TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ153302.1|BQ153302 NF033G07IR1F1054 Irradiated Medicago... 100 9e-046
gb|AJ500917.1|AJ500917 AJ500917 MTGIM Medicago truncatula c... 108 2e-043
gb|AJ499293.1|AJ499293 AJ499293 MTGIM Medicago truncatula c... 108 2e-043
gb|AJ499774.1|AJ499774 AJ499774 MTGIM Medicago truncatula c... 108 2e-043
gb|CA921563.1|CA921563 EST639281 MTUS Medicago truncatula c... 125 8e-033
gb|CA921600.1|CA921600 EST639318 MTUS Medicago truncatula c... 116 4e-032
gb|BQ123306.1|BQ123306 EST608882 GLSD Medicago truncatula c... 129 7e-032
gb|BF518937.1|BF518937 EST456330 DSIL Medicago truncatula c... 100 9e-031
gb|BQ148753.1|BQ148753 NF082B09FL1F1076 Developing flower M... 123 4e-030
gb|AC152499.17| Medicago truncatula clone mth2-56f20, compl... 98 4e-029
gb|CA989727.1|CA989727 EST643235 GLSD Medicago truncatula c... 129 4e-029
gb|CA989762.1|CA989762 EST643270 GLSD Medicago truncatula c... 129 6e-029
gb|CX526998.1|CX526998 s13dNF37H05AT048_514508 Aphid-Infect... 129 6e-029
gb|CX538685.1|CX538685 s13dNF0ID01GS010_460622 Germinating ... 126 6e-028
gb|CA990354.1|CA990354 EST643862 GESD Medicago truncatula c... 82 4e-025
gb|AW773684.1|AW773684 EST332670 KV3 Medicago truncatula cD... 115 1e-024
gb|AL383694.1|AL383694 MtBC16A07R1 MtBC Medicago truncatula... 114 2e-024
gb|BE942518.1|BE942518 EST422097 MGHG Medicago truncatula c... 113 4e-024
gb|BE942787.1|BE942787 EST422366 MGHG Medicago truncatula c... 113 4e-024
gb|CG952158.1|CG952158 MBEGR78TR mth2 Medicago truncatula g... 93 6e-023
gb|BE942254.1|BE942254 EST421833 MGHG Medicago truncatula c... 75 6e-022
gb|CA920978.1|CA920978 EST638696 MTUS Medicago truncatula c... 73 1e-020
>gb|BQ153302.1|BQ153302 NF033G07IR1F1054 Irradiated Medicago truncatula cDNA clone
NF033G07IR 5', mRNA sequence
Length = 696
Score = 99.6 bits (211), Expect(4) = 9e-046
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2 / +1
Query: 387 ELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
+L+ D +R Y + Y+ L +A+R GA+VRGY VW+L DNFEW GY K+GLY+VD T
Sbjct: 373 DLLHDFKRIEYHKAYLAALLRAMRKGADVRGYMVWSLFDNFEWNSGYDKKFGLYYVDRQT 552
Query: 207 QERTXRMSARWYQGFL 160
ER ++S W+ FL
Sbjct: 553 LERIPKLSVEWFSSFL 600
Score = 55.6 bits (115), Expect(4) = 9e-046
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
DG+ IG T + FF VP+ +E + Y+ +Y P+YITENGY
Sbjct: 208 DGIPIGDQTGMKWFFVVPKGMEKIVDYIKIKYHNMPMYITENGY 339
Score = 44.1 bits (90), Expect(4) = 9e-046
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -2 / +1
Query: 681 LLRYKADFIGLNHYTAIYARDCLRSPCNL 595
LLR DFIG+N+Y A+YA+DC S C L
Sbjct: 73 LLRGSLDFIGINNYGALYAKDCYLSTCPL 159
Score = 42.3 bits (86), Expect(4) = 9e-046
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -2 / +1
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
G+YP MR ILGS LP F+++EK+LL
Sbjct: 1 GEYPADMRSILGSQLPRFSSKEKSLL 78
>gb|AJ500917.1|AJ500917 AJ500917 MTGIM Medicago truncatula cDNA clone mtgmacc120021f06,
mRNA sequence
Length = 644
Score = 108 bits (231), Expect(4) = 2e-043
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = -2 / -2
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G + S + E ++DV+R YL Y+ L+ A+R GA+V+GYFVW++LDNFEW GY +
Sbjct: 250 GTSESSYPTTEYELNDVKRVEYLSSYLDSLATAIRKGADVKGYFVWSILDNFEWNHGYSI 71
Query: 240 KYGLYHVDFDTQERTXRMSARWY 172
++GL+HVDF T RT R SA WY
Sbjct: 70 RFGLHHVDFATLNRTPRGSAFWY 2
Score = 47.8 bits (98), Expect(4) = 2e-043
