TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|D15471.1|D15471 RICC0687A Rice callus Oryza sativa (japo... 105 3e-021
gb|AU076174.1|AU076174 AU076174 Rice cDNA from immature lea... 105 3e-021
gb|AU076188.1|AU076188 AU076188 Rice cDNA from immature lea... 105 3e-021
gb|AU076189.1|AU076189 AU076189 Rice cDNA from immature lea... 105 3e-021
gb|AU161755.1|AU161755 AU161755 Rice shoot Oryza sativa (ja... 105 3e-021
gb|CF279379.1|CF279379 14ETL--05-K14.b1 Rice etiolated leaf... 105 3e-021
gb|CF317277.1|CF317277 HD--06-O17.b1 OsHDAC1-overexpressing... 105 3e-021
gb|CF317278.1|CF317278 HD--06-O17.g1 OsHDAC1-overexpressing... 105 3e-021
dbj|AK059058.1| Oryza sativa (japonica cultivar-group) cDNA... 105 3e-021
>gb|D15471.1|D15471 RICC0687A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0687A, mRNA sequence
Length = 475
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +1
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 46 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 222
>gb|AU076174.1|AU076174 AU076174 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50281_1A, mRNA sequence
Length = 461
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +3
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 54 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 230
>gb|AU076188.1|AU076188 AU076188 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50504_1A, mRNA sequence
Length = 346
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +1
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 52 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 228
>gb|AU076189.1|AU076189 AU076189 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50504_2Z, mRNA sequence
Length = 681
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +2
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 203 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 379
>gb|AU161755.1|AU161755 AU161755 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5291, mRNA sequence
Length = 480
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +2
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 59 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 235
>gb|CF279379.1|CF279379 14ETL--05-K14.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-K14, mRNA sequence
Length = 641
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +3
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 69 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 245
>gb|CF317277.1|CF317277 HD--06-O17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-O17, mRNA sequence
Length = 511
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +2
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 62 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 238
>gb|CF317278.1|CF317278 HD--06-O17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-O17, mRNA sequence
Length = 550
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / -2
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 450 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 274
>dbj|AK059058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F10, full
insert sequence
Length = 468
Score = 105 bits (225), Expect = 3e-021
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +1 / +1
Query: 58 GRRPEMAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI* 234
GR AA++AVEK+K LWDSQVNDEE WA NYKL+KA GLF SIF+MRNFGDLMAI*
Sbjct: 73 GRGAMAAAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI* 249
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,909,456,822
Number of Sequences: 438736
Number of extensions: 35895631
Number of successful extensions: 681697
Number of sequences better than 1.0e-020: 13
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 107147140806
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)