TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB894050.1|CB894050 EST646842 HOGA Medicago truncatula c... 112 6e-030
gb|BE942685.1|BE942685 EST422264 MGHG Medicago truncatula c... 112 6e-030
gb|CB892887.1|CB892887 EST645679 HOGA Medicago truncatula c... 118 1e-025
gb|AC139354.5| Medicago truncatula clone mth1-64n13, comple... 110 3e-023
gb|BI311930.1|BI311930 EST5313680 GESD Medicago truncatula ... 107 2e-022
gb|CB891385.1|CB891385 EST648354 KV3 Medicago truncatula cD... 107 2e-022
gb|CF068756.1|CF068756 EST669477 MTUS Medicago truncatula c... 107 2e-022
gb|BF633157.1|BF633157 NF054B11DT1F1093 Drought Medicago tr... 106 5e-022
gb|CA922246.1|CA922246 EST639964 MTUS Medicago truncatula c... 104 2e-021
gb|CA922247.1|CA922247 EST639965 MTUS Medicago truncatula c... 104 2e-021
gb|CB893899.1|CB893899 EST646691 HOGA Medicago truncatula c... 104 2e-021
gb|AW560244.1|AW560244 EST315292 DSIR Medicago truncatula c... 102 6e-021
gb|AW774385.1|AW774385 EST333536 KV3 Medicago truncatula cD... 102 6e-021
>gb|CB894050.1|CB894050 EST646842 HOGA Medicago truncatula cDNA clone HOGA-29J20, mRNA
sequence
Length = 782
Score = 112 bits (239), Expect(2) = 6e-030
Identities = 44/76 (57%), Positives = 55/76 (72%)
Frame = -2 / +2
Query: 513 CVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAI 334
C G +F++QSWCIS RGPLY MF PL TVIT + +A L+EEL++GSL+GA
Sbjct: 266 CSLYAGIGIAASFFIQSWCISGRGPLYCVMFNPLATVITALVSAIFLQEELYIGSLVGAF 445
Query: 333 AVIAGLYVVLWGKAGD 286
VI+GLY+VLWGKA D
Sbjct: 446 GVISGLYIVLWGKAKD 493
Score = 40.0 bits (81), Expect(2) = 6e-030
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2 / +2
Query: 615 WMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGV 496
WMC+ +T+QSA+ + W ++S ++SC +++G+
Sbjct: 167 WMCLFATIQSAIFALIKEGNLRVWTLNSPLQISCSLYAGI 286
>gb|BE942685.1|BE942685 EST422264 MGHG Medicago truncatula cDNA clone pMGHG-9K23, mRNA
sequence
Length = 558
Score = 112 bits (239), Expect(2) = 6e-030
Identities = 44/76 (57%), Positives = 55/76 (72%)
Frame = -2 / +3
Query: 513 CVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAI 334
C G +F++QSWCIS RGPLY MF PL TVIT + +A L+EEL++GSL+GA
Sbjct: 168 CSLYAGIGIAASFFIQSWCISRRGPLYCVMFNPLATVITALVSAIFLQEELYIGSLVGAF 347
Query: 333 AVIAGLYVVLWGKAGD 286
VI+GLY+VLWGKA D
Sbjct: 348 GVISGLYIVLWGKAKD 395
Score = 40.0 bits (81), Expect(2) = 6e-030
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2 / +3
Query: 615 WMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGV 496
WMC+ +T+QSA+ + W ++S ++SC +++G+
Sbjct: 69 WMCLFATIQSAIFALIKEGNLRVWTLNSPLQISCSLYAGI 188
>gb|CB892887.1|CB892887 EST645679 HOGA Medicago truncatula cDNA clone HOGA-26G9, mRNA
sequence
Length = 918
Score = 118 bits (252), Expect = 1e-025
Identities = 46/122 (37%), Positives = 72/122 (59%)
Frame = -2 / +2
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+AW+C++ ++ ++ D S W I L CV+SGV SG+ +Y+Q
Sbjct: 452 LSLTAWICLMGIIEGSIASLIFERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTR 631
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGG 271
RGP++ F PLC +IT + VL E++H+GS+ GAI ++ GLY V+WGK+ D +
Sbjct: 632 ERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAIIIVIGLYTVVWGKSKDRRESA 811
Query: 270 VE 265