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -2 / -2
Query: 534 IGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
IG TALA F+ P+ +E + Y+ RY P++ITENG+
Sbjct: 370 IGEPTALAWFYVHPQGMENIVTYIKDRYNNIPMFITENGF 251
Score = 43.7 bits (89), Expect(4) = 2e-043
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 663 DFIGLNHYTAIYARDCLRSPCNLG 592
DFIG+NHYT+ Y +DC+ S C G
Sbjct: 502 DFIGINHYTSYYVKDCIFSACEQG 431
Score = 33.6 bits (67), Expect(4) = 2e-043
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2 / -2
Query: 762 ILGDYPGAMREILGSDLPTFTAEEK 688
ILG YP M EILG DL F+ +K
Sbjct: 598 ILGKYPAEMHEILGPDLLVFSKYDK 524
>gb|AJ499293.1|AJ499293 AJ499293 MTGIM Medicago truncatula cDNA clone mtgmacc120002d02,
mRNA sequence
Length = 616
Score = 108 bits (231), Expect(4) = 2e-043
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = -2 / -1
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G + S + E ++DV+R YL Y+ L+ A+R GA+V+GYFVW++LDNFEW GY +
Sbjct: 250 GTSESSYPTTEYELNDVKRVEYLSSYLDSLATAIRKGADVKGYFVWSILDNFEWNHGYSI 71
Query: 240 KYGLYHVDFDTQERTXRMSARWY 172
++GL+HVDF T RT R SA WY
Sbjct: 70 RFGLHHVDFATLNRTPRGSAFWY 2
Score = 47.8 bits (98), Expect(4) = 2e-043
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -2 / -1
Query: 534 IGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
IG TALA F+ P+ +E + Y+ RY P++ITENG+
Sbjct: 370 IGEPTALAWFYVHPQGMENIVTYIKDRYNNIPMFITENGF 251
Score = 43.7 bits (89), Expect(4) = 2e-043
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2 / -1
Query: 663 DFIGLNHYTAIYARDCLRSPCNLG 592
DFIG+NHYT+ Y +DC+ S C G
Sbjct: 502 DFIGINHYTSYYVKDCIFSACEQG 431
Score = 33.6 bits (67), Expect(4) = 2e-043
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2 / -1
Query: 762 ILGDYPGAMREILGSDLPTFTAEEK 688
ILG YP M EILG DL F+ +K
Sbjct: 598 ILGKYPAEMHEILGPDLLVFSKYDK 524
>gb|AJ499774.1|AJ499774 AJ499774 MTGIM Medicago truncatula cDNA clone mtgmacc120008d03,
mRNA sequence
Length = 606
Score = 108 bits (231), Expect(4) = 2e-043
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = -2 / -3
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G + S + E ++DV+R YL Y+ L+ A+R GA+V+GYFVW++LDNFEW GY +
Sbjct: 250 GTSESSYPTTEYELNDVKRVEYLSSYLDSLATAIRKGADVKGYFVWSILDNFEWNHGYSI 71
Query: 240 KYGLYHVDFDTQERTXRMSARWY 172
++GL+HVDF T RT R SA WY
Sbjct: 70 RFGLHHVDFATLNRTPRGSAFWY 2
Score = 47.8 bits (98), Expect(4) = 2e-043
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -2 / -3
Query: 534 IGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
IG TALA F+ P+ +E + Y+ RY P++ITENG+
Sbjct: 370 IGEPTALAWFYVHPQGMENIVTYIKDRYNNIPMFITENGF 251
Score = 43.7 bits (89), Expect(4) = 2e-043
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2 / -3
Query: 663 DFIGLNHYTAIYARDCLRSPCNLG 592
DFIG+NHYT+ Y +DC+ S C G
Sbjct: 502 DFIGINHYTSYYVKDCIFSACEQG 431
Score = 33.6 bits (67), Expect(4) = 2e-043
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2 / -3
Query: 762 ILGDYPGAMREILGSDLPTFTAEEK 688
ILG YP M EILG DL F+ +K
Sbjct: 598 ILGKYPAEMHEILGPDLLVFSKYDK 524
>gb|CA921563.1|CA921563 EST639281 MTUS Medicago truncatula cDNA clone MTUS-41H2, mRNA
sequence
Length = 713
Score = 125 bits (267), Expect(2) = 8e-033
Identities = 41/79 (51%), Positives = 65/79 (82%)
Frame = -2 / -3
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVD 217
++EE ++D++R NY+ G++ L +++R GA+VRGYF W+LLDNFEW +G+ +++GLYHVD
Sbjct: 468 TKEEYLNDIKRINYMSGHLNNLGESIREGADVRGYFAWSLLDNFEWLYGFTVRFGLYHVD 289
