TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ137986.1|BQ137986 NF008A09PH1F1066 Phoma-infected Medi... 135 3e-031
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 131 4e-030
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 131 4e-030
gb|AC144657.6| Medicago truncatula clone mth2-16a6, complet... 128 4e-029
gb|AC144540.6| Medicago truncatula clone mth2-19p16, comple... 128 4e-029
>gb|BQ137986.1|BQ137986 NF008A09PH1F1066 Phoma-infected Medicago truncatula cDNA clone
NF008A09PH 5', mRNA sequence
Length = 658
Score = 135 bits (289), Expect = 3e-031
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = -2 / +3
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGR S E+I+STYKIMRRIE EEL+LDA+ELVITSTRQEID
Sbjct: 459 PMVLTGHSLGRNKLEQLLKQGRQSWEDINSTYKIMRRIEAEELSLDAAELVITSTRQEID 638
Query: 16 EQWGL 2
EQWGL
Sbjct: 639 EQWGL 653
Score = 100 bits (212), Expect = 3e-021
Identities = 43/65 (66%), Positives = 46/65 (70%)
Frame = +3 / -1
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
+PHCSSISCLVLVMT I L+ILYVE ISS D RPC R CSSLFLPSE*P
Sbjct: 652 SPHCSSISCLVLVMTSSAASRESSSASILLIILYVELISSQDWRPCLRSCSSLFLPSE*P 473
Query: 183 VSTMG 197
V T+G
Sbjct: 472 VRTIG 458
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 131 bits (281), Expect = 4e-030
Identities = 54/65 (83%), Positives = 62/65 (95%)
Frame = -2 / -3
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGR SKE+I+S YK+MRRIE EEL+LDA+ELVITST+QEI+
Sbjct: 115624 PMVLTGHSLGRNKLEQLLKQGRQSKEDINSMYKMMRRIEAEELSLDAAELVITSTKQEIE 115445
Query: 16 EQWGL 2
EQWGL
Sbjct: 115444 EQWGL 115430
Score = 99.1 bits (210), Expect = 6e-021
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = +3 / +3
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
+PHCSSISC VLV+T I L+ILY+E ISS D RPC R CSSLFLPSE*P
Sbjct: 115431 SPHCSSISCFVLVITSSAASRESSSASILLIILYIELISSFDWRPCLRSCSSLFLPSE*P 115610
Query: 183 VSTMG 197
VST+G
Sbjct: 115611 VSTIG 115625
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 131 bits (281), Expect = 4e-030
Identities = 54/65 (83%), Positives = 62/65 (95%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQ+LKQGR SKE+I+S YK+MRRIE EEL+LDA+ELVITST+QEI+
Sbjct: 58210 PMVLTGHSLGRNKLEQLLKQGRQSKEDINSMYKMMRRIEAEELSLDAAELVITSTKQEIE 58389
Query: 16 EQWGL 2
EQWGL
Sbjct: 58390 EQWGL 58404
Score = 99.1 bits (210), Expect = 6e-021
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = +3 / -3
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
+PHCSSISC VLV+T I L+ILY+E ISS D RPC R CSSLFLPSE*P
Sbjct: 58403 SPHCSSISCFVLVITSSAASRESSSASILLIILYIELISSFDWRPCLRSCSSLFLPSE*P 58224
Query: 183 VSTMG 197
VST+G
Sbjct: 58223 VSTIG 58209
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
Length = 92738
Score = 128 bits (274), Expect = 4e-029
Identities = 51/65 (78%), Positives = 62/65 (95%)
Frame = -2 / +3
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR+S++EI++TYKIMRRIEGEELALD SE+VITST+QE++
Sbjct: 52107 PMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEGEELALDGSEIVITSTKQEVE 52286
Query: 16 EQWGL 2
EQW L
Sbjct: 52287 EQWRL 52301
>gb|AC144540.6| Medicago truncatula clone mth2-19p16, complete sequence
Length = 78738
Score = 128 bits (274), Expect = 4e-029
Identities = 51/65 (78%), Positives = 62/65 (95%)
Frame = -2 / -3
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR+S++EI++TYKIMRRIEGEELALD SE+VITST+QE++
Sbjct: 58735 PMVFTGHSLGRDKLEQLLKQGRLSRDEINTTYKIMRRIEGEELALDGSEIVITSTKQEVE 58556
Query: 16 EQWGL 2
EQW L
Sbjct: 58555 EQWRL 58541
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 181,745,010
Number of Sequences: 392609
Number of extensions: 1650694
Number of successful extensions: 129296
Number of sequences better than 1.0e-020: 6
length of database: 147,244,331
effective HSP length: 48
effective length of database: 128,399,099
effective search space used: 2182784683
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)