TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8161196.3.1
(825 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1... 215 7e-055
emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-1... 151 2e-051
gb|DW016370.1|DW016370 EST1225331 MTY Medicago truncatula c... 151 2e-051
gb|BM779869.1|BM779869 EST590445 KV2 Medicago truncatula cD... 151 2e-051
gb|BQ141534.1|BQ141534 NF008A01PH1F1001 Phoma-infected Medi... 151 2e-051
gb|BG644908.1|BG644908 EST506527 KV3 Medicago truncatula cD... 151 2e-051
gb|DW015706.1|DW015706 EST1224667 MTY Medicago truncatula c... 135 1e-046
gb|AW684495.1|AW684495 NF017F03NR1F1000 Nodulated root Medi... 142 6e-033
gb|AL372685.1|AL372685 MtBA52G06F1 MtBA Medicago truncatula... 134 1e-030
gb|BG647091.1|BG647091 EST508710 HOGA Medicago truncatula c... 114 5e-027
gb|CX528843.1|CX528843 s13dNF08H09MJ076_243754 Methyl Jasmo... 114 5e-027
gb|BQ139804.1|BQ139804 NF024E03PH1F1022 Phoma-infected Medi... 114 5e-027
emb|CR346780.1| mte1-80I16RM1 BAC end, cultivar Jemalong A1... 95 2e-023
emb|CR344409.1| mte1-77N22RM1 BAC end, cultivar Jemalong A1... 95 2e-023
gb|AC133780.30| Medicago truncatula clone mth2-27f3, WORKIN... 100 4e-021
gb|CG933017.1|CG933017 MBEAU30TR mth2 Medicago truncatula g... 100 4e-021
gb|AW696837.2|AW696837 NF109E06ST1F1050 Developing stem Med... 100 4e-021
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE
Length = 111128
Score = 215 bits (464), Expect = 7e-055
Identities = 82/134 (61%), Positives = 100/134 (74%)
Frame = +3 / +3
Query: 339 GISLILSRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRC 518
G S M LC FCG QRS++YCRSDAASLCLSCDR+VHSAN LS+RH RTL+C+RC
Sbjct: 55848 GASTACGLKMGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERC 56027
Query: 519 GLQPASVRCLEDNTSLCQNCDWNGHDAASGASGHKRQAINCYSGCPSSAELSRIWSFITD 698
LQPA VRC+E+ SLCQNCDW+ H +S HKRQ+INC+SGCPS++ELS IW F +D
Sbjct: 56028 NLQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSD 56207
Query: 699 IPTVAAEPNYEDGL 740
IP+ ++ GL
Sbjct: 56208 IPSTGEACEHKLGL 56249
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3,
complete sequence
Length = 141577
Score = 151 bits (324), Expect(2) = 2e-051
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +3 / +2
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 72434 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEE 72613
Query: 555 NTSLCQNCDWNGHDAASGAS 614
SLCQNCDW GH ++ ++
Sbjct: 72614 KVSLCQNCDWLGHGNSTSSN 72673
Score = 73.0 bits (153), Expect(2) = 2e-051
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +2
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 72659 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 72769
>gb|DW016370.1|DW016370 EST1225331 MTY Medicago truncatula cDNA clone MTYAG35, mRNA
sequence
Length = 753
Score = 151 bits (324), Expect(2) = 2e-051
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +3 / +1
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 226 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEE 405
Query: 555 NTSLCQNCDWNGHDAASGAS 614
SLCQNCDW GH ++ ++
Sbjct: 406 KVSLCQNCDWLGHGNSTSSN 465
Score = 73.0 bits (153), Expect(2) = 2e-051
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +1
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 451 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 561
>gb|BM779869.1|BM779869 EST590445 KV2 Medicago truncatula cDNA clone pKV2-53E2, mRNA
sequence
Length = 739
Score = 151 bits (324), Expect(2) = 2e-051
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +3 / +2
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 50 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEE 229
Query: 555 NTSLCQNCDWNGHDAASGAS 614
SLCQNCDW GH ++ ++
Sbjct: 230 KVSLCQNCDWLGHGNSTSSN 289
Score = 73.0 bits (153), Expect(2) = 2e-051
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +2
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 275 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 385
>gb|BQ141534.1|BQ141534 NF008A01PH1F1001 Phoma-infected Medicago truncatula cDNA clone
NF008A01PH 5', mRNA sequence
Length = 669
Score = 151 bits (324), Expect(2) = 2e-051
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +3 / +2
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 278 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEE 457