Query: 216 FDTQERTXRMSARWYQGFL 160
F TQ+RT ++SA WY+ F+
Sbjct: 288 FATQKRTPKLSASWYKHFI 232
Score = 36.8 bits (74), Expect(2) = 8e-033
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / -1
Query: 495 PEAIELAIQYVNGRYKGTPVYITENG 418
P+ ++ + YV RY TP++ITENG
Sbjct: 662 PQGMKKTLTYVKDRYNNTPMFITENG 585
>gb|CA921600.1|CA921600 EST639318 MTUS Medicago truncatula cDNA clone MTUS-42C6, mRNA
sequence
Length = 730
Score = 116 bits (248), Expect(2) = 4e-032
Identities = 41/79 (51%), Positives = 61/79 (77%)
Frame = -2 / -3
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVD 217
+ E+ ++D RKNY+ G++ L +A+R GA+VRGYF W+LLDNFEW GY +++GL+HVD
Sbjct: 617 TEEQYLNDFDRKNYMAGHLLSLLEAIRKGADVRGYFAWSLLDNFEWLQGYTVRFGLHHVD 438
Query: 216 FDTQERTXRMSARWYQGFL 160
+ T +RT R+SA WY+ F+
Sbjct: 437 YATLKRTPRLSANWYKEFI 381
Score = 43.2 bits (88), Expect(2) = 4e-032
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2 / -3
Query: 495 PEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREE 385
P+ +E + YV RY TP++ITENGY + + + E
Sbjct: 722 PQGMEKIVTYVKTRYNNTPMFITENGYGELDNPNNTE 612
>gb|BQ123306.1|BQ123306 EST608882 GLSD Medicago truncatula cDNA clone pGLSD-31P23, mRNA
sequence
Length = 870
Score = 129 bits (276), Expect(2) = 7e-032
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV +G ++VP + +I Y+ YK ++++ENG + + + + D
Sbjct: 458 NGVPVGPRAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTT 637
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY +GY+T L KA+ +GANV GY W+LLDNFEW GY ++G+ +VDF T +RT +M
Sbjct: 638 RINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKM 817
Query: 186 SARWYQGFLT 157
SA W++ LT
Sbjct: 818 SAYWFKQLLT 847
Score = 29.5 bits (58), Expect(2) = 7e-032
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2 / +2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
+E+ L++ DF+G+N YT Y D
Sbjct: 311 KEEVKLVKGSIDFVGINQYTTYYMYD 388
>gb|BF518937.1|BF518937 EST456330 DSIL Medicago truncatula cDNA clone pDSIL-19E5, mRNA
sequence
Length = 476
Score = 99.6 bits (211), Expect(2) = 9e-031
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2 / +3
Query: 387 ELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDT 208
+L+ D +R Y + Y+ L +A+R GA+VRGY VW+L DNFEW GY K+GLY+VD T
Sbjct: 231 DLLHDFKRIEYHKAYLAALLRAMRKGADVRGYMVWSLFDNFEWNSGYDKKFGLYYVDRQT 410
Query: 207 QERTXRMSARWYQGFL 160
ER ++S W+ FL
Sbjct: 411 LERIPKLSVEWFSSFL 458
Score = 55.6 bits (115), Expect(2) = 9e-031
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
DG+ IG T + FF VP+ +E + Y+ +Y P+YITENGY
Sbjct: 66 DGIPIGDQTGMKWFFVVPKGMEKIVDYIKIKYHNMPMYITENGY 197
>gb|BQ148753.1|BQ148753 NF082B09FL1F1076 Developing flower Medicago truncatula cDNA clone
NF082B09FL 5', mRNA sequence
Length = 700
Score = 123 bits (263), Expect(2) = 4e-030
Identities = 50/130 (38%), Positives = 76/130 (58%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV +G ++VP + +I Y+ YK ++++ENG + + + + D
Sbjct: 291 NGVPVGPRAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTT 470
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY +GY+T L KA+ +GANV GY W+LLDNFEW GY ++G+ +VDF T + T M
Sbjct: 471 RINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKXTPXM 650
Query: 186 SARWYQGFLT 157
SA W + LT
Sbjct: 651 SAYWXKQLLT 680
Score = 29.5 bits (58), Expect(2) = 4e-030
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2 / +3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
