TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (j... 240 1e-061
gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda ph... 240 1e-061
dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA... 240 1e-061
gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (j... 238 4e-061
gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (ja... 237 8e-061
gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing ... 210 1e-057
gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing... 215 4e-057
gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing... 176 4e-055
gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing ... 177 9e-054
gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (ja... 212 3e-053
gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda ph... 202 5e-050
gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) c... 92 2e-048
gb|AC104271.2| Oryza sativa (japonica cultivar-group) chrom... 92 1e-046
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 92 4e-044
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 92 4e-044
gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare imm... 175 6e-042
gb|CA756409.1|CA756409 BR030041000_PLATE_G11_87_087.ab1 OA ... 122 2e-037
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 90 1e-036
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 90 2e-036
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 90 2e-036
ref|NM_189410.1| Oryza sativa (japonica cultivar-group), p... 118 6e-025
dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA... 114 1e-023
>gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52661, mRNA sequence
Length = 671
Score = 240 bits (519), Expect = 1e-061
Identities = 101/106 (95%), Positives = 103/106 (97%)
Frame = +1 / +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 124 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 303
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 304 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 441
Score = 182 bits (393), Expect = 3e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 440 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 261
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 260 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 165
>gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 500
Score = 240 bits (519), Expect = 1e-061
Identities = 101/106 (95%), Positives = 103/106 (97%)
Frame = +1 / +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 121 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 300
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 301 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 438
Score = 182 bits (393), Expect = 3e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 437 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 258
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 257 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 162
>dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full
insert sequence
Length = 694
Score = 240 bits (519), Expect = 1e-061
Identities = 101/106 (95%), Positives = 103/106 (97%)
Frame = +1 / +3
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 120 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 299
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 300 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 437
Score = 182 bits (393), Expect = 3e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 436 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 257
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 256 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 161
>gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53504, mRNA sequence
Length = 660
Score = 238 bits (515), Expect = 4e-061
Identities = 100/106 (94%), Positives = 102/106 (96%)
Frame = +1 / +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M +E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 112 MXEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 291
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 292 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 429
Score = 182 bits (393), Expect = 3e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 428 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 249
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 248 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 153
>gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52661_1A, mRNA sequence
Length = 468
Score = 237 bits (513), Expect = 8e-061
Identities = 102/127 (80%), Positives = 108/127 (85%)
Frame = +1 / +2
Query: 115 TNTTRRPERLATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRN 294
++ +R RL + +E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRN
Sbjct: 56 SSRSRGLSRLQVAXRPPAFAADGEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRN 235
Query: 295 NKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVII 474
NKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVII
Sbjct: 236 NKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVII 415
Query: 475 VLRNPK* 495
VLRNPK*
Sbjct: 416 VLRNPK* 436
Score = 182 bits (393), Expect = 3e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 435 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 256
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 255 RPSNFLLFRQLISTWVLFFTLIIXTDSGPVLN 160
>gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 530
Score = 210 bits (453), Expect(3) = 1e-057
Identities = 86/92 (93%), Positives = 89/92 (96%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+ Q GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRN+KKLLGRVRAFDRHCNMVLENVR
Sbjct: 128 EATQQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNSKKLLGRVRAFDRHCNMVLENVR 307
