TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone m... 154 4e-068
gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula g... 149 2e-059
gb|CG961263.1|CG961263 MBEJP43TRB mth2 Medicago truncatula ... 148 2e-059
gb|CG934104.1|CG934104 MBENC70TR mth2 Medicago truncatula g... 145 1e-058
gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medi... 200 1e-056
gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell cultu... 200 2e-054
gb|AC127169.13| Medicago truncatula clone mth2-36n3, comple... 132 5e-048
gb|AC144618.7| Medicago truncatula clone mth2-21d12, comple... 143 1e-047
emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-1... 143 1e-047
gb|AY308955.1| Medicago truncatula cellulase mRNA, complete... 166 4e-045
gb|BQ165568.1|BQ165568 EST611437 KVKC Medicago truncatula c... 166 4e-040
gb|CA922432.1|CA922432 EST640150 MTUS Medicago truncatula c... 162 7e-039
gb|AC150784.20| Medicago truncatula clone mth2-134j11, WORK... 122 6e-037
gb|BF649782.1|BF649782 NF084A11EC1F1083 Elicited cell cultu... 99 2e-036
gb|CA921503.1|CA921503 EST639221 MTUS Medicago truncatula c... 89 1e-029
gb|BM779887.1|BM779887 EST590463 KV2 Medicago truncatula cD... 89 1e-029
gb|AL379245.1|AL379245 MtBB44B11F1 MtBB Medicago truncatula... 89 1e-029
gb|BI310382.1|BI310382 EST5312132 GESD Medicago truncatula ... 94 8e-028
gb|AJ499329.1|AJ499329 AJ499329 MTGIM Medicago truncatula c... 122 1e-026
gb|BG588186.1|BG588186 EST489995 MHRP- Medicago truncatula ... 83 2e-026
gb|BM779993.1|BM779993 EST590569 KV2 Medicago truncatula cD... 84 5e-025
emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2... 78 6e-025
gb|BE203347.1|BE203347 EST403369 KV1 Medicago truncatula cD... 102 7e-025
gb|BF641734.1|BF641734 NF067D05IN1F1045 Insect herbivory Me... 75 4e-024
gb|AW683463.1|AW683463 NF012E11LF1F1086 Developing leaf Med... 75 4e-024
gb|BF648512.1|BF648512 NF048E01EC1F1005 Elicited cell cultu... 75 2e-023
gb|BI272848.1|BI272848 NF027G05FL1F1039 Developing flower M... 110 4e-023
emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1... 68 8e-023
emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4... 73 1e-022
gb|AL382561.1|AL382561 MtBC08C03F1 MtBC Medicago truncatula... 100 1e-022
gb|BI272912.1|BI272912 NF091E12FL1F1098 Developing flower M... 74 2e-022
gb|BI310445.1|BI310445 EST5312195 GESD Medicago truncatula ... 107 3e-022
gb|CA917420.1|CA917420 EST641567 GPOD Medicago truncatula c... 107 3e-022
>gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone mth2-193p1, complete
sequence
Length = 120579
Score = 154 bits (331), Expect(4) = 4e-068
Identities = 59/93 (63%), Positives = 71/93 (76%)
Frame = -3 / +2
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N VKY+C GG+KWR+S K +PN+L
Sbjct: 25067 QIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKNKVKYNCKGGWKWRESSKPNPNIL 25246
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMV GPD++DGF D R T +GNAG
Sbjct: 25247 VGAMVAGPDRHDGFHDVRKNYNYTEPTLAGNAG 25345
Score = 105 bits (225), Expect(4) = 4e-068
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = -3 / +1
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ NHGR QPLQYVV +FLA LY+DY++A + PGWYCGPNF +T LREFAR+Q+
Sbjct: 24544 GGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYCGPNFFSTEKLREFARTQVR 24723
Query: 564 YIL 556
+L
Sbjct: 24724 DML 24732
Score = 89.5 bits (189), Expect(3) = 2e-025
Identities = 45/77 (58%), Positives = 47/77 (61%)
Frame = +2 / -1
Query: 341 RESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPN 520
R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G LP
Sbjct: 25299 RTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**LPK 25120
Query: 521 PTT*LIFLGLSPRM*LI 571
PTT*LIF G PRM* I
Sbjct: 25119 PTT*LIFRGFLPRM*SI 25069
Score = 57.0 bits (118), Expect(4) = 4e-068
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -2 / +2
Query: 859 MFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
+FL+PGYPY L +HN TS+ MC Y P F +FN T G
Sbjct: 24302 LFLSPGYPYEEILRTFHNQTSIVMCSYLPVFTSFNRTKG 24418
Score = 47.3 bits (97), Expect(3) = 2e-025
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2 / -2
Query: 578 LANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
LANSR V K GPQY PG +K TTY G LPW PP
Sbjct: 24710 LANSRSFSVEKKLGPQYHPGVSAASR*SLYRVAKKAALTTYWRG*GLPWFN*IKPP 24543
Score = 37.3 bits (75), Expect(3) = 2e-025
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3 / -1
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRN 857
