TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF326545.1|CF326545 JMT1--06-F17.g1 AtJMT-overexpressing... 149 8e-035
dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA... 149 8e-035
ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA 149 8e-035
gb|CV726362.1|CV726362 14Salt--03-P05.b1 Salt treated rice ... 149 8e-035
gb|CV726254.1|CV726254 14Salt--03-M18.b1 Salt treated rice ... 149 8e-035
gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature lea... 149 8e-035
gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Ory... 149 8e-035
gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature lea... 146 8e-034
gb|AU030016.2|AU030016 AU030016 Rice cDNA from immature lea... 144 2e-033
gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare imm... 140 3e-032
gb|AU030034.1|AU030034 AU030034 Rice cDNA from immature lea... 137 4e-032
gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature lea... 139 5e-032
gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature lea... 77 2e-030
gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature lea... 77 2e-030
gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature lea... 77 3e-030
gb|AU065648.2|AU065648 AU065648 Rice cDNA from immature lea... 77 3e-030
dbj|AP004889.1| Oryza sativa (japonica cultivar-group) chro... 135 5e-030
dbj|AP006168.3| Oryza sativa (japonica cultivar-group) geno... 135 5e-030
gb|AACV01004969.1| Oryza sativa (japonica cultivar-group) c... 135 5e-030
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 135 5e-030
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-030
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-030
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 135 5e-030
gb|AU078210.1|AU078210 AU078210 Rice panicle shorter than 3... 130 2e-029
gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature lea... 77 5e-029
gb|AU030229.1|AU030229 AU030229 Rice cDNA from immature lea... 131 7e-029
gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature lea... 129 2e-028
gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature lea... 122 4e-027
gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Ory... 73 9e-026
ref|XM_473224.1| Oryza sativa (japonica cultivar-group), p... 117 9e-025
gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature lea... 75 4e-024
gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature lea... 111 8e-024
gb|AACV01010142.1| Oryza sativa (japonica cultivar-group) c... 111 6e-023
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 111 6e-023
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-023
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-023
emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromoso... 111 6e-023
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 111 6e-023
gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature lea... 110 2e-022
gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature lea... 74 5e-021
gb|AU065599.2|AU065599 AU065599 Rice cDNA from immature lea... 75 1e-020
>gb|CF326545.1|CF326545 JMT1--06-F17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-F17, mRNA sequence
Length = 610
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 81 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 260
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 261 PDGECKSHGLERKCFCKKVC* 323
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +2
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 149 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 328
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 329 ASPAVSAVA 355
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 38 PHHSSVSAVRVAGTDGSVSSHG 103
>dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C08, full
insert sequence
Length = 603
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 89 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 268
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 269 PDGECKSHGLERKCFCKKVC* 331
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 157 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 336
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 337 ASPAVSAVA 363
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 46 PHHSSVSAVRVAGTDGSVSSHG 111
>ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 603
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 89 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 268
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 269 PDGECKSHGLERKCFCKKVC* 331
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 157 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 336
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 337 ASPAVSAVA 363
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 46 PHHSSVSAVRVAGTDGSVSSHG 111
>gb|CV726362.1|CV726362 14Salt--03-P05.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-P05, mRNA sequence
Length = 493
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 92 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 271
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 272 PDGECKSHGLERKCFCKKVC* 334
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 160 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 339
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 340 ASPAVSAVA 366
