = 7e-024
Identities = 45/65 (69%), Positives = 50/65 (76%)
Frame = -3 / +3
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 27629889 GGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 27630068
Query: 466 LVNYS 452
VNY+
Sbjct: 27630069 TVNYA 27630083
>gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61589, mRNA sequence
Length = 710
Score = 73.0 bits (153), Expect(3) = 8e-024
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = -3 / +3
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*L 446
L+APFSLR+ SDSG+ LVANNVIPA W+P + YRS+V +S*+
Sbjct: 255 LQAPFSLRIRSDSGKTLVANNVIPANWSPNSNYRSIVQFS*I 380
Score = 39.6 bits (80), Expect(3) = 8e-024
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR +SN
Sbjct: 192 GVWTPMRESWGSIWRLDSN 248
Score = 39.6 bits (80), Expect(3) = 8e-024
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+ED DGD V LME+
Sbjct: 87 SNPVYFAVLVEYEDLDGDXVQVDLMES 167
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 62.5 bits (130), Expect(3) = 1e-021
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*LM 443
+T L+ PFSLR+T++SG+ L+A+ VIPA W P Y S+V + *L+
Sbjct: 169293 DTNHPLQGPFSLRITNESGKTLIADQVIPADWQPNTVYSSIVQFD*LI 169436
Score = 62.0 bits (129), Expect(3) = 9e-024
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -3 / -1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L+APFS+R+ SDSG+ LVA +VIP W P YRS V YS
Sbjct: 157782 LRAPFSIRIRSDSGKTLVAPDVIPLNWTPNTFYRSFVQYS 157663
Score = 47.8 bits (98), Expect(3) = 9e-024
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -3 / -1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
S+P YL VL+E+E+GDGD++ V L EAG G
Sbjct: 157938 SSPVYLAVLVEYENGDGDVAQVDLKEAGAG 157849
Score = 43.7 bits (89), Expect(3) = 1e-021
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGT 635
SNP Y+ +L+E+E+GDGD+ V LME+ T
Sbjct: 169128 SNPVYMAILVEYENGDGDVVQVDLMESRYST 169220
Score = 41.8 bits (85), Expect(3) = 9e-024
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 649 AGCGTWTPMVQNWGALWRYNSN 584
AG G WTPM ++WG++WR +SN
Sbjct: 157854 AGGGRWTPMRESWGSVWRLDSN 157789
Score = 38.2 bits (77), Expect(3) = 1e-021
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 169245 GVWTPMRESWGSIWRLDTN 169301
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 62.5 bits (130), Expect(3) = 1e-021
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -3 / -1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*LM 443
+T L+ PFSLR+T++SG+ L+A+ VIPA W P Y S+V + *L+
Sbjct: 93373 DTNHPLQGPFSLRITNESGKTLIADQVIPADWQPNTVYSSIVQFD*LI 93230
Score = 62.0 bits (129), Expect(3) = 9e-024
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -3 / +1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L+APFS+R+ SDSG+ LVA +VIP W P YRS V YS
Sbjct: 104884 LRAPFSIRIRSDSGKTLVAPDVIPLNWTPNTFYRSFVQYS 105003
Score = 47.8 bits (98), Expect(3) = 9e-024
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
S+P YL VL+E+E+GDGD++ V L EAG G
Sbjct: 104728 SSPVYLAVLVEYENGDGDVAQVDLKEAGAG 104817
Score = 43.7 bits (89), Expect(3) = 1e-021
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3 / -1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGT 635
SNP Y+ +L+E+E+GDGD+ V LME+ T
Sbjct: 93538 SNPVYMAILVEYENGDGDVVQVDLMESRYST 93446
Score = 41.8 bits (85), Expect(3) = 9e-024
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3 / +1
Query: 649 AGCGTWTPMVQNWGALWRYNSN 584
AG G WTPM ++WG++WR +SN
Sbjct: 104812 AGGGRWTPMRESWGSVWRLDSN 104877
Score = 38.2 bits (77), Expect(3) = 1e-021
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / -1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 93421 GVWTPMRESWGSIWRLDTN 93365
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 62.5 bits (130), Expect(3) = 1e-021
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS*LM 443
+T L+ PFSLR+T++SG+ L+A+ VIPA W P Y S+V + *L+
Sbjct: 103293 DTNHPLQGPFSLRITNESGKTLIADQVIPADWQPNTVYSSIVQFD*LI 103436
Score = 62.0 bits (129), Expect(3) = 9e-024
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -3 / -1
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L+APFS+R+ SDSG+ LVA +VIP W P YRS V YS
Sbjct: 91782 LRAPFSIRIRSDSGKTLVAPDVIPLNWTPNTFYRSFVQYS 91663
Score = 47.8 bits (98), Expect(3) = 9e-024
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -3 / -1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
S+P YL VL+E+E+GDGD++ V L EAG G
Sbjct: 91938 SSPVYLAVLVEYENGDGDVAQVDLKEAGAG 91849
Score = 43.7 bits (89), Expect(3) = 1e-021
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGT 635
SNP Y+ +L+E+E+GDGD+ V LME+ T
Sbjct: 103128 SNPVYMAILVEYENGDGDVVQVDLMESRYST 103220
Score = 41.8 bits (85), Expect(3) = 9e-024
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3 / -1
Query: 649 AGCGTWTPMVQNWGALWRYNSN 584
AG G WTPM ++WG++WR +SN
Sbjct: 91854 AGGGRWTPMRESWGSVWRLDSN 91789
Score = 38.2 bits (77), Expect(3) = 1e-021
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 103245 GVWTPMRESWGSIWRLDTN 103301
>gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022092, whole
genome shotgun sequence
Length = 10831
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 7634 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 7771
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 7481 SNPVYFAVLVEYEDGDGDVVQVDLMES 7561
Score = 37.7 bits (76), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 7586 GRWTPMRESWGSIWRLDTN 7642