V LK K G+ HM LV LW SYG PGL+N
Sbjct: 24411 VLLKLVKTGR*EHMTMLV*LWKVLRISSYGYPGLKN 24304
Score = 27.6 bits (54), Expect(4) = 4e-068
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNT+FSAVP P
Sbjct: 25391 IDKNTLFSAVPPMFP 25435
>gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula genomic clone 77J22, DNA
sequence
Length = 930
Score = 149 bits (319), Expect(2) = 2e-059
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = -3 / +2
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N VKY+C GG+KWR+S K +PN+L
Sbjct: 665 QIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKNKVKYNCKGGWKWRESSKPNPNIL 844
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSR 316
GAMV GPD++DGF D R T+ S+
Sbjct: 845 VGAMVAGPDRHDGFHDVRKTTTTQSQ 922
Score = 105 bits (225), Expect(2) = 2e-059
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = -3 / +1
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ NHGR QPLQYVV +FLA LY+DY++A + PGWYCGPNF +T LREFAR+Q+
Sbjct: 142 GGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYCGPNFFSTEKLREFARTQVR 321
Query: 564 YIL 556
+L
Sbjct: 322 DML 330
Score = 91.3 bits (193), Expect(2) = 8e-025
Identities = 46/79 (58%), Positives = 48/79 (60%)
Frame = +2 / -1
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
V R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G L
Sbjct: 903 VFRTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**L 724
Query: 515 PNPTT*LIFLGLSPRM*LI 571
P PTT*LIF G PRM* I
Sbjct: 723 PKPTT*LIFRGFLPRM*SI 667
Score = 47.3 bits (97), Expect(2) = 8e-025
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2 / -2
Query: 578 LANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
LANSR V K GPQY PG +K TTY G LPW PP
Sbjct: 308 LANSRSFSVEKKLGPQYHPGVSAASR*SLYRVAKKAALTTYWRG*GLPWFN*IKPP 141
>gb|CG961263.1|CG961263 MBEJP43TRB mth2 Medicago truncatula genomic clone 69H14, DNA
sequence
Length = 918
Score = 148 bits (318), Expect(2) = 2e-059
Identities = 55/81 (67%), Positives = 67/81 (82%)
Frame = -3 / +2
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N VKY+C GG+KWR+S K +PN+L
Sbjct: 665 QIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKNKVKYNCKGGWKWRESSKPNPNIL 844
Query: 393 GGAMVGGPDKNDGFKDSRNTS 331
GAMV GPD++DGF D R T+
Sbjct: 845 VGAMVAGPDRHDGFHDVRKTT 907
Score = 105 bits (225), Expect(2) = 2e-059
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = -3 / +1
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ NHGR QPLQYVV +FLA LY+DY++A + PGWYCGPNF +T LREFAR+Q+
Sbjct: 142 GGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYCGPNFFSTEKLREFARTQVR 321
Query: 564 YIL 556
+L
Sbjct: 322 DML 330
Score = 91.3 bits (193), Expect(2) = 8e-025
Identities = 46/79 (58%), Positives = 48/79 (60%)
Frame = +2 / -1
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
V R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G L
Sbjct: 903 VFRTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**L 724
Query: 515 PNPTT*LIFLGLSPRM*LI 571
P PTT*LIF G PRM* I
Sbjct: 723 PKPTT*LIFRGFLPRM*SI 667
Score = 47.3 bits (97), Expect(2) = 8e-025
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2 / -2
Query: 578 LANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
LANSR V K GPQY PG +K TTY G LPW PP
Sbjct: 308 LANSRSFSVEKKLGPQYHPGVSAASR*SLYRVAKKAALTTYWRG*GLPWFN*IKPP 141
>gb|CG934104.1|CG934104 MBENC70TR mth2 Medicago truncatula genomic clone 6L19, DNA sequence
Length = 882
Score = 145 bits (312), Expect(2) = 1e-058
Identities = 54/78 (69%), Positives = 65/78 (83%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N VKY+C GG+KWR+S K +PN+L
Sbjct: 639 QIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKNKVKYNCKGGWKWRESSKPNPNIL 818
Query: 393 GGAMVGGPDKNDGFKDSR 340
GAMV GPD++DGF D R
Sbjct: 819 VGAMVAGPDRHDGFHDVR 872
Score = 105 bits (225), Expect(2) = 1e-058
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = -3 / +2
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ NHGR QPLQYVV +FLA LY+DY++A + PGWYCGPNF +T LREFAR+Q+
Sbjct: 116 GGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYCGPNFFSTEKLREFARTQVR 295
Query: 564 YIL 556
+L
Sbjct: 296 DML 304
Score = 89.5 bits (189), Expect(2) = 3e-024
Identities = 45/77 (58%), Positives = 47/77 (61%)
Frame = +2 / -3
Query: 341 RESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPN 520
R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G LP
Sbjct: 871 RTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**LPK 692
Query: 521 PTT*LIFLGLSPRM*LI 571