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 49 PHHSSVSAVRVAGTDGSVSSHG 114
>gb|CV726254.1|CV726254 14Salt--03-M18.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--03-M18, mRNA sequence
Length = 490
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 92 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 271
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 272 PDGECKSHGLERKCFCKKVC* 334
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 160 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 339
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 340 ASPAVSAVA 366
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 49 PHHSSVSAVRVAGTDGSVSSHG 114
>gb|AU078247.1|AU078247 AU078247 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61767_1A, mRNA sequence
Length = 475
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 77 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 256
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 257 PDGECKSHGLERKCFCKKVC* 319
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 145 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 324
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 325 ASPAVSAVA 351
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 34 PHHSSVSAVRVAGTDGSVSSHG 99
>gb|C74088.1|C74088 C74088 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30363_1A, mRNA sequence
Length = 465
Score = 149 bits (319), Expect(2) = 8e-035
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = -2 / +1
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+F
Sbjct: 55 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 234
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 235 PDGECKSHGLERKCFCKKVC* 297
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +3
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 123 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 302
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 303 ASPAVSAVA 329
Score = 22.1 bits (42), Expect(2) = 8e-035
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +3
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 12 PHHSSVSAVRVAGTDGSVSSHG 77
>gb|AU030986.1|AU030986 AU030986 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60529_2Z, mRNA sequence
Length = 591
Score = 146 bits (314), Expect(2) = 8e-034
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = -2 / +1
Query: 541 ALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFP 362
A SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP
Sbjct: 64 APSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFP 243
Query: 361 GGECKAEGATRKCFCKKIC* 302
GECK+ G RKCFCKK+C*
Sbjct: 244 DGECKSHGLERKCFCKKVC* 303
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +3
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 129 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 308
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 309 ASPAVSAVA 335
Score = 22.6 bits (43), Expect(2) = 8e-034
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 517 ASCCHVRFHISALMNWHT**KKKKK 591
>gb|AU030016.2|AU030016 AU030016 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50501_2Z, mRNA sequence
Length = 708
Score = 144 bits (309), Expect(2) = 2e-033
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = -2 / +1
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTT VAEARHCLSQSHRFKG+C+S NNCANVC+TE+F
Sbjct: 163 MAPSRRMVASAFLLLAILVATEMGTTXVAEARHCLSQSHRFKGMCVSXNNCANVCRTESF 342
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 343 PDGECKSHGLERKCFCKKVC* 405
Score = 24.0 bits (46), Expect(2) = 2e-033
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 619 ASCCHVRFHISALMNWXTX*KKKKK 693
>gb|AU058417.1|AU058417 AU058417 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E51109_1A, mRNA
sequence
Length = 421
Score = 140 bits (300), Expect(2) = 3e-032
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+ + CANVC+TE+F
Sbjct: 69 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVXATTCANVCRTESF 248
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 249 PDGECKSHGLERKCFCKKVC* 311
Score = 22.1 bits (42), Expect(2) = 3e-032
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 26 PHHSSVSAVRVAGTDGSVSSHG 91
>gb|AU030034.1|AU030034 AU030034 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50527_2Z, mRNA sequence
Length = 713
Score = 137 bits (293), Expect(3) = 4e-032
Identities = 56/81 (69%), Positives = 63/81 (77%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA RRM A ATE+GTTKVAEARH LSQSHRFKG+C+SSNNCANV +TE+F
Sbjct: 153 MAPXRRMVASAFLXLAILXATEMGTTKVAEARHXLSQSHRFKGMCVSSNNCANVXRTESF 332
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 333 PDGECKSHGLERKCFCKKVC* 395
Score = 24.0 bits (46), Expect(3) = 4e-032
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +3
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 609 ASCCHVRFXISALMNWXTX*KKKKK 683
Score = 21.7 bits (41), Expect(3) = 4e-032
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 110 PHHXSVSAVRVAGTDGSVSSHG 175
>gb|AU031270.1|AU031270 AU031270 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_3A, mRNA sequence
Length = 346
Score = 139 bits (298), Expect(2) = 5e-032
Identities = 55/78 (70%), Positives = 62/78 (79%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+S NNCANVC+TE+F
Sbjct: 45 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSXNNCANVCRTESF 224