Query: 555 NTSLCQNCDWNGHDAASGAS 614
SLCQNCDW GH ++ ++
Sbjct: 458 KVSLCQNCDWLGHGNSTSSN 517
Score = 73.0 bits (153), Expect(2) = 2e-051
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +2
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 503 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 613
>gb|BG644908.1|BG644908 EST506527 KV3 Medicago truncatula cDNA clone pKV3-38P3 5' end, mRNA
sequence
Length = 647
Score = 151 bits (324), Expect(2) = 2e-051
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +3 / +1
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 190 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEE 369
Query: 555 NTSLCQNCDWNGHDAASGAS 614
SLCQNCDW GH ++ ++
Sbjct: 370 KVSLCQNCDWLGHGNSTSSN 429
Score = 73.0 bits (153), Expect(2) = 2e-051
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +1
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 415 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 525
>gb|DW015706.1|DW015706 EST1224667 MTY Medicago truncatula cDNA clone MTYA866, mRNA
sequence
Length = 821
Score = 135 bits (289), Expect(2) = 1e-046
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +3 / +3
Query: 399 RSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDNTSLCQNC 578
RSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+ SLCQNC
Sbjct: 3 RSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKVSLCQNC 182
Query: 579 DWNGHDAASGAS 614
DW GH ++ ++
Sbjct: 183 DWLGHGNSTSSN 218
Score = 73.0 bits (153), Expect(2) = 1e-046
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3 / +3
Query: 603 SGASGHKRQAINCYSGCPSSAELSRIWSFITDIPTVA 713
S +S HKRQ INCYSGCPSSAELS IWSF+ DIP+++
Sbjct: 204 STSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLS 314
>gb|AW684495.1|AW684495 NF017F03NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF017F03NR 5', mRNA sequence
Length = 495
Score = 142 bits (305), Expect = 6e-033
Identities = 53/73 (72%), Positives = 59/73 (80%)
Frame = +3 / +2
Query: 375 LCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLED 554
+C FCG QRSM+YCRSDAA LCLSCDR+VHSAN L+RRH RTLLC+RC QPA VRC E+
Sbjct: 275 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCXSQPALVRCSEE 454
Query: 555 NTSLCQNCDWNGH 593
SLC N DW GH
Sbjct: 455 KVSLCXNXDWLGH 493
>gb|AL372685.1|AL372685 MtBA52G06F1 MtBA Medicago truncatula cDNA clone MtBA52G06 T3, mRNA
sequence
Length = 434
Score = 134 bits (288), Expect = 1e-030
Identities = 51/69 (73%), Positives = 58/69 (84%)
Frame = +3 / -2
Query: 366 MVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRC 545
M LC FCG QRS++YCRSDAASLCLSCDR+VHSAN LS+RH RTL+C+RC LQPA VRC
Sbjct: 208 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNLQPAYVRC 29
Query: 546 LEDNTSLCQ 572
E+ SLCQ
Sbjct: 28 AEEKVSLCQ 2
>gb|BG647091.1|BG647091 EST508710 HOGA Medicago truncatula cDNA clone pHOGA-15N3 5' end,
mRNA sequence
Length = 704
Score = 114 bits (243), Expect(2) = 5e-027
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = +3 / +2
Query: 357 SRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPAS 536
S +V C +CG ++IYCR+D+A LC SCDR VHS N L +H R+L+CD C PA+
Sbjct: 17 SHKLVRPCDYCGHSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPAT 196
Query: 537 VRCLEDNTSLCQNCDWNGHDAASGASGHKR 626
+ C +++ CQNCDW H+ + + +R
Sbjct: 197 ILCSTESSVFCQNCDWENHNLSLSSPHERR 286
Score = 28.6 bits (56), Expect(2) = 5e-027
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 609 ASGHKRQAINCYSGCPSSAELSRI 680
+S H+R+++ ++GCPS EL I
Sbjct: 266 SSPHERRSLEGFTGCPSVTELLSI 337
>gb|CX528843.1|CX528843 s13dNF08H09MJ076_243754 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 637
Score = 114 bits (243), Expect(2) = 5e-027
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = +3 / +2
Query: 357 SRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPAS 536
S +V C +CG ++IYCR+D+A LC SCDR VHS N L +H R+L+CD C PA+
Sbjct: 32 SHKLVRPCDYCGHSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPAT 211
Query: 537 VRCLEDNTSLCQNCDWNGHDAASGASGHKR 626
+ C +++ CQNCDW H+ + + +R
Sbjct: 212 ILCSTESSVFCQNCDWENHNLSLSSPHERR 301
Score = 28.6 bits (56), Expect(2) = 5e-027
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 609 ASGHKRQAINCYSGCPSSAELSRI 680
+S H+R+++ ++GCPS EL I
Sbjct: 281 SSPHERRSLEGFTGCPSVTELLSI 352
>gb|BQ139804.1|BQ139804 NF024E03PH1F1022 Phoma-infected Medicago truncatula cDNA clone