PTT*LIF G PRM* I
Sbjct: 691 PTT*LIFRGFLPRM*SI 641
Score = 47.3 bits (97), Expect(2) = 3e-024
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = +2 / -1
Query: 578 LANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
LANSR V K GPQY PG +K TTY G LPW PP
Sbjct: 282 LANSRSFSVEKKLGPQYHPGVSAASR*SLYRVAKKAALTTYWRG*GLPWFN*IKPP 115
>gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medicago truncatula cDNA clone
NF026G11PH 5', mRNA sequence
Length = 639
Score = 200 bits (431), Expect(3) = 1e-056
Identities = 75/114 (65%), Positives = 89/114 (78%)
Frame = -3 / +3
Query: 636 PGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGV 457
PGWYCGPNF +T LREFAR+QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N V
Sbjct: 69 PGWYCGPNFFSTEKLREFARTQIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKNKV 248
Query: 456 KYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
KY+C GG+KWR+S K +PN+L GAMV GPD++DGF D R T +GNAG
Sbjct: 249 KYNCKGGWKWRESSKPNPNILVGAMVAGPDRHDGFHDVRKNYNYTEPTLAGNAG 410
Score = 115 bits (245), Expect(2) = 3e-025
Identities = 58/102 (56%), Positives = 62/102 (60%)
Frame = +2 / -3
Query: 341 RESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPN 520
R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G LP
Sbjct: 364 RTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**LPK 185
Query: 521 PTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLT 646
PTT*LIF G PRM* I LANSR V K GPQY PG ++
Sbjct: 184 PTT*LIFRGFLPRM*SICVLANSRSFSVEKKLGPQYHPGGIS 59
Score = 32.7 bits (65), Expect(3) = 1e-056
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3 / +2
Query: 702 QYVVANSFLAALYADYMEAVN 640
QYVV +FLA LY+DY++A +
Sbjct: 2 QYVVNAAFLATLYSDYLDAAD 64
Score = 27.6 bits (54), Expect(3) = 1e-056
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNT+FSAVP P
Sbjct: 456 IDKNTLFSAVPPMFP 500
Score = 22.1 bits (42), Expect(2) = 3e-025
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAE VFLS
Sbjct: 499 GNIGGTAEKRVFLS 458
>gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell culture Medicago truncatula cDNA
clone NF047E08EC 5', mRNA sequence
Length = 647
Score = 200 bits (432), Expect(3) = 2e-054
Identities = 75/116 (64%), Positives = 90/116 (77%)
Frame = -3 / +2
Query: 642 NVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHN 463
+ PGWYCGPNF +T LREFAR+QI+YILG NP+KMSYVVGFG+ YP+HVHHR AS P N
Sbjct: 53 DTPGWYCGPNFFSTEKLREFARTQIDYILGKNPRKMSYVVGFGNHYPKHVHHRAASIPKN 232
Query: 462 GVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
VKY+C GG+KWR+S K +PN+L GAMV GPD++DGF D R T +GNAG
Sbjct: 233 KVKYNCKGGWKWRESSKPNPNILVGAMVAGPDRHDGFHDVRKNYNYTEPTLAGNAG 400
Score = 114 bits (244), Expect(2) = 4e-025
Identities = 58/99 (58%), Positives = 60/99 (60%)
Frame = +2 / -3
Query: 341 RESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPN 520
R S KPS LSGP TMAP S G F S H PP+ YLT G+DA W TC G LP
Sbjct: 354 RTS*KPSCLSGPATMAPTSIFGFGFDDSLHFHPPLQLYLTLFFGIDAALWWTCFG**LPK 175
Query: 521 PTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
PTT*LIF G PRM* I LANSR V K GPQY PG
Sbjct: 174 PTT*LIFRGFLPRM*SICVLANSRSFSVEKKLGPQYHPG 58
Score = 27.6 bits (54), Expect(3) = 2e-054
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNT+FSAVP P
Sbjct: 446 IDKNTLFSAVPPMFP 490
Score = 24.9 bits (48), Expect(3) = 2e-054
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -3 / +1
Query: 684 SFLAALYADYMEA 646
+FLA LY+DY++A
Sbjct: 10 AFLATLYSDYLDA 48
Score = 22.1 bits (42), Expect(2) = 4e-025
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAE VFLS
Sbjct: 489 GNIGGTAEKRVFLS 448
>gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete sequence
Length = 124554
Score = 132 bits (283), Expect(3) = 5e-048
Identities = 53/104 (50%), Positives = 70/104 (67%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
Q++YI+ NP MSY+VG+G+K+PRHVHHRGAS P++ YSC G+KWRD+ +PN +
Sbjct: 102168 QMDYIMCKNPMNMSYIVGYGNKFPRHVHHRGASIPNDDKHYSCIEGWKWRDTPNRNPNNI 102347
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXXXXXLTSS 262
GAMVGGP+ D F D RN + T +GNAG LTS+
Sbjct: 102348 VGAMVGGPNGFDQFYDLRNNNSYTEPTLAGNAGLVAALISLTST 102479
Score = 83.5 bits (176), Expect(3) = 5e-048
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = -3 / +2
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG NHG LQYVV SF+A+L+ADYM+A VPGWYC N+ + + L+ FA SQ++
Sbjct: 101651 GGFIQLNHGYPNSLQYVVNASFMASLFADYMKAQGVPGWYCNHNYFSISVLKAFATSQVS 101830
Query: 564 Y 562
Y
Sbjct: 101831 Y 101833