Query: 364 PGGECKAEGATRKCFCKK 311
P GECK+ G RKCFCK+
Sbjct: 225 PDGECKSHGLERKCFCKE 278
Score = 22.1 bits (42), Expect(2) = 5e-032
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 2 PHHSSVSAVRVAGTDGSVSSHG 67
>gb|AU078246.1|AU078246 AU078246 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61655_3A, mRNA sequence
Length = 605
Score = 76.7 bits (161), Expect(3) = 2e-030
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -2 / +1
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
+G SNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 199 QGHVRDSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 318
Score = 75.3 bits (158), Expect(3) = 2e-030
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+++
Sbjct: 77 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVTA 220
Score = 22.1 bits (42), Expect(3) = 2e-030
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 34 PHHSSVSAVRVAGTDGSVSSHG 99
>gb|AU078248.1|AU078248 AU078248 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_1A, mRNA sequence
Length = 526
Score = 76.7 bits (161), Expect(3) = 2e-030
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -2 / +1
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
+G SNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 199 QGHVRDSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 318
Score = 75.3 bits (158), Expect(3) = 2e-030
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+++
Sbjct: 77 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVTA 220
Score = 22.1 bits (42), Expect(3) = 2e-030
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +1
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 34 PHHSSVSAVRVAGTDGSVSSHG 99
>gb|AU029891.1|AU029891 AU029891 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50130_1A, mRNA sequence
Length = 358
Score = 76.7 bits (161), Expect(3) = 3e-030
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -2 / +2
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
+G SNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 200 QGHVRXSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 319
Score = 74.4 bits (156), Expect(3) = 3e-030
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCM 407
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+
Sbjct: 78 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCV 215
Score = 22.1 bits (42), Expect(3) = 3e-030
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 35 PHHSSVSAVRVAGTDGSVSSHG 100
>gb|AU065648.2|AU065648 AU065648 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50787_1A, mRNA sequence
Length = 364
Score = 76.7 bits (161), Expect(3) = 3e-030
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -2 / +2
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
+G SNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 191 QGHVRXSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 310
Score = 74.8 bits (157), Expect(3) = 3e-030
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+ +
Sbjct: 69 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVXA 212
Score = 22.1 bits (42), Expect(3) = 3e-030
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +2
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 26 PHHSSVSAVRVAGTDGSVSSHG 91
>dbj|AP004889.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0661A05, ***
SEQUENCING IN PROGRESS ***
Length = 144581
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 128614 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 128793
Score = 120 bits (257), Expect = 1e-025
Identities = 43/60 (71%), Positives = 52/60 (86%)
Frame = -2 / +1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
++G T+V ARHCLSQSHRFKG+C+SSNNCANVC+ E+FP GECK +G RKCFCKK+C*
Sbjct: 130003 KMGPTRVPRARHCLSQSHRFKGMCVSSNNCANVCRRESFPDGECKWQGFERKCFCKKVC* 130182
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +3
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 128619 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 128798
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 128799 ASPAVSAVA 128825
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1469H02
Length = 136602
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 109623 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 109802
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +2
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 109628 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 109807
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 109808 ASPAVSAVA 109834
>gb|AACV01004969.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004969, whole
genome shotgun sequence
Length = 9711
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / -3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 4378 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 4199
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / -2
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 4373 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 4194
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 4193 ASPAVSAVA 4167
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 374229 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 374408
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +2
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 374234 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 374413
