TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 133 2e-037
gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago tr... 149 1e-035
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 127 1e-033
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 142 3e-033
gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cD... 141 5e-033
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 141 5e-033
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 141 5e-033
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 140 1e-032
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 125 6e-032
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 125 6e-032
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 136 2e-031
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 136 2e-031
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 85 2e-031
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 135 2e-031
gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cD... 134 6e-031
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 133 bits (285), Expect(2) = 2e-037
Identities = 55/91 (60%), Positives = 65/91 (71%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG+ YLA SG+ E++ +A + QFL QIGVFTAVPMI+GFILE G
Sbjct: 395 YIFLYGRAYLAFSGLDEAVSEKAKLLGNTALDAALNAQFLVQIGVFTAVPMIMGFILELG 574
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYF 290
+L A FITMQ Q+CSVFFTFSLGT+TH F
Sbjct: 575 LLKAVFSFITMQLQLCSVFFTFSLGTKTHLF 667
Score = 42.8 bits (87), Expect(2) = 2e-037
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 285 YFGRAILHGGAKYRATG 335
YFGR +LHGGAKYRATG
Sbjct: 663 YFGRTVLHGGAKYRATG 713
>gb|BF632590.1|BF632590 NF032G03DT1F1021 Drought Medicago truncatula cDNA clone NF032G03DT
5', mRNA sequence
Length = 452
Score = 149 bits (321), Expect = 1e-035
Identities = 62/89 (69%), Positives = 68/89 (76%)
Frame = +3 / +3
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
Y FLYGK YLALSGVGE I+ RA I TQFLFQIG+FTAVPM+LGF+LE G
Sbjct: 186 YAFLYGKTYLALSGVGEIIEERAKITKNTALSAALNTQFLFQIGIFTAVPMVLGFVLEQG 365
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTH 284
L A V FITMQFQ+C+VFFTFSLGTRTH
Sbjct: 366 FLRAVVNFITMQFQLCTVFFTFSLGTRTH 452
Score = 120 bits (257), Expect = 8e-027
Identities = 53/86 (61%), Positives = 62/86 (72%)
Frame = -1 / -2
Query: 283 WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDSRMKPRIMGTAVNTPIWKRN*VFRAAFKA 104
WVLVP EKVK T NCIV+ T A+K P SR KP+ +GTAVN PIWKRN VF+AA +A
Sbjct: 451 WVLVPKEKVKKTVQS*NCIVMKLTTALKKPCSRTKPKTIGTAVNIPIWKRNCVFKAALRA 272
Query: 103 AFCSISALF*IDSPTPDKARYIFP*R 26
F I AL I SPTP+ A+Y+FP*R
Sbjct: 271 VFLVILALSSIISPTPESAKYVFP*R 194
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 127 bits (272), Expect(2) = 1e-033
Identities = 51/74 (68%), Positives = 61/74 (82%)
Frame = +3 / +1
Query: 129 QFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILH 308
QF+ Q+G+FTA+PM++ LE G L A F+TMQ Q+ S+FFTFSLGTRTH+FGR ILH
Sbjct: 292 QFIIQLGIFTALPMVVENTLEHGFLPAVWDFLTMQLQLGSLFFTFSLGTRTHFFGRTILH 471
Query: 309 GGAKYRATGRGFVV 350
GGAKYRATGRGFVV
Sbjct: 472 GGAKYRATGRGFVV 513
Score = 35.4 bits (71), Expect(2) = 1e-033
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESIQNRA 86
Y FL+G++Y+ALSG+ + QN A
Sbjct: 187 YAFLWGRLYMALSGIEKEAQNNA 255
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 142 bits (304), Expect = 3e-033
Identities = 58/93 (62%), Positives = 68/93 (73%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG+ YLA SG+ E++ +A + QFL QIGVFTAVPMI+GFILE G
Sbjct: 371 YIFLYGRAYLAFSGLDEAVSEKAKLLGNTALDAALNAQFLVQIGVFTAVPMIMGFILELG 550
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGR 296
+L A FITMQ Q+CSVFFTFSLGT+THYFGR
Sbjct: 551 LLKAVFSFITMQLQLCSVFFTFSLGTKTHYFGR 649
>gb|BF004482.1|BF004482 EST432980 KV1 Medicago truncatula cDNA clone pKV1-17D12, mRNA
sequence
Length = 617
Score = 141 bits (302), Expect = 5e-033
Identities = 60/111 (54%), Positives = 73/111 (65%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG++YL LSG+ E + + I +Q QIG A+PM++ LE G