Score = 35.0 bits (70), Expect(3) = 5e-048
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 859 MFLNPGYPYXXSLAGYHNATSLNMC 785
+ L GYPY L+ YH +TSL MC
Sbjct: 101402 LILVSGYPYEEILSMYHESTSLTMC 101476
>gb|AC144618.7| Medicago truncatula clone mth2-21d12, complete sequence
Length = 106554
Score = 143 bits (307), Expect(2) = 1e-047
Identities = 58/112 (51%), Positives = 72/112 (64%)
Frame = -3 / -3
Query: 597 DLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDS 418
D Q++YI+G NP MSY+VG+G K+PRHVHHRGAS P++ YSCTGG+KWRDS
Sbjct: 90565 DFSYIPMKQMDYIMGKNPMNMSYIVGYGEKFPRHVHHRGASIPNDHKNYSCTGGWKWRDS 90386
Query: 417 KKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXXXXXLTSS 262
+PN + GAMVGGP+ D F DSR T +GNAG LTS+
Sbjct: 90385 PDRNPNNVTGAMVGGPNPFDQFHDSRKNYNYTEPTLAGNAGLVAALISLTST 90230
Score = 79.0 bits (166), Expect(2) = 1e-047
Identities = 35/77 (45%), Positives = 40/77 (51%)
Frame = -2 / -3
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
T+ +PK +K D V SW LP A RMFLNPGYPY L+ YHN TSL
Sbjct: 91468 TNPDVPKNSKAFYMKPDLSVLSWDNKLPAAMLLLTRVRMFLNPGYPYEDMLSMYHNVTSL 91289
Query: 793 NMCMYFPGFAAFNFTXG 743
MC Y F F +T G
Sbjct: 91288 TMCSYLHQFNVFKWTNG 91238
Score = 70.7 bits (148), Expect(3) = 6e-022
Identities = 35/67 (52%), Positives = 40/67 (59%)
Frame = +2 / +3
Query: 371 GPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGL 550
GPPT+AP + LG LSRH PPVHE G+DAP TC G P PT *L+F+G
Sbjct: 90339 GPPTIAPVTLLGFRSGLSRHFQPPVHE*FL*SFGIDAPL**TCLGNFSPYPTM*LMFIGF 90518
Query: 551 SPRM*LI 571
P M* I
Sbjct: 90519 LPMM*SI 90539
Score = 46.0 bits (94), Expect(3) = 6e-022
Identities = 24/59 (40%), Positives = 28/59 (47%)
Frame = +3 / +3
Query: 786 HMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSRMLXXXLAXLGS 962
HM+RLV LW S S G*PGLRN+ QL T KS + L LG+
Sbjct: 91281 HMVRLVTLWYILSISS*G*PGLRNILTLVSSNIAAGNLLSQLKTLKSGFI*NALEFLGT 91457
Score = 45.5 bits (93), Expect(3) = 6e-022
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +2 / +2
Query: 572 *DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
*++AN R+ + K GPQY PGT + TTY C PW PP
Sbjct: 90959 *EVANDFRTDIGKKLGPQYHPGTPLASI*SAKRDAKNAALTTYWRDCGCPWFNCINPP 91132
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3,
complete sequence
Length = 141577
Score = 143 bits (307), Expect(2) = 1e-047
Identities = 58/112 (51%), Positives = 72/112 (64%)
Frame = -3 / +1
Query: 597 DLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDS 418
D Q++YI+G NP MSY+VG+G K+PRHVHHRGAS P++ YSCTGG+KWRDS
Sbjct: 136042 DFSYIPMKQMDYIMGKNPMNMSYIVGYGEKFPRHVHHRGASIPNDHKNYSCTGGWKWRDS 136221
Query: 417 KKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXXXXXLTSS 262
+PN + GAMVGGP+ D F DSR T +GNAG LTS+
Sbjct: 136222 PDRNPNNVTGAMVGGPNPFDQFHDSRKNYNYTEPTLAGNAGLVAALISLTST 136377
Score = 79.0 bits (166), Expect(2) = 1e-047
Identities = 35/77 (45%), Positives = 40/77 (51%)
Frame = -2 / +1
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
T+ +PK +K D V SW LP A RMFLNPGYPY L+ YHN TSL
Sbjct: 135139 TNPDVPKNSKAFYMKPDLSVLSWDNKLPAAMLLLTRVRMFLNPGYPYEDMLSMYHNVTSL 135318
Query: 793 NMCMYFPGFAAFNFTXG 743
MC Y F F +T G
Sbjct: 135319 TMCSYLHQFNVFKWTNG 135369
Score = 70.7 bits (148), Expect(3) = 1e-021
Identities = 35/67 (52%), Positives = 40/67 (59%)
Frame = +2 / -3
Query: 371 GPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGL 550
GPPT+AP + LG LSRH PPVHE G+DAP TC G P PT *L+F+G
Sbjct: 136268 GPPTIAPVTLLGFRSGLSRHFQPPVHE*FL*SFGIDAPL**TCLGNFSPYPTM*LMFIGF 136089
Query: 551 SPRM*LI 571
P M* I
Sbjct: 136088 LPMM*SI 136068
Score = 46.0 bits (94), Expect(3) = 1e-021
Identities = 24/59 (40%), Positives = 28/59 (47%)
Frame = +3 / -3
Query: 786 HMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSRMLXXXLAXLGS 962
HM+RLV LW S S G*PGLRN+ QL T KS + L LG+
Sbjct: 135326 HMVRLVTLWYILSISS*G*PGLRNILTLVSSNIAAGNLLSQLKTLKSGFI*NALEFLGT 135150
Score = 45.5 bits (93), Expect(3) = 1e-021
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +2 / -2
Query: 572 *DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
*++AN R+ + K GPQY PGT + TTY C PW PP
Sbjct: 135648 *EVANDFRTDIGKKLGPQYHPGTPLASI*SAKRDAKNAALTTYWRDCGCPWFNCINPP 135475
>gb|AY308955.1| Medicago truncatula cellulase mRNA, complete cds
Length = 2074
Score = 166 bits (358), Expect(2) = 4e-045
Identities = 70/150 (46%), Positives = 93/150 (62%)
Frame = -3 / +2
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ + G LQY V SFL+ LY+DY++ + + G C + + + LR+F+ SQ+N
Sbjct: 1373 GGLVIPKPDNGPLLQYAVTASFLSKLYSDYIDHLKISGASCETDTFSVSMLRDFSSSQVN 1552
