TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-032
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 123 3e-032
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 123 4e-032
gb|AACV01014669.1| Oryza sativa (japonica cultivar-group) c... 123 4e-032
dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA... 123 4e-032
gb|CD670796.1|CD670796 OsMR213 5MT resistant rice mutant cD... 122 3e-030
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 123 2e-026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 123 2e-026
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 123 bits (264), Expect(2) = 3e-032
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 7185758 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 7185913
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -3
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 7186002 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 7185823
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 7185822 PTCTSPPSRSTHAPIFSES 7185766
Score = 38.6 bits (78), Expect(2) = 3e-032
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 7185968 TCGKNPPPGYTCSI* 7186012
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 123 bits (264), Expect(2) = 3e-032
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 3309545 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 3309700
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -3
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 3309789 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 3309610
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 3309609 PTCTSPPSRSTHAPIFSES 3309553
Score = 38.6 bits (78), Expect(2) = 3e-032
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 3309755 TCGKNPPPGYTCSI* 3309799
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 123 bits (264), Expect(2) = 4e-032
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 126264 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 126419
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -3
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 126508 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 126329
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 126328 PTCTSPPSRSTHAPIFSES 126272
Score = 38.6 bits (78), Expect(2) = 4e-032
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 126474 TCGKNPPPGYTCSI* 126518
>gb|AACV01014669.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014669, whole
genome shotgun sequence
Length = 5817
Score = 123 bits (264), Expect(2) = 4e-032
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 5126 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 4971
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / +1
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 4882 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 5061
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 5062 PTCTSPPSRSTHAPIFSES 5118
Score = 38.6 bits (78), Expect(2) = 4e-032
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 4916 TCGKNPPPGYTCSI* 4872
>dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137N14, full
insert sequence
Length = 1338
Score = 123 bits (264), Expect(2) = 4e-032
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 605 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 760
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -1
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 849 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 670
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 669 PTCTSPPSRSTHAPIFSES 613
Score = 38.6 bits (78), Expect(2) = 4e-032
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 815 TCGKNPPPGYTCSI* 859
>gb|CD670796.1|CD670796 OsMR213 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 573
Score = 122 bits (260), Expect(3) = 3e-030
Identities = 45/52 (86%), Positives = 50/52 (96%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGL ELEAAVCLCTTI+
Sbjct: 316 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLAELEAAVCLCTTIR 471
Score = 29.0 bits (57), Expect(3) = 3e-030
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / +3
Query: 234 APAPPHLRQD 263
APAPPHLRQD
Sbjct: 510 APAPPHLRQD 539
Score = 23.1 bits (44), Expect(3) = 3e-030
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1 / +2
Query: 265 PPPGYTCTV 291
P PGYTC++
Sbjct: 539 PSPGYTCSI 565
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 123 bits (264), Expect = 2e-026
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 24884495 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 24884650
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -2
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 24884739 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 24884560
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 24884559 PTCTSPPSRSTHAPIFSES 24884503
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 123 bits (264), Expect = 2e-026
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP DSLK+GACVDLLGGLVH+G+GDPVVNKCCP+LEGLVELEAAVCLCTTI+
Sbjct: 25844060 CPVDSLKIGACVDLLGGLVHVGIGDPVVNKCCPLLEGLVELEAAVCLCTTIR 25844215
Score = 116 bits (248), Expect = 3e-024
Identities = 51/79 (64%), Positives = 52/79 (65%)
Frame = -3 / -1
Query: 284 QV*PGGGVLPQVRRSWSASGXXXXXXXXXXXMVVQRHXXXXXXXXXXXTGQHLFTTGSPR 105
QV*PGGG LPQVRRSWSA G MVVQRH +GQHLFTTGSP
Sbjct: 25844304 QV*PGGGFLPQVRRSWSARGR*MLMLRSLSLMVVQRHTAASSSTSPSSSGQHLFTTGSPI 25844125
Query: 104 PICTSPPSRSTHAPSFSES 48
P CTSPPSRSTHAP FSES
Sbjct: 25844124 PTCTSPPSRSTHAPIFSES 25844068
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,302,616,358
Number of Sequences: 438736
Number of extensions: 61662976
Number of successful extensions: 358713
Number of sequences better than 1.0e-020: 11
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 166088582223
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)