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRG 459
EMWTE+PKTGKGKKKALPVNKDRFISKMFLRG
Sbjct: 308 EMWTEVPKTGKGKKKALPVNKDRFISKMFLRG 403
Score = 154 bits (330), Expect(2) = 5e-040
Identities = 66/80 (82%), Positives = 68/80 (85%)
Frame = -3 / -3
Query: 458 PLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 279
P RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 402 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 223
Query: 278 RTWVLFLTLIIRTDRGPVLN 219
TWVLF TLII TD GPVLN
Sbjct: 222 STWVLFFTLIISTDSGPVLN 163
Score = 35.0 bits (70), Expect(2) = 5e-040
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESP 456
HFGFLSTMMTESP
Sbjct: 439 HFGFLSTMMTESP 401
Score = 30.4 bits (60), Expect(3) = 1e-057
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +3
Query: 457 GDSVIIVLRNPK* 495
GDSVIIVLRNPK*
Sbjct: 402 GDSVIIVLRNPK* 440
Score = 25.8 bits (50), Expect(3) = 1e-057
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3 / +2
Query: 6 GSPRRRHYSLPHAAAQTAEGRRE 74
GSP R SLP A T +G++E
Sbjct: 86 GSPAARPPSLPMAEEATQQGKKE 154
>gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 529
Score = 215 bits (465), Expect(2) = 4e-057
Identities = 89/94 (94%), Positives = 91/94 (96%)
Frame = +1 / +3
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 120 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 299
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRG 459
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRG
Sbjct: 300 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRG 401
Score = 154 bits (330), Expect(2) = 5e-040
Identities = 66/80 (82%), Positives = 68/80 (85%)
Frame = -3 / -1
Query: 458 PLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 279
P RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 400 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 221
Query: 278 RTWVLFLTLIIRTDRGPVLN 219
TWVLF TLII TD GPVLN
Sbjct: 220 STWVLFFTLIISTDSGPVLN 161
Score = 35.0 bits (70), Expect(2) = 5e-040
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESP 456
HFGFLSTMMTESP
Sbjct: 437 HFGFLSTMMTESP 399
Score = 30.4 bits (60), Expect(2) = 4e-057
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 457 GDSVIIVLRNPK* 495
GDSVIIVLRNPK*
Sbjct: 400 GDSVIIVLRNPK* 438
>gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 550
Score = 176 bits (378), Expect(2) = 4e-055
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +1 / -3
Query: 277 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLR 456
LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 449 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 270
Query: 457 GDSVIIVLRNPK* 495
GDSVIIVLRNPK*
Sbjct: 269 GDSVIIVLRNPK* 231
Score = 145 bits (311), Expect(2) = 1e-038
Identities = 62/72 (86%), Positives = 64/72 (88%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 232 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 411
Query: 314 RPSSFLLLRQLM 279
RPS+FLL RQL+
Sbjct: 412 RPSNFLLFRQLI 447
Score = 63.4 bits (132), Expect(2) = 4e-055
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1 / -2
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNT 270
MA+E GKKEEEEFSTGPLSVLMMSVKNNT
Sbjct: 549 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNT 457
Score = 38.6 bits (78), Expect(2) = 1e-038
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -3 / +2
Query: 272 WVLFLTLIIRTDRGPVLN 219
WVLF TLII TD GPVLN
Sbjct: 455 WVLFFTLIISTDSGPVLN 508
>gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 536
Score = 177 bits (380), Expect(2) = 9e-054
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = +1 / -1
Query: 259 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFI 438
+ QVLINCRN+KKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALP+NKDRFI
Sbjct: 473 RTTPQVLINCRNSKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPLNKDRFI 294
Query: 439 SKMFLRGDSVIIVLRNPK* 495
SKMFLRGDSVIIVLRNPK*
Sbjct: 293 SKMFLRGDSVIIVLRNPK* 237
Score = 150 bits (322), Expect(2) = 1e-038
Identities = 64/79 (81%), Positives = 67/79 (84%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLF GRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 238 HFGFLSTMMTESPRRNILLMNLSLFNGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 417
Query: 314 RPSSFLLLRQLMRTWVLFL 258
RPS+FLL RQL+ TW + L
Sbjct: 418 RPSNFLLFRQLISTWGVVL 474
Score = 57.9 bits (120), Expect(2) = 9e-054
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1 / -3
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNT 270
GKKEEEEFSTGPLSVLMMSVKNNT
Sbjct: 534 GKKEEEEFSTGPLSVLMMSVKNNT 463
Score = 33.6 bits (67), Expect(2) = 1e-038
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -3 / +2
Query: 269 VLFLTLIIRTDRGPVLN 219
VLF TLII TD GPVLN
Sbjct: 464 VLFFTLIISTDSGPVLN 514
>gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53504_1A, mRNA sequence
Length = 458
Score = 212 bits (458), Expect = 3e-053
Identities = 88/94 (93%), Positives = 89/94 (94%)
Frame = +1 / +2
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 107 MGXEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 286
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRG 459
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRG
Sbjct: 287 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRG 388
Score = 154 bits (330), Expect = 1e-035
Identities = 66/80 (82%), Positives = 68/80 (85%)
Frame = -3 / -3
Query: 458 PLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 279
P RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 387 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 208
Query: 278 RTWVLFLTLIIRTDRGPVLN 219
TWVLF TLII TD GPVLN
Sbjct: 207 STWVLFFTLIISTDSGPVLN 148
>gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 488
Score = 202 bits (435), Expect = 5e-050