Query: 564 YILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGA 385
YILG NP KMSY+VG+G K+P VHHR AS P + Y+C G W +SK +P +L GA
Sbjct: 1553 YILGQNPMKMSYLVGYGDKFPVQVHHRSASIPWDKRLYNCDDGKTWLNSKNPNPQVLLGA 1732
Query: 384 MVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
MVGGPD ND F D R+ T S NAG
Sbjct: 1733 MVGGPDTNDHFTDQRSNKRFTEPTISSNAG 1822
Score = 36.8 bits (74), Expect(2) = 4e-045
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -2 / +2
Query: 949 AKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMY 779
AK LD VF W L R F +PG+PY L N+T MC Y
Sbjct: 1172 AKKDETNLDKGVFYWNNKLSAVAVLLTGIRYFRDPGFPYEDVLKFSSNSTHSLMCSY 1342
>gb|BQ165568.1|BQ165568 EST611437 KVKC Medicago truncatula cDNA clone pKVKC-10B7, mRNA
sequence
Length = 781
Score = 166 bits (358), Expect = 4e-040
Identities = 70/150 (46%), Positives = 93/150 (62%)
Frame = -3 / -2
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ + G LQY V SFL+ LY+DY++ + + G C + + + LR+F+ SQ+N
Sbjct: 702 GGLVIPKPDNGPLLQYAVTASFLSKLYSDYIDHLKISGASCETDTFSVSMLRDFSSSQVN 523
Query: 564 YILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGA 385
YILG NP KMSY+VG+G K+P VHHR AS P + Y+C G W +SK +P +L GA
Sbjct: 522 YILGQNPMKMSYLVGYGDKFPVQVHHRSASIPWDKRLYNCDDGKTWLNSKNPNPQVLLGA 343
Query: 384 MVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
MVGGPD ND F D R+ T S NAG
Sbjct: 342 MVGGPDTNDHFTDQRSNKRFTEPTISSNAG 253
>gb|CA922432.1|CA922432 EST640150 MTUS Medicago truncatula cDNA clone MTUS-53E12, mRNA
sequence
Length = 735
Score = 162 bits (349), Expect = 7e-039
Identities = 68/140 (48%), Positives = 89/140 (63%)
Frame = -3 / -1
Query: 714 GQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKM 535
G LQY V SFL+ LY+DY++ + + G C + + + LR+F+ SQ+NYILG NP KM
Sbjct: 672 GPLLQYAVTASFLSKLYSDYIDHLKISGASCETDTFSVSMLRDFSSSQVNYILGQNPMKM 493
Query: 534 SYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDG 355
SY+VG+G K+P VHHR AS P + Y+C G W +SK +P +L GAMVGGPD ND
Sbjct: 492 SYLVGYGDKFPVQVHHRSASIPWDKRLYNCDDGKTWLNSKNPNPQVLLGAMVGGPDTNDH 313
Query: 354 FKDSRNTSGRTSRRWSGNAG 295
F D R+ T S NAG
Sbjct: 312 FTDQRSNKRFTEPTISSNAG 253
>gb|AC150784.20| Medicago truncatula clone mth2-134j11, WORKING DRAFT SEQUENCE
Length = 116850
Score = 122 bits (260), Expect(2) = 6e-037
Identities = 50/93 (53%), Positives = 60/93 (64%)
Frame = -3 / +2
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
Q+NYILG NP KMSY+VG+G K+P VHHR AS P + Y+C G W +SK +P +L
Sbjct: 35372 QVNYILGQNPMKMSYLVGYGDKFPVQVHHRSASIPWDKRLYNCDDGKTWLNSKNPNPQVL 35551
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMVGGPD ND F D R+ T S NAG
Sbjct: 35552 LGAMVGGPDTNDHFTDQRSNKRFTEPTISSNAG 35650
Score = 54.2 bits (112), Expect(2) = 6e-037
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = -3 / +2
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQIN 565
GG+ + G LQY V SFL+ LY+DY++ + + G C + + + LR+F+ SQ+N
Sbjct: 35117 GGLVIPKPDNGPLLQYAVTASFLSKLYSDYIDHLKISGASCETDTFSVSMLRDFSSSQVN 35296
>gb|BF649782.1|BF649782 NF084A11EC1F1083 Elicited cell culture Medicago truncatula cDNA
clone NF084A11EC 5', mRNA sequence
Length = 666
Score = 98.7 bits (209), Expect(2) = 2e-036
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARS 574
KGG+ NHGR QPLQYVV +FLA LY+DY++A + PGWY GPNF +T LREFAR+
Sbjct: 493 KGGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYWGPNFFSTEKLREFART 666
Score = 76.2 bits (160), Expect(2) = 2e-036
Identities = 31/61 (50%), Positives = 37/61 (60%)
Frame = -2 / +1
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
D+ VFSW L GAQ R+FL+PGYPY L +HN TS+ MC Y P F +FN T
Sbjct: 316 DYGVFSWDNKLAGAQVLLSRLRLFLSPGYPYEEILRTFHNQTSIVMCSYLPVFTSFNRTK 495
Query: 745 G 743
G
Sbjct: 496 G 498
>gb|CA921503.1|CA921503 EST639221 MTUS Medicago truncatula cDNA clone MTUS-41B6, mRNA
sequence
Length = 838
Score = 89.0 bits (188), Expect(3) = 1e-029
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -3 / -2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG + +T +L + A+ Q++YILGDNP KMSY+VGFG KYP+H+HHRG+S P
Sbjct: 690 CGTSKITEQNLIKLAKKQVDYILGDNPTKMSYMVGFGEKYPKHIHHRGSSLP 535
Score = 52.8 bits (109), Expect(3) = 1e-029
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3 / -2
Query: 450 SCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
SC G+++ S +PN+L GA+VGGPD +D F D RN
Sbjct: 507 SCNNGFQYLHSGSPNPNVLVGAIVGGPDSSDNFSDDRN 394
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3 / -2
Query: 720 GRGQPLQYVVANSFLAALYADYM 652
G LQYV + SFL +YA Y+