E
Sbjct: 812 DE 817
>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
Length = 114031
Score = 110 bits (235), Expect = 3e-023
Identities = 41/123 (33%), Positives = 74/123 (60%)
Frame = -2 / -3
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCI 454
P +A+MC+L ++Q + SAW +H L+ + SGV +G++F + SW I
Sbjct: 29162 PYTSTAYMCILGSIQCVFIALCFDHSVSAWSLHDAMRLASSLHSGVICTGISFPIISWTI 28983
Query: 453 SVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKG 274
+GPLY ++F PL ++T + A ++E+L+VG+ +G++ ++ GLY LWGK+ + +
Sbjct: 28982 GRKGPLYVSVFTPLQLILTAFISWAFIQEKLYVGTAIGSLLIVGGLYAFLWGKSKEVDNN 28803
Query: 273 GVE 265
V+
Sbjct: 28802 KVD 28794
>gb|BI311930.1|BI311930 EST5313680 GESD Medicago truncatula cDNA clone pGESD15P10 5' end,
mRNA sequence
Length = 701
Score = 107 bits (228), Expect = 2e-022
Identities = 42/123 (34%), Positives = 74/123 (60%)
Frame = -2 / +3
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCI 454
P +A+MC L++ Q + S+W + L+ +++G+ +G+++ + SW I
Sbjct: 162 PYTSTAYMCFLASFQCVFIALCFDHRVSSWSLSDAMRLTSSLYAGIICTGLSYCIISWTI 341
Query: 453 SVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKG 274
+GPLY ++F PL +IT + A LRE+L+VG+ LG++ ++ GLY VLWGK+ + +
Sbjct: 342 ERKGPLYVSVFTPLQLIITAFISWAFLREKLYVGTALGSLLIVGGLYSVLWGKSKEVDNN 521
Query: 273 GVE 265
VE
Sbjct: 522 KVE 530
>gb|CB891385.1|CB891385 EST648354 KV3 Medicago truncatula cDNA clone KV3-50E15, mRNA
sequence
Length = 724
Score = 107 bits (228), Expect = 2e-022
Identities = 39/112 (34%), Positives = 70/112 (62%)
Frame = -2 / -1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++++ C +Q ++ L D AW S E+ +++GV SG+ F +Q WCI
Sbjct: 655 LSVTSYTCFFGLIQFLIIALILERDAQAWIFQSGGEVFTILYAGVVASGIAFAVQIWCID 476
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGK 295
GP++ A+++P+ T++ + A+ L EE ++G ++GA+ +I GLY+VLWGK
Sbjct: 475 RGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIIVGLYLVLWGK 320
>gb|CF068756.1|CF068756 EST669477 MTUS Medicago truncatula cDNA clone MTUS-12A11, mRNA
sequence
Length = 821
Score = 107 bits (228), Expect = 2e-022
Identities = 42/123 (34%), Positives = 74/123 (60%)
Frame = -2 / +1
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCI 454
P +A+MC L++ Q + S+W + L+ +++G+ +G+++ + SW I
Sbjct: 169 PYTSTAYMCFLASFQCVFIALCFDHRVSSWSLSDAMRLTSSLYAGIICTGLSYCIISWTI 348
Query: 453 SVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKG 274
+GPLY ++F PL +IT + A LRE+L+VG+ LG++ ++ GLY VLWGK+ + +
Sbjct: 349 ERKGPLYVSVFTPLQLIITAFISWAFLREKLYVGTALGSLLIVGGLYSVLWGKSKEVDNN 528
Query: 273 GVE 265
VE
Sbjct: 529 KVE 537
>gb|BF633157.1|BF633157 NF054B11DT1F1093 Drought Medicago truncatula cDNA clone NF054B11DT
5', mRNA sequence
Length = 688
Score = 106 bits (226), Expect = 5e-022
Identities = 41/116 (35%), Positives = 71/116 (61%)
Frame = -2 / -1
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+A +C L TLQS + + +P+AW I L ++G+ SG+T+Y+Q
Sbjct: 601 SAQLSLTAIVCSLGTLQSIAVTFVMEHNPNAWSIGWDMNLLAAAYAGIISSGLTYYVQGI 422
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKA 292
+ +GP++ F PL +I + +L E+L++G ++GAI ++ GLY VLWGK+
Sbjct: 421 VMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGVIGAILIVIGLYSVLWGKS 254
>gb|CA922246.1|CA922246 EST639964 MTUS Medicago truncatula cDNA clone MTUS-51C5, mRNA