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 374414 ASPAVSAVA 374440
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 11543314 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 11543493
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +3
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 11543319 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 11543498
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 11543499 ASPAVSAVA 11543525
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 24996378 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 24996557
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +2
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 24996383 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 24996562
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 24996563 ASPAVSAVA 24996589
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 135 bits (289), Expect = 5e-030
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2 / +2
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTKVAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 25209230 EMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 25209409
Score = 107 bits (228), Expect = 1e-021
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = -1 / +1
Query: 476 GDDQGGGGEALPVAEPPVQGPVHEQQQLRQRVPDRELPRRRVQGGGRHAQVLLQEDMLVV 297
GDDQGGGGEALPVAEP VQG V EQQQLRQRV D ELPRRRVQ AQVLLQE +LV
Sbjct: 25209235 GDDQGGGGEALPVAEPQVQGHVREQQQLRQRVQDGELPRRRVQVARPRAQVLLQEGLLVH 25209414
Query: 296 ASALLAGTS 270
AS ++ +
Sbjct: 25209415 ASPAVSAVA 25209441
>gb|AU078210.1|AU078210 AU078210 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30618_8Z, mRNA sequence
Length = 510
Score = 130 bits (279), Expect(2) = 2e-029
Identities = 48/62 (77%), Positives = 55/62 (88%)
Frame = -2 / +3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GTTKVAEARHCLS SHRFKG+C+SSNNCANVC+T +FP GECK+ G RKC CKK+
Sbjct: 30 ATEMGTTKVAEARHCLSXSHRFKGMCVSSNNCANVCRTXSFPDGECKSHGLERKCXCKKV 209
Query: 307 C* 302
C*
Sbjct: 210 C* 215
Score = 24.0 bits (46), Expect(2) = 2e-029
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +3
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 429 ASCCHVRFXISALMNWHT*KKKKKK 503
>gb|AU029936.1|AU029936 AU029936 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_1A, mRNA sequence
Length = 460
Score = 76.7 bits (161), Expect(2) = 5e-029
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -2 / +2
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
+G SNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 158 QGHVRDSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 277
Score = 75.3 bits (158), Expect(2) = 5e-029
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+++
Sbjct: 36 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVTA 179
>gb|AU030229.1|AU030229 AU030229 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50787_2Z, mRNA sequence
Length = 657
Score = 131 bits (281), Expect = 7e-029
Identities = 52/81 (64%), Positives = 58/81 (71%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENF 365
M S RM A VATE+GTTK E RHCLSQSHRFKG+C SSN CANVC+T +F
Sbjct: 86 MXPSXRMVASAFLLLAILVATEMGTTKXXEXRHCLSQSHRFKGMCXSSNXCANVCRTXSF 265
Query: 364 PGGECKAEGATRKCFCKKIC* 302
P GECK+ G RKCFCKK+C*
Sbjct: 266 PDGECKSHGLERKCFCKKVC* 328
>gb|AU078249.1|AU078249 AU078249 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61775_2Z, mRNA sequence
Length = 469
Score = 129 bits (277), Expect = 2e-028
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTTK EARHCLSQSHRFKG+C SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 3 EMGTTKXPEARHCLSQSHRFKGMCXSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 182
>gb|AU077695.1|AU077695 AU077695 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_2Z, mRNA sequence
Length = 450
Score = 122 bits (261), Expect(2) = 4e-027
Identities = 44/54 (81%), Positives = 50/54 (92%)
Frame = -2 / +1
Query: 463 VAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
VAEARHCLSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 1 VAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 162
Score = 24.0 bits (46), Expect(2) = 4e-027
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 376 ASCCHVRFHISALMNWHT*KKKKKK 450
>gb|C74193.1|C74193 C74193 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30618_2A, mRNA sequence
Length = 331
Score = 73.5 bits (154), Expect(2) = 9e-026
Identities = 31/48 (64%), Positives = 36/48 (75%)
Frame = -2 / +3
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA RRM A VATE+GTTKVAEARHCLSQSHRFKG+C+++
Sbjct: 30 MAPXRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVTA 173
Score = 67.0 bits (140), Expect(2) = 9e-026
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -2 / +2
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
+G SNNCANVC+TE+FP GECK+ G RK FCKK+
Sbjct: 152 QGHVRDSNNCANVCRTESFPDGECKSHGLERKXFCKKV 265
>ref|XM_473224.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 246
Score = 117 bits (251), Expect = 9e-025
Identities = 47/79 (59%), Positives = 56/79 (70%)
Frame = -2 / +1
Query: 538 LSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPG 359
+SRR+A VA+E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP
Sbjct: 10 ISRRIAPLLFLMLLILVASEMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPW 189
Query: 358 GECKAEGATRKCFCKKIC* 302