Sbjct: 783 GSESNLQYVTSTSFLLLIYAKYL 715
>gb|BM779887.1|BM779887 EST590463 KV2 Medicago truncatula cDNA clone pKV2-53G18, mRNA
sequence
Length = 795
Score = 89.0 bits (188), Expect(3) = 1e-029
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -3 / -3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG + +T +L + A+ Q++YILGDNP KMSY+VGFG KYP+H+HHRG+S P
Sbjct: 694 CGTSKITEQNLIKLAKKQVDYILGDNPTKMSYMVGFGEKYPKHIHHRGSSLP 539
Score = 52.8 bits (109), Expect(3) = 1e-029
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3 / -3
Query: 450 SCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
SC G+++ S +PN+L GA+VGGPD +D F D RN
Sbjct: 511 SCNNGFQYLHSGSPNPNVLVGAIVGGPDSSDNFSDDRN 398
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3 / -3
Query: 720 GRGQPLQYVVANSFLAALYADYM 652
G LQYV + SFL +YA Y+
Sbjct: 787 GSESNLQYVTSTSFLLLIYAKYL 719
>gb|AL379245.1|AL379245 MtBB44B11F1 MtBB Medicago truncatula cDNA clone MtBB44B11 T3, mRNA
sequence
Length = 473
Score = 89.0 bits (188), Expect(3) = 1e-029
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG + +T +L + A+ Q++YILGDNP KMSY+VGFG KYP+H+HHRG+S P
Sbjct: 116 CGTSKITEQNLIKLAKKQVDYILGDNPTKMSYMVGFGEKYPKHIHHRGSSLP 271
Score = 52.8 bits (109), Expect(3) = 1e-029
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3 / +2
Query: 450 SCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
SC G+++ S +PN+L GA+VGGPD +D F D RN
Sbjct: 299 SCNNGFQYLHSGSPNPNVLVGAIVGGPDSSDNFSDDRN 412
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3 / +2
Query: 720 GRGQPLQYVVANSFLAALYADYM 652
G LQYV + SFL +YA Y+
Sbjct: 23 GSESNLQYVTSTSFLLLIYAKYL 91
>gb|BI310382.1|BI310382 EST5312132 GESD Medicago truncatula cDNA clone pGESD7N4 5' end,
mRNA sequence
Length = 579
Score = 93.6 bits (198), Expect(3) = 8e-028
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = -3 / +1
Query: 543 KKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
+KMSYV GFG+ YP+HVHHR AS P N VKY+C GG+KWR+S K +PN+L
Sbjct: 25 RKMSYVDGFGNHYPKHVHHRAASIPKNKVKYNCKGGWKWRESSKPNPNIL 174
Score = 42.3 bits (86), Expect(3) = 8e-028
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3 / +2
Query: 390 GAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMV GPD++DGF D R T +GNAG
Sbjct: 179 GAMVAGPDRHDGFHDVRKNYNYTEPTLAGNAG 274
Score = 27.6 bits (54), Expect(3) = 8e-028
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNT+FSAVP P
Sbjct: 320 IDKNTLFSAVPPMFP 364
>gb|AJ499329.1|AJ499329 AJ499329 MTGIM Medicago truncatula cDNA clone mtgmacc120002g06,
mRNA sequence
Length = 532
Score = 122 bits (261), Expect = 1e-026
Identities = 51/97 (52%), Positives = 62/97 (63%)
Frame = -3 / -2
Query: 585 FARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKAD 406
F+ SQ+NYILG NP KMSY+VG+G K+ VHHR AS P + Y+C G W +SK +
Sbjct: 531 FSSSQVNYILGPNPMKMSYLVGYGDKFAVQVHHRSASIPWDKRLYNCDDGKTWLNSKNPN 352
Query: 405 PNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
P +L GAMVGGPD ND F D R+ T S NAG
Sbjct: 351 PQVLLGAMVGGPDTNDHFTDQRSNKRFTEPTISSNAG 241
>gb|BG588186.1|BG588186 EST489995 MHRP- Medicago truncatula cDNA clone pMHRP-41J5, mRNA
sequence
Length = 723
Score = 82.6 bits (174), Expect(3) = 2e-026
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGV 457
CG +T LR A+ Q++Y+LGDNP KMSY+VG+G +YP+ +HHRG+S P V
Sbjct: 116 CGGTIVTPKRLRTLAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSMAV 283
Score = 50.1 bits (103), Expect(3) = 2e-026
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = -3 / +2
Query: 456 KYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
K C+ G+ S+ +PN+L GA+VGGPD++D F D R+
Sbjct: 293 KIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDKRS 412
Score = 25.8 bits (50), Expect(3) = 2e-026
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 705 LQYVVANSFLAALYADYM 652
+QYV + SFL YA Y+
Sbjct: 38 MQYVTSTSFLLVAYAKYL 91
>gb|BM779993.1|BM779993 EST590569 KV2 Medicago truncatula cDNA clone pKV2-53L17, mRNA
sequence
Length = 730
Score = 83.5 bits (176), Expect(2) = 5e-025
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = -3 / -2
Query: 609 MTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
+T +L + A+ Q++YILGDNP KMSY+VGFG KYP+H+HHRG+S P
Sbjct: 678 ITEQNLIKLAKKQVDYILGDNPTKMSYMVGFGEKYPKHIHHRGSSLP 538
Score = 52.8 bits (109), Expect(2) = 5e-025
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3 / -2
Query: 450 SCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
SC G+++ S +PN+L GA+VGGPD +D F D RN
Sbjct: 510 SCNNGFQYLHSGSPNPNVLVGAIVGGPDSSDNFSDDRN 397