+E+ L++ DF+G+N YT Y D
Sbjct: 144 KEEVKLVKGSIDFVGINQYTTYYMYD 221
>gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete sequence
Length = 125561
Score = 98.2 bits (208), Expect(4) = 4e-029
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = -2 / -3
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
R GA+VRGYF W+LLDNFEW +G+ +++GLYHVDF TQ+RT ++SA WY+ F+
Sbjct: 82353 REGADVRGYFAWSLLDNFEWLYGFTVRFGLYHVDFATQKRTPKLSASWYKHFI 82195
Score = 94.5 bits (200), Expect(4) = 2e-028
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = -2 / -1
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
R GA+VRGYF W+LLDNFEW +GY ++YG +HVD+ T +RT R+SA WY+ F+
Sbjct: 72446 RKGADVRGYFAWSLLDNFEWIYGYTVRYGFHHVDYATLKRTPRLSASWYKQFI 72288
Score = 41.4 bits (84), Expect(4) = 4e-029
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / -3
Query: 663 DFIGLNHYTAIYARDCLRSPCNLG 592
DFIG+NHY Y +DC+ S C G
Sbjct: 86721 DFIGINHYAGYYVKDCISSVCESG 86650
Score = 39.6 bits (80), Expect(4) = 2e-028
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2 / -1
Query: 522 TALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
T F P+ +E + YV RY TP++ITENG
Sbjct: 73070 TPFTWFNIYPQGMEKTVTYVKDRYNNTPMFITENG 72966
Score = 38.6 bits (78), Expect(4) = 2e-028
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2 / -2
Query: 663 DFIGLNHYTAIYARDCLRSPCN 598
DFIG+N+YT+ Y +DC+ + C+
Sbjct: 73312 DFIGINYYTSFYVQDCIYTKCD 73247
Score = 36.8 bits (74), Expect(4) = 4e-029
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / -2
Query: 495 PEAIELAIQYVNGRYKGTPVYITENG 418
P+ ++ + YV RY TP++ITENG
Sbjct: 83002 PQGMKKTLTYVKDRYNNTPMFITENG 82925
Score = 35.4 bits (71), Expect(4) = 2e-028
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 762 ILGDYPGAMREILGSDLPTFTAEEKALLLR 673
I G YP M +LGS LP F++ EK L++
Sbjct: 73408 IFGKYPKEMENVLGSLLPKFSSNEKKKLMK 73319
Score = 34.5 bits (69), Expect(4) = 4e-029
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2 / -3
Query: 756 GDYPGAMREILGSDLPTFTAEEKALLLR 673
G YP M ILGS LP F++ +KA L R
Sbjct: 86811 GKYPKEMEVILGSTLPKFSSNDKAKLNR 86728
>gb|CA989727.1|CA989727 EST643235 GLSD Medicago truncatula cDNA clone pGLSD-42H3, mRNA
sequence
Length = 493
Score = 129 bits (277), Expect = 4e-029
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV +G ++VP + +I Y+ YK ++++ENG + + + + D
Sbjct: 104 NGVPVGPRAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTT 283
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY +GY+T L KA+ +GANV GY W+LLDNFEW GY ++G+ +VDF T +RT +M
Sbjct: 284 RINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFQTLKRTPKM 463
Query: 186 SARWYQGFLT 157
SA W++ LT
Sbjct: 464 SAYWFKQLLT 493
>gb|CA989762.1|CA989762 EST643270 GLSD Medicago truncatula cDNA clone pGLSD-42N15, mRNA
sequence
Length = 636
Score = 129 bits (276), Expect = 6e-029
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV +G ++VP + +I Y+ YK ++++ENG + + + + D
Sbjct: 106 NGVPVGPRAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTT 285
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY +GY+T L KA+ +GANV GY W+LLDNFEW GY ++G+ +VDF T +RT +M
Sbjct: 286 RINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKM 465
Query: 186 SARWYQGFLT 157
SA W++ LT
Sbjct: 466 SAYWFKQLLT 495
>gb|CX526998.1|CX526998 s13dNF37H05AT048_514508 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 620
Score = 129 bits (276), Expect = 6e-029