Sbjct: 251 YIFLYGRLYLVLSGLEEGLSAQKAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERG 430
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA +FI MQ Q+ VFFTFSLGT+THYFGR +LHGGAKYR TGRGFVV
Sbjct: 431 FRTALSEFILMQLQLAPVFFTFSLGTKTHYFGRTLLHGGAKYRPTGRGFVV 583
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 141 bits (302), Expect = 5e-033
Identities = 60/111 (54%), Positives = 73/111 (65%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG++YL LSG+ E + + I +Q QIG A+PM++ LE G
Sbjct: 8065 YIFLYGRLYLVLSGLEEGLSAQKAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERG 8244
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA +FI MQ Q+ VFFTFSLGT+THYFGR +LHGGAKYR TGRGFVV
Sbjct: 8245 FRTALSEFILMQLQLAPVFFTFSLGTKTHYFGRTLLHGGAKYRPTGRGFVV 8397
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 141 bits (302), Expect = 5e-033
Identities = 60/111 (54%), Positives = 73/111 (65%)
Frame = +3 / +1
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG++YL LSG+ E + + I +Q QIG A+PM++ LE G
Sbjct: 79462 YIFLYGRLYLVLSGLEEGLSAQKAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERG 79641
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA +FI MQ Q+ VFFTFSLGT+THYFGR +LHGGAKYR TGRGFVV
Sbjct: 79642 FRTALSEFILMQLQLAPVFFTFSLGTKTHYFGRTLLHGGAKYRPTGRGFVV 79794
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 140 bits (300), Expect = 1e-032
Identities = 58/111 (52%), Positives = 73/111 (65%)
Frame = +3 / -1
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
Y+FLYG++YL LSG+ E + + I +Q QIG A+PM++ LE G
Sbjct: 61997 YVFLYGRLYLVLSGLEEGLSTQKAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERG 61818
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA +FI MQ Q+ VFFTFSLGT+THY+GR +LHGGAKYR TGRGFVV
Sbjct: 61817 FRTALSEFILMQLQLAPVFFTFSLGTKTHYYGRTLLHGGAKYRPTGRGFVV 61665
Score = 85.4 bits (180), Expect(2) = 2e-031
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = +3 / -2
Query: 201 LTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAK 320
L A V FITMQFQ+C+VFFTFSLGTRTHYFGR ILHGGA+
Sbjct: 2113 LQAVVNFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGAR 1994
Score = 78.5 bits (165), Expect(2) = 2e-031
Identities = 34/59 (57%), Positives = 39/59 (66%)
Frame = +3 / -3
Query: 39 MYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESGVLTAFV 215
+Y ALSGVGE I+ RA I TQFLFQIG+FTAVPM+LGF+LE G L V
Sbjct: 2499 LY*ALSGVGEIIEERAKITKNTALSAALNTQFLFQIGIFTAVPMVLGFVLEQGFLRVSV 2323
Score = 75.3 bits (158), Expect(2) = 3e-021
Identities = 34/58 (58%), Positives = 40/58 (68%)
Frame = -1 / +2
Query: 214 TKAVKTPDSRMKPRIMGTAVNTPIWKRN*VFRAAFKAAFCSISALF*IDSPTPDKARY 41
T +K P SR KP+ +GTAVN PIWKRN VF+AA +A F I AL I SPTP+ A Y
Sbjct: 2324 TLTLKKPCSRTKPKTIGTAVNIPIWKRNCVFKAALRAVFLVILALSSIISPTPESA*Y 2497
Score = 54.2 bits (112), Expect(2) = 3e-021
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 316 APPCNIARPK*WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDS 188
APP I RPK*WVLVP EKVK T NCIV+ T A + S
Sbjct: 1998 APP*RIVRPK*WVLVPKEKVKKTVQS*NCIVMKLTTACRQKKS 2126
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 125 bits (267), Expect(2) = 6e-032
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +3 / +3
Query: 129 QFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILH 308
QF+ Q+G+FTA+PMI+ LE G L A F+TMQ Q+ SVF+TFS+GTR+H+FGR ILH
Sbjct: 21144 QFIIQLGLFTALPMIVENSLEHGFLQAIWDFLTMQLQLSSVFYTFSMGTRSHFFGRTILH 21323
Query: 309 GGAKYRATGRGFVV 350
GGAKYRATGRGFVV
Sbjct: 21324 GGAKYRATGRGFVV 21365
Score = 32.2 bits (64), Expect(2) = 6e-032
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3 / +3
Query: 18 YIFLYGKMYLALSGVGESIQNRAD 89
Y FL+ ++YLALSGV +S+++ ++
Sbjct: 21039 YAFLWSRLYLALSGVEKSMESNSN 21110
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 125 bits (267), Expect(2) = 6e-032
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +3 / -1
Query: 129 QFLFQIGVFTAVPMILGFILESGVLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILH 308
QF+ Q+G+FTA+PMI+ LE G L A F+TMQ Q+ SVF+TFS+GTR+H+FGR ILH
