TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ148856.1|BQ148856 NF083B11FL1F1092 Developing flower M... 175 7e-043
gb|CA920629.1|CA920629 EST638347 MTUS Medicago truncatula c... 163 2e-039
gb|AJ499253.1|AJ499253 AJ499253 MTGIM Medicago truncatula c... 147 1e-034
>gb|BQ148856.1|BQ148856 NF083B11FL1F1092 Developing flower Medicago truncatula cDNA clone
NF083B11FL 5', mRNA sequence
Length = 669
Score = 175 bits (376), Expect = 7e-043
Identities = 71/97 (73%), Positives = 74/97 (76%)
Frame = -2 / +2
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPVFTDPKLKWYEP S LLG EYFLHAYGPIY LRNNSFRMFS
Sbjct: 377 IGCMKKGPVFTDPKLKWYEPLSNLLGKEYFLHAYGPIYALSADVXSSLVALRNNSFRMFS 556
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWD 329
DVTIG+WMLAMNVNHEN H LC CT +S+A WD
Sbjct: 557 NEDVTIGAWMLAMNVNHENIHELCSXXCTSTSIAGWD 667
Score = 117 bits (250), Expect = 2e-025
Identities = 55/98 (56%), Positives = 62/98 (63%)
Frame = +3 / -1
Query: 327 MSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIRXXXXXXXXXXXXXXXXXX 506
+SQ A + V QS+ +FSWLTFIASI P+VTS +LNIR
Sbjct: 669 ISQPAIDVDVHXXEQSS*IFSWLTFIASIQAPMVTSSLLNIRKLLFLRATKLDXTSAERA 490
Query: 507 XIGPYA*RKYSDPSKKDWGSYHFNLGSVKTGPFFMHPM 620
IGP A*RKYS PSK D GSYH + GSVKTGPFFMHPM
Sbjct: 489 YIGP*A*RKYSFPSKLDNGSYHLSFGSVKTGPFFMHPM 376
>gb|CA920629.1|CA920629 EST638347 MTUS Medicago truncatula cDNA clone MTUS-30E1, mRNA
sequence
Length = 748
Score = 163 bits (351), Expect = 2e-039
Identities = 66/106 (62%), Positives = 77/106 (72%)
Frame = -2 / -2
Query: 550 LLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFSI*DVTIGSWMLAMNVNHENTHAL 371
LL EYFLHAY PIY LRN+SFRMFS DVTIG+WMLAMNV HEN L
Sbjct: 708 LLEREYFLHAYVPIYALSADVVQSLVFLRNDSFRMFSNEDVTIGAWMLAMNVKHENNLEL 529
Query: 370 CEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKECTGGPTVAAE 233
C DCT +S+AVWDIPKCSGLC+PE KMLELHQ++ C+ PT+ ++
Sbjct: 528 CASDCTATSIAVWDIPKCSGLCNPEKKMLELHQKESCSQSPTLESD 391
>gb|AJ499253.1|AJ499253 AJ499253 MTGIM Medicago truncatula cDNA clone mtgmacc120001h06,
mRNA sequence
Length = 473
Score = 147 bits (316), Expect = 1e-034
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = -2 / -3
Query: 466 RNNSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKM 287
RNNSFRMFS DVTIG+WMLAMNVNHEN H LC P+CT +S+AVWDIPKCSGLC+PE +M
Sbjct: 468 RNNSFRMFSNEDVTIGAWMLAMNVNHENIHELCSPECTSTSIAVWDIPKCSGLCNPEKRM 289
Query: 286 LELHQRKECTGGPTVAAE 233
LELHQ C PT+ ++
Sbjct: 288 LELHQMDSCIQSPTMESD 235
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 663,012,173
Number of Sequences: 392609
Number of extensions: 9095140
Number of successful extensions: 49177
Number of sequences better than 1.0e-020: 4
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19158603640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)