GEC+ G RKCFCKK C*
Sbjct: 190 GECRFHGIERKCFCKKRC* 246
>gb|AU065605.1|AU065605 AU065605 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50527_1A, mRNA sequence
Length = 422
Score = 74.8 bits (157), Expect(3) = 4e-024
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = -2 / +1
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+ +
Sbjct: 55 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVXA 198
Score = 53.8 bits (111), Expect(3) = 4e-024
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2 / +3
Query: 421 KGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKK 311
+G SNNCANVC+TE+FP GECK+ G R ++
Sbjct: 177 QGHVRXSNNCANVCRTESFPDGECKSHGLERNASARR 287
Score = 24.4 bits (47), Expect(3) = 4e-024
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -2 / +2
Query: 328 KCFCKKIC 305
+CFCKK+C
Sbjct: 269 QCFCKKVC 292
>gb|AU029937.1|AU029937 AU029937 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50284_2Z, mRNA sequence
Length = 464
Score = 111 bits (237), Expect(2) = 8e-024
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = -2 / +2
Query: 454 ARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
ARH LSQSHRFKG+C+SSNNCANVC+TE+FP GECK+ G RKCFCKK+C*
Sbjct: 2 ARHXLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC* 154
Score = 24.0 bits (46), Expect(2) = 8e-024
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +2
Query: 82 SSRCHV*FKMDLIMQPFVLPKKKKK 8
+S CHV F + +M KKKKK
Sbjct: 368 ASCCHVRFHISALMNWXTX*KKKKK 442
>gb|AACV01010142.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010142, whole
genome shotgun sequence
Length = 12300
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / -1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 3237 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 3058
>ref|NT_079864.2| Oryza sativa (japonica cultivar-group)
Length = 1076642
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / +1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 1041979 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 1042158
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / +2
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 3903140 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 3903319
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 23047239 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 23047418
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
complete sequence
Length = 163039
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / +3
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 128376 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 128555
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 111 bits (238), Expect = 6e-023
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = -2 / +1
Query: 481 ELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
E+GTT+VAEARHC+SQSHRF G CM +NC +VC TE FP GEC+ G RKCFCKK C*
Sbjct: 26094049 EMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC* 26094228
>gb|AU031269.1|AU031269 AU031269 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61252_2Z, mRNA sequence
Length = 477
Score = 110 bits (234), Expect = 2e-022
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = -2 / +2
Query: 454 ARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
ARHCLSQSHRFKG C+SSNNCANVC+TE+FP GECK+ G RK FCKK+C*
Sbjct: 2 ARHCLSQSHRFKGXCVSSNNCANVCRTESFPDGECKSHGLERKXFCKKVC* 154
>gb|AU029850.1|AU029850 AU029850 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50028_1A, mRNA sequence
Length = 414
Score = 74.4 bits (156), Expect(3) = 5e-021
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -2 / +1
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCM 407
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+
Sbjct: 73 MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCV 210
Score = 46.0 bits (94), Expect(3) = 5e-021
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -2 / +3
Query: 421 KGLCMSSNNCANVCQTENFPGGEC 350
+G SNNCANVC+TE+FP GEC
Sbjct: 195 QGHVRXSNNCANVCRTESFPDGEC 266
Score = 22.1 bits (42), Expect(3) = 5e-021
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1 / +3
Query: 587 PEAQSKRVPTAKGGDGAVSTHG 522
P S G DG+VS+HG
Sbjct: 30 PHHSSVSAVRVAGTDGSVSSHG 95
>gb|AU065599.2|AU065599 AU065599 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50501_1A, mRNA sequence
Length = 315
Score = 74.8 bits (157), Expect(3) = 1e-020
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = -2 / +2
Query: 544 MALSRRMAAPXXXXXXXXVATELGTTKVAEARHCLSQSHRFKGLCMSS 401
MA SRRM A VATE+GTTKVAEARHCLSQSHRFKG+C+ +
Sbjct: 53 MAPSRRMVASAFLXXAILVATEMGTTKVAEARHCLSQSHRFKGMCVXA 196
Score = 33.6 bits (67), Expect(3) = 1e-020
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2 / +1
Query: 421 KGLCMSSNNCANVCQTENFP 362
+G SNNCANVC+TE+ P
Sbjct: 175 QGHVRXSNNCANVCRTESSP 234
Score = 31.8 bits (63), Expect(3) = 1e-020
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2 / +3
Query: 379 QTENFPGGECKAEGATRKCFCKK 311
Q FP GECK+ G R CK+
Sbjct: 216 QDGEFPDGECKSHGLERSASCKR 284
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,239,412,273
Number of Sequences: 438736
Number of extensions: 68231591
Number of successful extensions: 863131
Number of sequences better than 1.0e-020: 65
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 147029236722
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)