>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE
Length = 131814
Score = 77.6 bits (163), Expect(3) = 6e-025
Identities = 29/52 (55%), Positives = 39/52 (75%)
Frame = -3 / -2
Query: 627 YCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAST 472
+C + N+L FA+SQ++YILG NP MSY+VG+GS +P+ VHHRGAST
Sbjct: 5096 HCQKGEVGPNELLAFAKSQVDYILGSNPMGMSYLVGYGSNFPQRVHHRGAST 4941
Score = 47.8 bits (98), Expect(3) = 6e-025
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -3 / -2
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSR 340
W +S K +PN+L GA+VGGPD D F+D R
Sbjct: 4886 WYESPKPNPNILIGALVGGPDNKDQFRDER 4797
Score = 28.1 bits (55), Expect(3) = 6e-025
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3 / -2
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+QYV +FL A+Y+D++ A N
Sbjct: 5171 MQYVANAAFLLAIYSDHLLATN 5106
>gb|BE203347.1|BE203347 EST403369 KV1 Medicago truncatula cDNA clone pKV1-5A14, mRNA
sequence
Length = 599
Score = 102 bits (218), Expect(2) = 7e-025
Identities = 35/79 (44%), Positives = 58/79 (73%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYV 526
LQY ++ + +++ + N+ G +CG T+++++ FA+SQ++YILG+NP KMSY+
Sbjct: 231 LQYTTTSTMVLFIFSKILNKNNIDGIHCGSTNFTSSEIKAFAKSQVDYILGNNPMKMSYM 410
Query: 525 VGFGSKYPRHVHHRGASTP 469
VG+GSKYP+ +HHRG+S P
Sbjct: 411 VGYGSKYPKQLHHRGSSIP 467
Score = 33.1 bits (66), Expect(2) = 7e-025
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3 / +3
Query: 420 SKKADPNLLGGAMVGGPDKNDGF 352
S +PN+ GA+VGGPD ND F
Sbjct: 528 SSNPNPNIHVGAIVGGPDFNDQF 596
>gb|BF641734.1|BF641734 NF067D05IN1F1045 Insect herbivory Medicago truncatula cDNA clone
NF067D05IN 5', mRNA sequence
Length = 679
Score = 74.8 bits (157), Expect(3) = 4e-024
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++ L FA+SQ++YILGDNP+ SY+VG+G+ YP+ VHHRG+S
Sbjct: 231 CASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSS 380
Score = 46.9 bits (96), Expect(3) = 4e-024
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3 / +3
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SKK++ N+L GA+VGGPD D F D R +T NA
Sbjct: 438 WFSSKKSNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNA 569
Score = 29.0 bits (57), Expect(3) = 4e-024
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 717 RGQPLQYVVANSFLAALYADYM 652
R LQ+ ++SFLA +Y+DY+
Sbjct: 141 RWNNLQFATSSSFLATVYSDYL 206
>gb|AW683463.1|AW683463 NF012E11LF1F1086 Developing leaf Medicago truncatula cDNA clone
NF012E11LF 5', mRNA sequence
Length = 657
Score = 74.8 bits (157), Expect(3) = 4e-024
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++ L FA+SQ++YILGDNP+ SY+VG+G+ YP+ VHHRG+S
Sbjct: 218 CASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSS 367
Score = 46.9 bits (96), Expect(3) = 4e-024
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3 / +2
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SKK++ N+L GA+VGGPD D F D R +T NA
Sbjct: 425 WFSSKKSNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNA 556
Score = 29.0 bits (57), Expect(3) = 4e-024
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3 / +2
Query: 717 RGQPLQYVVANSFLAALYADYM 652
R LQ+ ++SFLA +Y+DY+
Sbjct: 128 RWNNLQFATSSSFLATVYSDYL 193
>gb|BF648512.1|BF648512 NF048E01EC1F1005 Elicited cell culture Medicago truncatula cDNA
clone NF048E01EC 5', mRNA sequence
Length = 486
Score = 74.8 bits (157), Expect(3) = 2e-023
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++ L FA+SQ++YILGDNP+ SY+VG+G+ YP+ VHHRG+S
Sbjct: 78 CASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSS 227
Score = 46.9 bits (96), Expect(3) = 2e-023
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -3 / +3
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SKK++ N+L GA+VGGPD D F D R +T NA
Sbjct: 285 WFSSKKSNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNA 416
Score = 26.7 bits (52), Expect(3) = 2e-023
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3 / +3
Query: 702 QYVVANSFLAALYADYM 652
Q+ ++SFLA +Y+DY+
Sbjct: 3 QFATSSSFLATVYSDYL 53
>gb|BI272848.1|BI272848 NF027G05FL1F1039 Developing flower Medicago truncatula cDNA clone
NF027G05FL 5', mRNA sequence
Length = 576
Score = 110 bits (235), Expect = 4e-023
Identities = 45/102 (44%), Positives = 64/102 (62%)
Frame = -3 / +1
Query: 768 SPPSTSPKGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLR 589
SP +T + L LQ+ VA++FLA++Y+DYM P C + +DLR
Sbjct: 118 SPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLR 297
Query: 588 EFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHN 463