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full
insert sequence
Length = 1883
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 1421 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 1558
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 1268 SNPVYFAVLVEYEDGDGDVVQVDLMES 1348
Score = 37.7 bits (76), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 1373 GRWTPMRESWGSIWRLDTN 1429
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full
insert sequence
Length = 1475
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +2
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 1025 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 1162
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 872 SNPVYFAVLVEYEDGDGDVVQVDLMES 952
Score = 37.7 bits (76), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 977 GRWTPMRESWGSIWRLDTN 1033
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4
(OSJNBa0010C11.2), mRNA
Length = 1340
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 831 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 968
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 678 SNPVYFAVLVEYEDGDGDVVQVDLMES 758
Score = 37.7 bits (76), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 783 GRWTPMRESWGSIWRLDTN 839
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full
insert sequence
Length = 1290
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +1
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 844 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 981
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +1
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 691 SNPVYFAVLVEYEDGDGDVVQVDLMES 771
Score = 37.7 bits (76), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 796 GRWTPMRESWGSIWRLDTN 852
>dbj|AK070972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069H18, full
insert sequence
Length = 1019
Score = 62.0 bits (129), Expect(3) = 1e-023
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L+APFS+R+ SDSG+ LVA +VIP W P YRS V YS
Sbjct: 773 LRAPFSIRIRSDSGKTLVAPDVIPLNWTPNTFYRSFVQYS 892
Score = 47.8 bits (98), Expect(3) = 1e-023
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCG 638
S+P YL VL+E+E+GDGD++ V L EAG G
Sbjct: 617 SSPVYLAVLVEYENGDGDVAQVDLKEAGAG 706
Score = 41.8 bits (85), Expect(3) = 1e-023
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3 / +2
Query: 649 AGCGTWTPMVQNWGALWRYNSN 584
AG G WTPM ++WG++WR +SN
Sbjct: 701 AGGGRWTPMRESWGSVWRLDSN 766
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full
insert sequence
Length = 1266
Score = 68.9 bits (144), Expect(3) = 1e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 837 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 974
Score = 45.1 bits (92), Expect(3) = 1e-023
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ V LME+
Sbjct: 684 SNPVYFAVLVEYEDGDGDVVQVDLMES 764
Score = 37.3 bits (75), Expect(3) = 1e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 789 GGWTPMRESWGSIWRLDTN 845
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full
insert sequence
Length = 1293
Score = 68.9 bits (144), Expect(3) = 3e-023
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 586 NTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS* 449
+T L+APFS+R+ ++SG+ LVANNVIPA W P YRS V YS*
Sbjct: 843 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS* 980
Score = 43.7 bits (89), Expect(3) = 3e-023
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -3 / +3
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEA 647
SNP Y VL+E+EDGDGD+ + LME+
Sbjct: 690 SNPVYFAVLVEYEDGDGDVVQMDLMES 770
Score = 37.7 bits (76), Expect(3) = 3e-023
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 640 GTWTPMVQNWGALWRYNSN 584
G WTPM ++WG++WR ++N
Sbjct: 795 GRWTPMRESWGSIWRLDTN 851
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 112 bits (239), Expect = 5e-023
Identities = 44/65 (67%), Positives = 49/65 (75%)
Frame = -3 / +2
Query: 646 GCGTWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRS 467
G W M Q+WGA WR NSNTGK L PFS+RLTS SG+VLVANNVIP+GW G TYRS
Sbjct: 24600395 GGAGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTYRS 24600574
Query: 466 LVNYS 452
VNY+
Sbjct: 24600575 TVNYA 24600589
>gb|AU163761.1|AU163761 AU163761 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10926, mRNA sequence
Length = 711
Score = 77.6 bits (163), Expect(2) = 3e-022
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -3 / +2
Query: 724 NPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALWRYNSN 584
NP Y VL+E+EDGDGD+ V LMEA +WTPM ++WG++WR +SN
Sbjct: 59 NPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSN 199
Score = 51.5 bits (106), Expect(2) = 3e-022
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = -3 / +3
Query: 553 LRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
+R+T++SG+ LVA+ VIPA W P A YRS V YS
Sbjct: 222 VRITNESGKQLVASQVIPANWAPMAVYRSFVQYS 323
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,036,951,257
Number of Sequences: 438736
Number of extensions: 57921401
Number of successful extensions: 306801
Number of sequences better than 1.0e-020: 73
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 166088582223
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)