NF024E03PH 5', mRNA sequence
Length = 389
Score = 114 bits (243), Expect(2) = 5e-027
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = +3 / +2
Query: 357 SRIMVPLCGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPAS 536
S +V C +CG ++IYCR+D+A LC SCDR VHS N L +H R+L+CD C PA+
Sbjct: 44 SHKLVRPCDYCGHSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPAT 223
Query: 537 VRCLEDNTSLCQNCDWNGHDAASGASGHKR 626
+ C +++ CQNCDW H+ + + +R
Sbjct: 224 ILCSTESSVFCQNCDWENHNLSLSSPHERR 313
Score = 28.6 bits (56), Expect(2) = 5e-027
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 609 ASGHKRQAINCYSGCPSSAELSRI 680
+S H+R+++ ++GCPS EL I
Sbjct: 293 SSPHERRSLEGFTGCPSVTELLSI 364
>emb|CR346780.1| mte1-80I16RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 584
Score = 95.5 bits (202), Expect(2) = 2e-023
Identities = 37/74 (50%), Positives = 48/74 (64%)
Frame = +3 / +3
Query: 384 FCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDNTS 563
FC R ++YC +DAA LCLSCD VH AN LS RH RTL+C+ C A V+CL+
Sbjct: 3 FCTALRPLVYCNADAAYLCLSCDAKVHWANELSGRHLRTLVCNSCCCDLAYVQCLDHKML 182
Query: 564 LCQNCDWNGHDAAS 605
+C++CD HD +S
Sbjct: 183 ICRDCDQKLHDRSS 224
Score = 35.0 bits (70), Expect(2) = 2e-023
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 609 ASGHKRQAINCYSGCPSSAELSRIWSF 689
+S H+++++ + GCPS+ E + +W F
Sbjct: 219 SSPHRKRSVKSFIGCPSAKEFATLWGF 299
>emb|CR344409.1| mte1-77N22RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 565
Score = 95.5 bits (202), Expect(2) = 2e-023
Identities = 37/74 (50%), Positives = 48/74 (64%)
Frame = +3 / +3
Query: 384 FCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDNTS 563
FC R ++YC +DAA LCLSCD VH AN LS RH RTL+C+ C A V+CL+
Sbjct: 3 FCTALRPLVYCNADAAYLCLSCDAKVHWANELSGRHLRTLVCNSCCCDLAYVQCLDHKML 182
Query: 564 LCQNCDWNGHDAAS 605
+C++CD HD +S
Sbjct: 183 ICRDCDQKLHDRSS 224
Score = 35.0 bits (70), Expect(2) = 2e-023
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 609 ASGHKRQAINCYSGCPSSAELSRIWSF 689
+S H+++++ + GCPS+ E + +W F
Sbjct: 219 SSPHRKRSVKSFIGCPSAKEFATLWGF 299
>gb|AC133780.30| Medicago truncatula clone mth2-27f3, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 127776
Score = 100 bits (212), Expect(2) = 4e-021
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +3 / +2
Query: 378 CGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDN 557
C +C + +++YC+ D+A LCL CD+ VHSANAL+ +H R +C C ASVRC +N
Sbjct: 74018 CDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTEN 74197
Query: 558 TSLCQNCDWNGH 593
C CDWN H
Sbjct: 74198 LVQCHRCDWNSH 74233
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3 / +2
Query: 618 HKRQAINCYSGCPSSAEL 671
H R+ I +GCPS E+
Sbjct: 74276 HNRRRIEGLTGCPSVHEI 74329
>gb|CG933017.1|CG933017 MBEAU30TR mth2 Medicago truncatula genomic clone 16E11, DNA
sequence
Length = 769
Score = 100 bits (212), Expect(2) = 4e-021
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +3 / -1
Query: 378 CGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDN 557
C +C + +++YC+ D+A LCL CD+ VHSANAL+ +H R +C C ASVRC +N
Sbjct: 766 CDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTEN 587
Query: 558 TSLCQNCDWNGH 593
C CDWN H
Sbjct: 586 LVQCHRCDWNSH 551
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3 / -1
Query: 618 HKRQAINCYSGCPSSAEL 671
H R+ I +GCPS E+
Sbjct: 508 HNRRRIEGLTGCPSVHEI 455
>gb|AW696837.2|AW696837 NF109E06ST1F1050 Developing stem Medicago truncatula cDNA clone
NF109E06ST 5', mRNA sequence
Length = 584
Score = 100 bits (212), Expect(2) = 4e-021
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +3 / +1
Query: 378 CGFCGKQRSMIYCRSDAASLCLSCDRSVHSANALSRRHRRTLLCDRCGLQPASVRCLEDN 557
C +C + +++YC+ D+A LCL CD+ VHSANAL+ +H R +C C ASVRC +N
Sbjct: 55 CDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTEN 234
Query: 558 TSLCQNCDWNGH 593
C CDWN H
Sbjct: 235 LVQCHRCDWNSH 270
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3 / +1
Query: 618 HKRQAINCYSGCPSSAEL 671
H R+ I +GCPS E+
Sbjct: 313 HNRRRIEGLTGCPSVHEI 366
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 820,595,612
Number of Sequences: 392609
Number of extensions: 11164941
Number of successful extensions: 64666
Number of sequences better than 1.0e-020: 20
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 27729557900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)