TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115184.2.1
         (642 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB892670.1|CB892670  EST645462 HOGA Medicago truncatula c...    78   2e-023
gb|BG452808.1|BG452808  NF081A01LF1F1001 Developing leaf Med...    78   2e-023

>gb|CB892670.1|CB892670 EST645462 HOGA Medicago truncatula cDNA clone HOGA-19M10, mRNA
           sequence
          Length = 786

 Score = 78.0 bits (164), Expect(2) = 2e-023
 Identities = 26/74 (35%), Positives = 54/74 (72%)
 Frame = +3 / +1

                                                                       
Query: 162 YQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANN 341
           +Q+V ++NVS PI+IDQ YC +    ++ +S + +++++++N+ GT+N+ +AI  +C++ 
Sbjct: 223 FQNVRVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDT 402

                         
Query: 342 LPCQGVQLINVDIK 383
           +PC  + L NVD++
Sbjct: 403 VPCSNLVLSNVDLE 444




 Score = 51.9 bits (107), Expect(2) = 2e-023
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +3 / +1

                                                               
Query: 3   GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKF 158
           GHGIS+GSLG+      V  V +    L GTTNGLRIK+++     +K  +F
Sbjct: 70  GHGISIGSLGKDNSTGVVTKVILDTAFLKGTTNGLRIKTWQGGAGYVKGVRF 225



>gb|BG452808.1|BG452808 NF081A01LF1F1001 Developing leaf Medicago truncatula cDNA clone
           NF081A01LF 5', mRNA sequence
          Length = 583

 Score = 78.0 bits (164), Expect(2) = 2e-023
 Identities = 26/74 (35%), Positives = 54/74 (72%)
 Frame = +3 / +2

                                                                       
Query: 162 YQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANN 341
           +Q+V ++NVS PI+IDQ YC +    ++ +S + +++++++N+ GT+N+ +AI  +C++ 
Sbjct: 299 FQNVRVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDT 478

                         
Query: 342 LPCQGVQLINVDIK 383
           +PC  + L NVD++
Sbjct: 479 VPCSNLVLSNVDLE 520




 Score = 51.9 bits (107), Expect(2) = 2e-023
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +3 / +2

                                                               
Query: 3   GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKF 158
           GHGIS+GSLG+      V  V +    L GTTNGLRIK+++     +K  +F
Sbjct: 146 GHGISIGSLGKDNSTGVVTKVILDTAFLKGTTNGLRIKTWQGGAGYVKGVRF 301



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 377,278,174
Number of Sequences: 392609
Number of extensions: 3653512
Number of successful extensions: 25297
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20040907755
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)