+FARSQ +Y+LG NP+ MS++VG+G +P+ VHHRGAS P N
Sbjct: 298 DFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPAN 423
>emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1-41h18, COMPLETE SEQUENCE
Length = 103321
Score = 68.4 bits (143), Expect(3) = 8e-023
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -3 / +3
Query: 570 INYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
++YILG+NP KMSY+VG+GSKYP+ +HHRG+S P
Sbjct: 41769 VDYILGNNPMKMSYMVGYGSKYPKQLHHRGSSIP 41870
Score = 39.1 bits (79), Expect(3) = 8e-023
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3 / +3
Query: 420 SKKADPNLLGGAMVGGPDKNDGFKDSRN 337
S +PN+ GA+VGGPD ND F D+R+
Sbjct: 41931 SSNPNPNIHVGAIVGGPDFNDQFNDARS 42014
Score = 38.6 bits (78), Expect(3) = 8e-023
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
LQY ++ + +++ + N+ G +CG T+++++ FA+SQ+
Sbjct: 41530 LQYTTTSTMVLFIFSKILNKNNIDGIHCGSTNFTSSEIKAFAKSQV 41667
>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
Length = 194592
Score = 73.5 bits (154), Expect(3) = 1e-022
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / +1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++ FA+SQ++YILG NP MSY+VG+G YP+ VHHRGAS
Sbjct: 99442 CHGGILDHKEILSFAKSQVDYILGSNPMNMSYLVGYGPSYPKRVHHRGAS 99591
Score = 45.5 bits (93), Expect(3) = 1e-022
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3 / +1
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRT 322
W + +PN+L GA+VGGPD D F+D RN +T
Sbjct: 99649 WYSKEDPNPNVLVGALVGGPDWQDNFEDKRNNFMQT 99756
Score = 26.7 bits (52), Expect(3) = 1e-022
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+Q+V SFL +Y+DY++ N
Sbjct: 99364 MQHVSTASFLLTIYSDYLKNTN 99429
>gb|AL382561.1|AL382561 MtBC08C03F1 MtBC Medicago truncatula cDNA clone MtBC08C03 T3, mRNA
sequence
Length = 480
Score = 100 bits (214), Expect(2) = 1e-022
Identities = 35/79 (44%), Positives = 57/79 (72%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYV 526
LQY ++ + + + + N+ G +CG T+++++ FA+SQ++YILG+NP KMSY+
Sbjct: 127 LQYTTTSTMVLFIVSKILNKNNIDGIHCGSTNFTSSEIKAFAKSQVDYILGNNPMKMSYM 306
Query: 525 VGFGSKYPRHVHHRGASTP 469
VG+GSKYP+ +HHRG+S P
Sbjct: 307 VGYGSKYPKQLHHRGSSIP 363
Score = 27.2 bits (53), Expect(2) = 1e-022
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3 / +1
Query: 420 SKKADPNLLGGAMVGGPD 367
S +PN+ GA+VGGPD
Sbjct: 424 SSNPNPNIHVGAIVGGPD 477
>gb|BI272912.1|BI272912 NF091E12FL1F1098 Developing flower Medicago truncatula cDNA clone
NF091E12FL 5', mRNA sequence
Length = 702
Score = 73.9 bits (155), Expect(3) = 2e-022
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG DL A+SQ++Y+LG+NP +MSY+VG+G KYP+ +HHRG++ P
Sbjct: 239 CGNVVAKPCDLINLAKSQVDYVLGNNPLEMSYMVGYGQKYPQKIHHRGSTLP 394
Score = 40.5 bits (82), Expect(3) = 2e-022
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3 / +2
Query: 447 CTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSR 340
C G K+ S + N+L GA+VGGP +D F+DSR
Sbjct: 425 CRDGDKYFQSSTPNINVLIGAIVGGPANDDSFQDSR 532
Score = 30.4 bits (60), Expect(3) = 2e-022
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +2
Query: 705 LQYVVANSFLAALYADYMEAVN 640
LQ+V A SFL +Y YMEA N
Sbjct: 161 LQHVTALSFLLVVYGHYMEANN 226
>gb|BI310445.1|BI310445 EST5312195 GESD Medicago truncatula cDNA clone pGESD8G19 5' end,
mRNA sequence
Length = 725
Score = 107 bits (229), Expect = 3e-022
Identities = 41/81 (50%), Positives = 58/81 (71%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYV 526
LQ+ VA++FLA++Y+DYM P C + +DLR+FARSQ +Y+LG NP+ MS++
Sbjct: 45 LQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFL 224
Query: 525 VGFGSKYPRHVHHRGASTPHN 463
VG+G +P+ VHHRGAS P N
Sbjct: 225 VGYGKNFPQFVHHRGASIPAN 287
>gb|CA917420.1|CA917420 EST641567 GPOD Medicago truncatula cDNA clone GPOD-36I7, mRNA
sequence
Length = 541
Score = 107 bits (229), Expect = 3e-022
Identities = 41/81 (50%), Positives = 58/81 (71%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYV 526
LQ+ VA++FLA++Y+DYM P C + +DLR+FARSQ +Y+LG NP+ MS++
Sbjct: 31 LQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFL 210
Query: 525 VGFGSKYPRHVHHRGASTPHN 463
VG+G +P+ VHHRGAS P N
Sbjct: 211 VGYGKNFPQFVHHRGASIPAN 273
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 624,958,211
Number of Sequences: 392609
Number of extensions: 6705625
Number of successful extensions: 29933
Number of sequences better than 1.0e-020: 40
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 36815694948
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)