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = -2 / -3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV +G ++VP + +I Y+ YK ++++ENG + + + + D
Sbjct: 573 NGVPVGPRAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTT 394
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY +GY+T L KA+ +GANV GY W+LLDNFEW GY ++G+ +VDF T +RT +M
Sbjct: 393 RINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKM 214
Query: 186 SARWYQGFLT 157
SA W++ LT
Sbjct: 213 SAYWFKQLLT 184
>gb|CX538685.1|CX538685 s13dNF0ID01GS010_460622 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 547
Score = 126 bits (269), Expect = 6e-028
Identities = 48/116 (41%), Positives = 74/116 (63%)
Frame = -2 / +2
Query: 504 FDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSK 325
++VP + +I Y+ YK ++++ENG + + + + D R NY +GY+T L K
Sbjct: 32 YNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTTRINYYKGYLTQLKK 211
Query: 324 ALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFLT 157
A+ +GANV GY W+LLDNFEW GY ++G+ +VDF T +RT +MSA W++ LT
Sbjct: 212 AIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAYWFKQLLT 379
>gb|CA990354.1|CA990354 EST643862 GESD Medicago truncatula cDNA clone GESD-28K8, mRNA
sequence
Length = 649
Score = 82.2 bits (173), Expect(3) = 4e-025
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = -2 / +1
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVD 217
S EE + D R +Y ++ Y+ A++NG N+RGYF W+LLDNFEW+ GY +++G+ VD
Sbjct: 319 SLEEALMDTYRIDYYHRHLFYIRSAIKNGVNIRGYFAWSLLDNFEWSSGYTVRFGINFVD 498
Query: 216 F 214
+
Sbjct: 499 Y 501
Score = 37.3 bits (75), Expect(3) = 4e-025
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -2 / +1
Query: 699 AEEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYEGNAFVSATGERD 547
++++A LL+ DF+GLN+YT+ YA + + SY ++ + T ER+
Sbjct: 13 SKKQARLLKGSFDFLGLNYYTSNYATNAPQLRNGRRSYNTDSHANLTTERN 165
Score = 34.5 bits (69), Expect(3) = 4e-025
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSD 400
+G+ IG A + P+ I+ + ++ Y +YITENG +++D
Sbjct: 163 NGIPIGPRAASNWLYVYPKGIQELLLHIKKVYNNPLIYITENGIDEFND 309
>gb|AW773684.1|AW773684 EST332670 KV3 Medicago truncatula cDNA clone pKV3-15F3, mRNA
sequence
Length = 615
Score = 115 bits (245), Expect = 1e-024
Identities = 40/79 (50%), Positives = 61/79 (77%)
Frame = -2 / -2
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVD 217
+ E+ ++D RKNY+ G++ L +A+R GA+VRGYF W++LDNFEW GY +++GL+HVD
Sbjct: 572 TEEQYLNDFDRKNYMAGHLLSLLEAIRKGADVRGYFAWSMLDNFEWLQGYTVRFGLHHVD 393
Query: 216 FDTQERTXRMSARWYQGFL 160
+ T +RT R+SA WY+ F+
Sbjct: 392 YATLKRTPRLSANWYKVFI 336
>gb|AL383694.1|AL383694 MtBC16A07R1 MtBC Medicago truncatula cDNA clone MtBC16A07 T7, mRNA
sequence
Length = 495
Score = 114 bits (243), Expect = 2e-024
Identities = 40/77 (51%), Positives = 59/77 (76%)
Frame = -2 / +1
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
E+ ++D +R Y++ +I LS A+R GA+VRGYF W+LLDNFEW +GY ++YG +HVD+
Sbjct: 46 EDQLNDFKRIKYMKSHIEALSTAIRKGADVRGYFAWSLLDNFEWIYGYTVRYGFHHVDYA 225
Query: 210 TQERTXRMSARWYQGFL 160
T +RT R+SA WY+ F+
Sbjct: 226 TLKRTPRLSASWYKQFI 276
>gb|BE942518.1|BE942518 EST422097 MGHG Medicago truncatula cDNA clone pMGHG-8D20, mRNA
sequence
Length = 393
Score = 113 bits (241), Expect = 4e-024
Identities = 43/88 (48%), Positives = 62/88 (70%)
Frame = -2 / +1
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G + S + E ++DV+R YL Y+ L+ A+R GA+V+GYFVW++LDNFEW GY +