Sbjct: 11653 QFIIQLGLFTALPMIVENSLEHGFLQAIWDFLTMQLQLSSVFYTFSMGTRSHFFGRTILH 11474
Query: 309 GGAKYRATGRGFVV 350
GGAKYRATGRGFVV
Sbjct: 11473 GGAKYRATGRGFVV 11432
Score = 32.2 bits (64), Expect(2) = 6e-032
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3 / -1
Query: 18 YIFLYGKMYLALSGVGESIQNRAD 89
Y FL+ ++YLALSGV +S+++ ++
Sbjct: 11758 YAFLWSRLYLALSGVEKSMESNSN 11687
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 136 bits (291), Expect = 2e-031
Identities = 54/111 (48%), Positives = 73/111 (65%)
Frame = +3 / -1
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
Y+FLYG++Y+ LSGV I + ++I +Q + Q+G+ +PM++ LE G
Sbjct: 97479 YVFLYGRLYMVLSGVEREIISSSNIHQSKALEQALASQSVVQLGLLLVLPMVMEIGLEKG 97300
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA FI MQ Q+ SVFFTF LGT+ HY+GR +LHGG+KYR TGRGFVV
Sbjct: 97299 FRTALGDFIIMQLQLASVFFTFQLGTKAHYYGRTLLHGGSKYRPTGRGFVV 97147
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 136 bits (291), Expect = 2e-031
Identities = 54/111 (48%), Positives = 73/111 (65%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
Y+FLYG++Y+ LSGV I + ++I +Q + Q+G+ +PM++ LE G
Sbjct: 76355 YVFLYGRLYMVLSGVEREIISSSNIHQSKALEQALASQSVVQLGLLLVLPMVMEIGLEKG 76534
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA FI MQ Q+ SVFFTF LGT+ HY+GR +LHGG+KYR TGRGFVV
Sbjct: 76535 FRTALGDFIIMQLQLASVFFTFQLGTKAHYYGRTLLHGGSKYRPTGRGFVV 76687
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 85.4 bits (180), Expect(2) = 2e-031
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 201 LTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAK 320
L A V FITMQFQ+C+VFFTFSLGTRTHYFGR ILHGGA+
Sbjct: 8167 LQAVVNFITMQFQLCTVFFTFSLGTRTHYFGRTILHGGAR 8286
Score = 78.5 bits (165), Expect(2) = 2e-031
Identities = 34/59 (57%), Positives = 39/59 (66%)
Frame = +3 / +2
Query: 39 MYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESGVLTAFV 215
+Y ALSGVGE I+ RA I TQFLFQIG+FTAVPM+LGF+LE G L V
Sbjct: 7781 LY*ALSGVGEIIEERAKITKNTALSAALNTQFLFQIGIFTAVPMVLGFVLEQGFLRVSV 7957
Score = 75.3 bits (158), Expect(2) = 3e-021
Identities = 34/58 (58%), Positives = 40/58 (68%)
Frame = -1 / -2
Query: 214 TKAVKTPDSRMKPRIMGTAVNTPIWKRN*VFRAAFKAAFCSISALF*IDSPTPDKARY 41
T +K P SR KP+ +GTAVN PIWKRN VF+AA +A F I AL I SPTP+ A Y
Sbjct: 7956 TLTLKKPCSRTKPKTIGTAVNIPIWKRNCVFKAALRAVFLVILALSSIISPTPESA*Y 7783
Score = 54.2 bits (112), Expect(2) = 3e-021
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -1 / -3
Query: 316 APPCNIARPK*WVLVPSEKVKNTEHIWNCIVIN*TKAVKTPDS 188
APP I RPK*WVLVP EKVK T NCIV+ T A + S
Sbjct: 8282 APP*RIVRPK*WVLVPKEKVKKTVQS*NCIVMKLTTACRQKKS 8154
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 135 bits (290), Expect = 2e-031
Identities = 61/111 (54%), Positives = 71/111 (63%)
Frame = +3 / -2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
Y FLYGK+YL+LSGV +I A +Q L QIG+ +PMI+ LE G
Sbjct: 56153 YAFLYGKLYLSLSGVEAAIVKFARRKGDDPLKAAMASQSLVQIGLLMTLPMIMEIGLERG 55974
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHYFGRAILHGGAKYRATGRGFVV 350
TA I MQ Q+ VFFTFSLGT+ HYFGR +LHGGAKYRATGRGFVV
Sbjct: 55973 FRTALGDLIIMQLQLAPVFFTFSLGTKLHYFGRTLLHGGAKYRATGRGFVV 55821
>gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cDNA clone pKV1-14L2, mRNA
sequence
Length = 364
Score = 134 bits (287), Expect = 6e-031
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = +3 / +2
Query: 18 YIFLYGKMYLALSGVGESIQNRADIXXXXXXXXXXXTQFLFQIGVFTAVPMILGFILESG 197
YIFLYG+ YLA SG+ E++ +A + QFL QIGVFTAVPMI+GFILE G
Sbjct: 95 YIFLYGRAYLAFSGLDEAVSEKAKLLGNTALDAALNAQFLVQIGVFTAVPMIMGFILELG 274
Query: 198 VLTAFVQFITMQFQMCSVFFTFSLGTRTHY 287
+L A FITMQ Q+CSVFFTFSLGT+THY
Sbjct: 275 LLKAVFSFITMQLQLCSVFFTFSLGTKTHY 364
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 431,987,473
Number of Sequences: 392609
Number of extensions: 6557755
Number of successful extensions: 154700
Number of sequences better than 1.0e-020: 18
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 8878006410
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)