TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) c... 98 4e-034
emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC O... 98 5e-034
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-032
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 98 1e-032
gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (ja... 95 6e-032
dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA... 95 8e-032
>gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025027, whole
genome shotgun sequence
Length = 109020
Score = 97.7 bits (207), Expect(2) = 4e-034
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = -3 / -2
Query: 112 SIQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
++QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 8879 TLQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 8769
Score = 78.5 bits (165), Expect(2) = 4e-034
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3 / -2
Query: 274 WQNATKVSSAFAGTREKCVGCSKTVYPTERVRFC 173
WQNA KVSSAFAGTREKCVGC+KTVYP ERV FC
Sbjct: 9197 WQNAIKVSSAFAGTREKCVGCNKTVYPIERVLFC 9096
Score = 75.3 bits (158), Expect(2) = 6e-025
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +3 / +1
Query: 174 QNLTLSVG*TVLLHPTHFSLVPAKALETLVAFCQIICNHDEHHLVPVVHKEQ 329
QN TLS+G*TVLLHPTHFSLVPA ALETL+AFCQ + +H + ++ K++
Sbjct: 9097 QNSTLSIG*TVLLHPTHFSLVPANALETLIAFCQKYNHDKQHPMW*LMTKKE 9252
Score = 70.3 bits (147), Expect(2) = 6e-025
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 8770 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 8871
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 133659
Score = 97.7 bits (207), Expect(2) = 5e-034
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = -3 / -3
Query: 112 SIQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
++QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 4561 TLQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 4451
Score = 78.5 bits (165), Expect(2) = 5e-034
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3 / -3
Query: 274 WQNATKVSSAFAGTREKCVGCSKTVYPTERVRFC 173
WQNA KVSSAFAGTREKCVGC+KTVYP ERV FC
Sbjct: 4879 WQNAIKVSSAFAGTREKCVGCNKTVYPIERVLFC 4778
Score = 75.3 bits (158), Expect(2) = 7e-025
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +3 / +3
Query: 174 QNLTLSVG*TVLLHPTHFSLVPAKALETLVAFCQIICNHDEHHLVPVVHKEQ 329
QN TLS+G*TVLLHPTHFSLVPA ALETL+AFCQ + +H + ++ K++
Sbjct: 4779 QNSTLSIG*TVLLHPTHFSLVPANALETLIAFCQKYNHDKQHPMW*LMTKKE 4934
Score = 70.3 bits (147), Expect(2) = 7e-025
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +3
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 4452 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 4553
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118
genomic scaffold, whole genome shotgun sequence
Length = 3660441
Score = 97.7 bits (207), Expect(2) = 1e-032
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = -3 / +1
Query: 112 SIQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
++QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 852898 TLQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 853008
Score = 78.5 bits (165), Expect(2) = 1e-032
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3 / +1
Query: 274 WQNATKVSSAFAGTREKCVGCSKTVYPTERVRFC 173
WQNA KVSSAFAGTREKCVGC+KTVYP ERV FC
Sbjct: 852580 WQNAIKVSSAFAGTREKCVGCNKTVYPIERVLFC 852681
Score = 75.3 bits (158), Expect(2) = 2e-023
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +3 / -2
Query: 174 QNLTLSVG*TVLLHPTHFSLVPAKALETLVAFCQIICNHDEHHLVPVVHKEQ 329
QN TLS+G*TVLLHPTHFSLVPA ALETL+AFCQ + +H + ++ K++
Sbjct: 852680 QNSTLSIG*TVLLHPTHFSLVPANALETLIAFCQKYNHDKQHPMW*LMTKKE 852525
Score = 70.3 bits (147), Expect(2) = 2e-023
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 853007 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 852906
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 97.7 bits (207), Expect(2) = 1e-032
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = -3 / +1
Query: 112 SIQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
++QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 2032189 TLQVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2032299
Score = 78.5 bits (165), Expect(2) = 1e-032
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -3 / +1
Query: 274 WQNATKVSSAFAGTREKCVGCSKTVYPTERVRFC 173
WQNA KVSSAFAGTREKCVGC+KTVYP ERV FC
Sbjct: 2031871 WQNAIKVSSAFAGTREKCVGCNKTVYPIERVLFC 2031972
Score = 75.3 bits (158), Expect(2) = 2e-023
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +3 / -2
Query: 174 QNLTLSVG*TVLLHPTHFSLVPAKALETLVAFCQIICNHDEHHLVPVVHKEQ 329
QN TLS+G*TVLLHPTHFSLVPA ALETL+AFCQ + +H + ++ K++
Sbjct: 2031971 QNSTLSIG*TVLLHPTHFSLVPANALETLIAFCQKYNHDKQHPMW*LMTKKE 2031816
Score = 70.3 bits (147), Expect(2) = 2e-023
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 2032298 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 2032197
>gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 687
Score = 94.5 bits (200), Expect(2) = 6e-032
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 248 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 352
Score = 70.3 bits (147), Expect(2) = 5e-024
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 351 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 250
Score = 66.1 bits (138), Expect(2) = 6e-032
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKCVGC+KTVYP ERV
Sbjct: 164 ENAIKVSSAFAGTREKCVGCNKTVYPIERV 253
Score = 63.8 bits (133), Expect(2) = 5e-024
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHPTHFSLVPA ALETL+AF
Sbjct: 255 VTLSIG*TVLLHPTHFSLVPANALETLIAF 166
>dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F09, full
insert sequence
Length = 488
Score = 94.5 bits (200), Expect(2) = 8e-032
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 82 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 186
Score = 70.3 bits (147), Expect(2) = 2e-023
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
SFPSCAM* EGLMVHPP QHLKQLL Y+VLLTVT
Sbjct: 185 SFPSCAM*FEGLMVHPP*QHLKQLL*YMVLLTVT 84
Score = 65.2 bits (136), Expect(2) = 8e-032
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = -3 / +1
Query: 268 NATKVSSAFAGTREKCVGCSKTVYPTERV 182
NA KVSSAFAGTREKCVGC+KTVYP ERV
Sbjct: 1 NAIKVSSAFAGTREKCVGCNKTVYPIERV 87
Score = 61.1 bits (127), Expect(2) = 2e-023
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVA 266
+TLS+G*TVLLHPTHFSLVPA ALETL+A
Sbjct: 89 VTLSIG*TVLLHPTHFSLVPANALETLIA 3
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,952,346,733
Number of Sequences: 438736
Number of extensions: 40974504
Number of successful extensions: 212831
Number of sequences better than 1.0e-020: 9
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 79944951064
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)