TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG455193.1|BG455193 NF100G04PL1F1034 Phosphate starved l... 51 2e-024
>gb|BG455193.1|BG455193 NF100G04PL1F1034 Phosphate starved leaf Medicago truncatula cDNA
clone NF100G04PL 5', mRNA sequence
Length = 654
Score = 50.6 bits (104), Expect(4) = 2e-024
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA GE +LR G I + +RR C Y K
Sbjct: 206 HFDLSGAAFGHMAVHGENGQLRNRGEIQVLYRRTTCVYAGK 328
Score = 41.8 bits (85), Expect(4) = 2e-024
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3 / +2
Query: 312 IFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
++K G GCG C+++KC CS + V V ITD
Sbjct: 77 LYKKGEGCGECYKVKCLDHTICSKRAVTVIITD 175
Score = 39.6 bits (80), Expect(4) = 2e-024
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ F + +G P +L+LLV++ +E GS + + H WGA W
Sbjct: 332 IAFQVNEGSTPFWLSLLVEFEDGDGDISSMHIQEAGSSEWLQMNHLWGANW 484
Score = 37.7 bits (76), Expect(4) = 2e-024
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3 / +2
Query: 732 PLKGPLTVRLTTEGGTKSVYDDVIPANWKA 821
PL+GP +V+L+T G DVIP++W +
Sbjct: 500 PLRGPFSVKLSTSTGKSLTAKDVIPSHWSS 589
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,126,590,643
Number of Sequences: 392609
Number of extensions: 13748908
Number of successful extensions: 60036
Number of sequences better than 1.0e-020: 2
length of database: 147,244,331
effective HSP length: 56
effective length of database: 125,258,227
effective search space used: 46220285763
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)