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +1 / -3
Query: 241 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPV 420
VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPV
Sbjct: 486 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPV 307
Query: 421 NKDRFISKMFLRGDSVIIVLRNPK* 495
NKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 306 NKDRFISKMFLRGDSVIIVLRNPK* 232
Score = 168 bits (361), Expect = 7e-040
Identities = 72/85 (84%), Positives = 74/85 (87%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 233 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 412
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRT 240
RPS+FLL RQL+ TWVLF TLII T
Sbjct: 413 RPSNFLLFRQLISTWVLFFTLIIST 487
>gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011724, whole
genome shotgun sequence
Length = 16500
Score = 91.8 bits (194), Expect(3) = 2e-048
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +1 / -1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 14355 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 14236
Score = 91.8 bits (194), Expect(3) = 2e-048
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1 / -2
Query: 253 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 14564 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 14436
Score = 87.2 bits (184), Expect(3) = 7e-032
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 14237 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 14350
Score = 63.8 bits (133), Expect(3) = 2e-048
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1 / -1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQV 276
Q GKKEEEEFSTGPLSVLMMSVKNNTQV
Sbjct: 16236 QQGKKEEEEFSTGPLSVLMMSVKNNTQV 16153
Score = 63.4 bits (132), Expect(3) = 7e-032
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -3 / +1
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 14440 SVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 14544
Score = 40.9 bits (83), Expect(3) = 7e-032
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / +2
Query: 275 TWVLFLTLIIRTDRGPVLN 219
TWVLF TLII TD GPVLN
Sbjct: 16154 TWVLFFTLIISTDSGPVLN 16210
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
complete sequence
Length = 117724
Score = 91.8 bits (194), Expect(3) = 1e-046
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +1 / -1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 45391 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 45272
Score = 91.8 bits (194), Expect(3) = 1e-046
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1 / -2
Query: 253 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 45600 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 45472
Score = 87.2 bits (184), Expect(3) = 3e-030
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 45273 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 45386
Score = 63.8 bits (133), Expect(3) = 1e-046
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1 / -1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQV 276
Q GKKEEEEFSTGPLSVLMMSVKNNTQV
Sbjct: 47272 QQGKKEEEEFSTGPLSVLMMSVKNNTQV 47189
Score = 63.4 bits (132), Expect(3) = 3e-030
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -3 / +2
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 45476 SVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 45580
Score = 40.9 bits (83), Expect(3) = 3e-030
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 275 TWVLFLTLIIRTDRGPVLN 219
TWVLF TLII TD GPVLN
Sbjct: 47190 TWVLFFTLIISTDSGPVLN 47246
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 91.8 bits (194), Expect(3) = 4e-044
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +1 / -3
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1849760 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 1849641
Score = 91.8 bits (194), Expect(3) = 4e-044
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1 / -1
Query: 253 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 1849969 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 1849841
Score = 87.2 bits (184), Expect(2) = 1e-028
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 1849642 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 1849755
Score = 63.8 bits (133), Expect(3) = 4e-044
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1 / -3
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQV 276
Q GKKEEEEFSTGPLSVLMMSVKNNTQV
Sbjct: 1851641 QQGKKEEEEFSTGPLSVLMMSVKNNTQV 1851558
Score = 63.4 bits (132), Expect(2) = 1e-028
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -3 / +3
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 1849845 SVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 1849949
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 91.8 bits (194), Expect(3) = 4e-044
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +1 / -1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1820693 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 1820574
Score = 91.8 bits (194), Expect(3) = 4e-044
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1 / -2
Query: 253 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 1820902 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 1820774
Score = 87.2 bits (184), Expect(2) = 1e-028
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 1820575 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 1820688
Score = 63.8 bits (133), Expect(3) = 4e-044
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1 / -1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQV 276
Q GKKEEEEFSTGPLSVLMMSVKNNTQV
Sbjct: 1822574 QQGKKEEEEFSTGPLSVLMMSVKNNTQV 1822491
Score = 63.4 bits (132), Expect(2) = 1e-028
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -3 / +3
