TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.1
(656 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORK... 53 4e-022
gb|AC122726.21| Medicago truncatula clone mth2-23o24, compl... 53 4e-022
gb|AC137994.19| Medicago truncatula clone mth2-23f15, compl... 51 9e-021
>gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 132037
Score = 52.8 bits (109), Expect(3) = 4e-022
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3 / -2
Query: 591 VIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 490
V + YA E VWK W W +E+DL MNGA F SG
Sbjct: 82581 VTKRDYAPESVWKAWSWRSENDLMMNGAFFKQSG 82480
Score = 48.3 bits (99), Expect(3) = 4e-022
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -3 / -2
Query: 456 VKPKPGTYVTRLTRFSGPLSCCTGKPC*RP 367
+K KPG++ LTRFSG L C GKPC* P
Sbjct: 82449 IKAKPGSFAAALTRFSGCLKCEVGKPC*EP 82360
Score = 41.8 bits (85), Expect(3) = 4e-022
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTI+SQGNRFIAPPN AK + K
Sbjct: 82732 PTILSQGNRFIAPPNPNAKEVYK 82664
>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
Length = 130999
Score = 52.8 bits (109), Expect(3) = 4e-022
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3 / +1
Query: 591 VIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 490
V + YA E VWK W W +E+DL MNGA F SG
Sbjct: 9883 VTKRDYAPESVWKAWSWRSENDLMMNGAFFKQSG 9984
Score = 48.3 bits (99), Expect(3) = 4e-022
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -3 / +1
Query: 456 VKPKPGTYVTRLTRFSGPLSCCTGKPC*RP 367
+K KPG++ LTRFSG L C GKPC* P
Sbjct: 10015 IKAKPGSFAAALTRFSGCLKCEVGKPC*EP 10104
Score = 41.8 bits (85), Expect(3) = 4e-022
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / +3
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTI+SQGNRFIAPPN AK + K
Sbjct: 9732 PTILSQGNRFIAPPNPNAKEVYK 9800
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
Length = 131563
Score = 51.0 bits (105), Expect(3) = 9e-021
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = -3 / +1
Query: 606 NIAAKVIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGAPKQVDTNEWVKPKP 442
N A + + YA E VW W W +E D FMNGA F SG K + + KP
Sbjct: 99388 NAAKTITHRDYAPEAVWSKWQWRSEGDHFMNGANFIQSGPPIKSLPFKKGFLMKP 99552
Score = 44.6 bits (91), Expect(3) = 9e-021
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -3 / +1
Query: 456 VKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+KP+ G+ RLTRFSG L+C G+PC*
Sbjct: 99544 MKPRHGSQANRLTRFSGALNCVVGRPC* 99627
Score = 42.8 bits (87), Expect(3) = 9e-021
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 651 APTIISQGNRFIAPPNIAAKVI 586
APTI+SQGNRFIAP N AAK I
Sbjct: 99340 APTILSQGNRFIAPHNNAAKTI 99405
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 638,239,074
Number of Sequences: 392609
Number of extensions: 9153525
Number of successful extensions: 49475
Number of sequences better than 1.0e-020: 4
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20671124980
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)