TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG949491.1|CG949491 MBELT86TR mth2 Medicago truncatula g... 119 3e-026
gb|AW171705.2|AW171705 N100599e rootphos(-) Medicago trunca... 119 3e-026
gb|BE323374.2|BE323374 NF006F12PL1F1095 Phosphate starved l... 119 3e-026
gb|CX522613.1|CX522613 s13dNF89B06VI057_471030 Virus-Infect... 119 3e-026
gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKIN... 119 3e-026
gb|CA917146.1|CA917146 EST641293 GPOD Medicago truncatula c... 116 4e-025
gb|CG934497.1|CG934497 MBELQ45TR mth2 Medicago truncatula g... 110 2e-023
gb|BE239910.1|BE239910 EST403959 MHRP- Medicago truncatula ... 110 2e-023
gb|BI310364.1|BI310364 EST5312114 GESD Medicago truncatula ... 109 3e-023
>gb|CG949491.1|CG949491 MBELT86TR mth2 Medicago truncatula genomic clone 82P4, DNA sequence
Length = 776
Score = 119 bits (255), Expect = 3e-026
Identities = 55/100 (55%), Positives = 69/100 (69%)
Frame = +3 / -1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 746 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 567
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAA 326
+TATIAVLGQF D + +A FLQ + S * + + A
Sbjct: 566 STATIAVLGQFSTDLTTRASFLQGIPSPTSSDQ*FLFELA 447
>gb|AW171705.2|AW171705 N100599e rootphos(-) Medicago truncatula cDNA clone MHRP-9A3, mRNA
sequence
Length = 553
Score = 119 bits (255), Expect = 3e-026
Identities = 55/100 (55%), Positives = 69/100 (69%)
Frame = +3 / +2
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 233 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 412
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAA 326
+TATIAVLGQF D + +A FLQ + S * + + A
Sbjct: 413 STATIAVLGQFSTDLTTRASFLQGIPSPTSSDQ*FLFELA 532
>gb|BE323374.2|BE323374 NF006F12PL1F1095 Phosphate starved leaf Medicago truncatula cDNA
clone NF006F12PL 5', mRNA sequence
Length = 394
Score = 119 bits (255), Expect = 3e-026
Identities = 55/100 (55%), Positives = 69/100 (69%)
Frame = +3 / +2
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 92 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 271
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAA 326
+TATIAVLGQF D + +A FLQ + S * + + A
Sbjct: 272 STATIAVLGQFSTDLTTRASFLQGIPSPTSSDQ*FLFELA 391
>gb|CX522613.1|CX522613 s13dNF89B06VI057_471030 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 511
Score = 119 bits (255), Expect = 3e-026
Identities = 55/100 (55%), Positives = 69/100 (69%)
Frame = +3 / +3
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 150 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 329
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAA 326
+TATIAVLGQF D + +A FLQ + S * + + A
Sbjct: 330 STATIAVLGQFSTDLTTRASFLQGIPSPTSSDQ*FLFELA 449
>gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 114521
Score = 119 bits (255), Expect = 3e-026
Identities = 55/100 (55%), Positives = 69/100 (69%)
Frame = +3 / -1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 5834 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 5655
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IVSQAA 326
+TATIAVLGQF D + +A FLQ + S * + + A
Sbjct: 5654 STATIAVLGQFSTDLTTRASFLQGIPSPTSSDQ*FLFELA 5535
>gb|CA917146.1|CA917146 EST641293 GPOD Medicago truncatula cDNA clone GPOD-35C22, mRNA
sequence
Length = 776
Score = 116 bits (247), Expect = 4e-025
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = +3 / +2
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+T+QIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 437 IGKSLLQSIVHFYGFKLQVQERLTKQIAETISPLLGGNVIVVVEASHTCMISRGIEKFGS 616
Query: 207 NTATIAVLGQFLADPSAKACFLQNVLDSVGSAV*IV 314
+TATIAVLG F D +++ FLQ++ ++ S I+
Sbjct: 617 STATIAVLGCFSTDIASRILFLQSIANATSSGKVII 724
>gb|CG934497.1|CG934497 MBELQ45TR mth2 Medicago truncatula genomic clone 82G17, DNA
sequence
Length = 921
Score = 110 bits (235), Expect = 2e-023
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +3 / +3
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+T+QIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 633 IGKSILQSIVHFYGFKLQVQERLTKQIAETISPLVGGNVIVVVEASHTCMISRGIEKFGS 812
Query: 207 NTATIAVLGQFLADPSAKACF 269
NTATIAVLG F + +A+ F
Sbjct: 813 NTATIAVLGHFSTNLAARTSF 875
>gb|BE239910.1|BE239910 EST403959 MHRP- Medicago truncatula cDNA clone pMHRP-41A19, mRNA
sequence
Length = 336
Score = 110 bits (234), Expect = 2e-023
Identities = 48/80 (60%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 36 SHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTA 215
S Q++VHFYG KLQVQER+T+QIAE + + +VVVEA+H CMISRGIEK SNTA
Sbjct: 67 SILQSIVHFYGFKLQVQERLTKQIAETISPLVGGNVIVVVEASHTCMISRGIEKFGSNTA 246
Query: 216 TIAVLGQFLADPSAKACFLQ 275
TIAVLG F + +A+ FL+
Sbjct: 247 TIAVLGHFSTNLAARTKFLE 306
>gb|BI310364.1|BI310364 EST5312114 GESD Medicago truncatula cDNA clone pGESD7J14 5' end,
mRNA sequence
Length = 672
Score = 109 bits (233), Expect = 3e-023
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +3 / +3
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
I +S Q++VHFYG KLQVQER+TRQIAE + + +VVVEA+H CMISRGIEK S
Sbjct: 438 IGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGS 617
Query: 207 NTATIAVLGQFLAD 248
+TATIAVLGQF D
Sbjct: 618 STATIAVLGQFSTD 659
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 611,791,647
Number of Sequences: 392609
Number of extensions: 8730818
Number of successful extensions: 69458
Number of sequences better than 1.0e-020: 10
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 16183814912
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)