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 1820778 SVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 1820882
>gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50441_2Z, mRNA
sequence
Length = 453
Score = 175 bits (376), Expect = 6e-042
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = +1 / +2
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VLINCRNNK LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 2 VLINCRNNKXLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 181
Query: 454 RGDSVIIVLRNPK* 495
RGDSVIIVLRNPK*
Sbjct: 182 RGDSVIIVLRNPK* 223
Score = 146 bits (314), Expect = 2e-033
Identities = 63/74 (85%), Positives = 64/74 (86%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQWRS A T
Sbjct: 222 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 43
Query: 314 RPSSFLLLRQLMRT 273
RPS FLL RQL+ T
Sbjct: 42 RPSXFLLFRQLIST 1
>gb|CA756409.1|CA756409 BR030041000_PLATE_G11_87_087.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030041000_PLATE_G11_87_087.ab1 similar to small
nuclear ribonucleoprotein D2-like protein [Chlamys, mRNA
sequence
Length = 627
Score = 122 bits (261), Expect(2) = 2e-037
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
++EEEEF TGPLS+L +VKNNTQVLI CRNN+KLL RV+AFDRHCNMVLE+V E+W E
Sbjct: 101 QREEEEFRTGPLSLLTDAVKNNTQVLIACRNNRKLLARVKAFDRHCNMVLEDVTELWQET 280
Query: 382 PKTGKGKKKA 411
PK+ K K A
Sbjct: 281 PKSSKAKAAA 310
Score = 57.4 bits (119), Expect(2) = 2e-037
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1 / +2
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
A PVNKDR+IS MFLRGDSVI+VL+NPK
Sbjct: 350 AKPVNKDRYISXMFLRGDSVILVLKNPK 433
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 90.4 bits (191), Expect(2) = 1e-036
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +1 / -3
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 2340297 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 2340178
Score = 87.2 bits (184), Expect(2) = 1e-026
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 2340179 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 2340292
Score = 86.8 bits (183), Expect(2) = 1e-036
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +1 / -1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+
Sbjct: 2340491 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 2340384
Score = 56.5 bits (117), Expect(2) = 1e-026
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -3 / +1
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 2340388 SVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 2340492
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 90.4 bits (191), Expect(2) = 2e-036
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +1 / -1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 152216 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 152097
Score = 87.2 bits (184), Expect(2) = 1e-026
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 152098 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 152211
Score = 86.8 bits (183), Expect(2) = 2e-036
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +1 / -2
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+
Sbjct: 152410 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 152303
Score = 56.5 bits (117), Expect(2) = 1e-026
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -3 / +3
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 152307 SVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 152411
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 90.4 bits (191), Expect(2) = 2e-036
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +1 / -2
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 45865 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 45746
Score = 87.2 bits (184), Expect(2) = 1e-026
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -3 / +3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 45747 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 45860
Score = 86.8 bits (183), Expect(2) = 2e-036
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +1 / -3
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+
Sbjct: 46059 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 45952
Score = 56.5 bits (117), Expect(2) = 1e-026
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -3 / +2
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 45956 SVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 46060
>ref|NM_189410.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 153
Score = 118 bits (253), Expect = 6e-025
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +1 / +1
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
MVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 153
Score = 105 bits (224), Expect = 6e-021
Identities = 45/50 (90%), Positives = 45/50 (90%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSST 345
HFGFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS T
Sbjct: 152 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRT 3
>dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B09, full
insert sequence
Length = 360
Score = 114 bits (243), Expect = 1e-023
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = +1 / +2
Query: 352 ENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
ENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 2 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 145
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,931,058,988
Number of Sequences: 438736
Number of extensions: 74545772
Number of successful extensions: 442825
Number of sequences better than 1.0e-020: 31
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 168811345866
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)