Sbjct: 16 GTSESSYPTTEYELNDVKRVEYLSSYLDSLATAIRKGADVKGYFVWSILDNFEWNHGYSI 195
Query: 240 KYGLYHVDFDTQERTXRMSARWYQGFLT 157
++GL+HVDF T RT R SA WY+ F++
Sbjct: 196 RFGLHHVDFATLNRTPRGSAFWYKNFIS 279
>gb|BE942787.1|BE942787 EST422366 MGHG Medicago truncatula cDNA clone pMGHG-9B23, mRNA
sequence
Length = 608
Score = 113 bits (241), Expect = 4e-024
Identities = 43/88 (48%), Positives = 62/88 (70%)
Frame = -2 / +3
Query: 420 GYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRL 241
G + S + E ++DV+R YL Y+ L+ A+R GA+V+GYFVW++LDNFEW GY +
Sbjct: 183 GTSESSYPTTEYELNDVKRVEYLSSYLDSLATAIRKGADVKGYFVWSILDNFEWNHGYSI 362
Query: 240 KYGLYHVDFDTQERTXRMSARWYQGFLT 157
++GL+HVDF T RT R SA WY+ F++
Sbjct: 363 RFGLHHVDFATLNRTPRGSAFWYKNFIS 446
>gb|CG952158.1|CG952158 MBEGR78TR mth2 Medicago truncatula genomic clone 52M12, DNA
sequence
Length = 871
Score = 93.2 bits (197), Expect(2) = 6e-023
Identities = 32/54 (59%), Positives = 44/54 (81%)
Frame = -2 / -1
Query: 321 LRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
+R GA+VRGYF W+LLDNFEW GY +++GL+HVD+ T +RT R+SA WY+ F+
Sbjct: 268 IRKGADVRGYFAWSLLDNFEWLQGYTVRFGLHHVDYATLKRTPRLSANWYKEFI 107
Score = 38.2 bits (77), Expect(2) = 6e-023
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2 / -1
Query: 495 PEAIELAIQYVNGRYKGTPVYITENG 418
P+ +E + YV RY TP++ITENG
Sbjct: 724 PQGMEKIVTYVKTRYNNTPMFITENG 647
>gb|BE942254.1|BE942254 EST421833 MGHG Medicago truncatula cDNA clone pMGHG-7P12, mRNA
sequence
Length = 580
Score = 74.8 bits (157), Expect(3) = 6e-022
Identities = 24/50 (48%), Positives = 38/50 (76%)
Frame = -2 / +3
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGY 247
S+++ + D +R Y GY++YL ++++G NV+GYF W+LLDN+EWA GY
Sbjct: 426 SKKDALKDEKRIRYFSGYLSYLQASIKDGCNVKGYFAWSLLDNWEWAAGY 575
Score = 36.8 bits (74), Expect(3) = 6e-022
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2 / +3
Query: 699 AEEKALLLRYKADFIGLNHYTAIYARD 619
+ +A L++ DF+G+NHYT YAR+
Sbjct: 114 SSSEAALVKGSLDFVGINHYTTFYARN 194
Score = 34.1 bits (68), Expect(3) = 6e-022
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2 / +3
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENG 418
VP+++ + Y+ +Y PV+ITENG
Sbjct: 318 VPQSMRTLMNYIKQKYGNPPVFITENG 398
>gb|CA920978.1|CA920978 EST638696 MTUS Medicago truncatula cDNA clone MTUS-34C12, mRNA
sequence
Length = 765
Score = 73.5 bits (154), Expect(3) = 1e-020
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -2 / -1
Query: 396 SREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVD 217
S +E + D R +Y ++ YL A+ GANV+GY++W+L DNFEW GY +++G+ VD
Sbjct: 441 SVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVD 262
Query: 216 F 214
+
Sbjct: 261 Y 259
Score = 34.5 bits (69), Expect(3) = 1e-020
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSD 400
+G IG A + P I + Y +Y +YITENG ++SD
Sbjct: 597 NGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSD 451
Score = 30.9 bits (61), Expect(3) = 1e-020
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2 / -1
Query: 690 KALLLRYKADFIGLNHYTAIYARD 619
+A LL DFIGLN+Y++ YA D
Sbjct: 738 QARLLIGSFDFIGLNYYSSTYASD 667
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 589,720,395
Number of Sequences: 392609
Number of extensions: 6176727
Number of successful extensions: 28511
Number of sequences better than 1.0e-020: 24
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 26847253785
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)