sequence
Length = 634
Score = 104 bits (222), Expect = 2e-021
Identities = 41/104 (39%), Positives = 62/104 (59%)
Frame = -2 / -1
Query: 576 VSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVIT 397
++++ D S W I L CV+SGV SG+ +Y+Q RGP++ F PLC +IT
Sbjct: 622 ITYIERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIIT 443
Query: 396 TVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVE 265
+ VL E++H+GS+ GAI ++ GLY V+WGK+ D + E
Sbjct: 442 AALGSLVLAEQVHLGSIFGAIIIVIGLYTVVWGKSKDRRESADE 311
>gb|CA922247.1|CA922247 EST639965 MTUS Medicago truncatula cDNA clone MTUS-51C6, mRNA
sequence
Length = 704
Score = 104 bits (222), Expect = 2e-021
Identities = 41/104 (39%), Positives = 62/104 (59%)
Frame = -2 / -2
Query: 576 VSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVIT 397
++++ D S W I L CV+SGV SG+ +Y+Q RGP++ F PLC +IT
Sbjct: 622 ITYIERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIIT 443
Query: 396 TVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVE 265
+ VL E++H+GS+ GAI ++ GLY V+WGK+ D + E
Sbjct: 442 AALGSLVLAEQVHLGSIFGAIIIVIGLYTVVWGKSKDRRESADE 311
>gb|CB893899.1|CB893899 EST646691 HOGA Medicago truncatula cDNA clone HOGA-29I24, mRNA
sequence
Length = 740
Score = 104 bits (221), Expect = 2e-021
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L AWMC ++TLQSAL+ FL PD + W+I SL + +++GV GS V + LQ+WCIS
Sbjct: 522 LSLCAWMCFMATLQSALVTLFLEPDFNGWKIKSLLQFGSALYAGVMGSAVIYCLQAWCIS 701
Query: 450 VRGPLYSAMFKPL 412
RGPL+SAMF P+
Sbjct: 702 RRGPLFSAMFTPV 740
>gb|AW560244.1|AW560244 EST315292 DSIR Medicago truncatula cDNA clone pDSIR-26F7, mRNA
sequence
Length = 637
Score = 102 bits (218), Expect = 6e-021
Identities = 43/134 (32%), Positives = 69/134 (51%)
Frame = -2 / -1
Query: 558 DPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAA 379
D S W I L CV+SG+ SG+ +Y+Q RGP++ F PLC +IT +
Sbjct: 625 DFSVWAIGFDSRLLACVYSGIVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSI 446
Query: 378 VLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVEPEHHSADLEKXSSARSDPNSTA 199
VL E+ H+GS++GAI ++ GLY V+WGK+ D+ P+ +L R+ +
Sbjct: 445 VLAEQTHLGSIIGAIIIVCGLYTVVWGKSKDSVNTIDAPKSEGQELPIKDGTRTGSDIFE 266
Query: 198 GVGSGIAEPLLAGG 157
+ + + + G
Sbjct: 265 SIEVNVPKDMKVAG 224
>gb|AW774385.1|AW774385 EST333536 KV3 Medicago truncatula cDNA clone pKV3-22K22, mRNA
sequence
Length = 622
Score = 102 bits (218), Expect = 6e-021
Identities = 40/106 (37%), Positives = 63/106 (59%)
Frame = -2 / +2
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+AW+C++ ++ ++ D S W I L CV+SGV SG+ +Y+Q
Sbjct: 302 LSLTAWICLMGIIEGSIASLIFERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTR 481
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLY 313
RGP++ F PLC +IT + VL E++H+GS+ GAI ++ GLY
Sbjct: 482 ERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAIIIVIGLY 619
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 600,151,024
Number of Sequences: 392609
Number of extensions: 7002230
Number of successful extensions: 36689
Number of sequences better than 1.0e-020: 13
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 26217036560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)