TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC153001.7| Medicago truncatula clone mth2-95k24, comple... 106 4e-045
gb|AC124961.19| Medicago truncatula clone mth2-18l7, comple... 106 5e-045
gb|AC155892.1| Medicago truncatula chromosome 7 clone mth2-... 106 8e-045
gb|CA990640.1|CA990640 EST644148 GESD Medicago truncatula c... 122 3e-042
emb|CR931743.1| Medicago truncatula chromosome 5 clone mth2... 83 3e-036
emb|CR931740.2| Medicago truncatula chromosome 5 clone mth2... 92 4e-036
gb|AC152919.12| Medicago truncatula clone mth2-21g11, WORKI... 93 8e-033
gb|BE317744.2|BE317744 NF054H06LF1F1048 Developing leaf Med... 138 1e-031
gb|AC124967.25| Medicago truncatula clone mth2-13h21, WORKI... 89 2e-031
gb|CF069729.1|CF069729 EST670450 MTUS Medicago truncatula c... 122 2e-029
emb|CR305519.1| mte1-25A2FM1 BAC end, cultivar Jemalong A17... 93 5e-029
gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone m... 100 6e-028
gb|CG921542.1|CG921542 MBECJ20TF mth2 Medicago truncatula g... 91 7e-028
gb|CX531280.1|CX531280 s13dNF24F12MJ096_248677 Methyl Jasmo... 74 2e-027
gb|DW016825.1|DW016825 EST1225786 MTY Medicago truncatula c... 79 2e-025
gb|AC151461.16| Medicago truncatula clone mth2-39h15, WORKI... 95 5e-025
gb|DW017116.1|DW017116 EST1226077 MTY Medicago truncatula c... 102 2e-023
gb|BG583143.1|BG583143 EST484893 GVN Medicago truncatula cD... 74 5e-023
gb|AC158376.1| Medicago truncatula chromosome 2 clone mth2-... 74 6e-022
emb|CT009568.8| M.truncatula DNA sequence from clone MTH2-9... 74 6e-022
gb|AC130803.31| Medicago truncatula clone mth2-10g3, WORKIN... 82 8e-021
>gb|AC153001.7| Medicago truncatula clone mth2-95k24, complete sequence
Length = 100724
Score = 106 bits (226), Expect(4) = 4e-045
Identities = 42/61 (68%), Positives = 46/61 (75%)
Frame = +1 / -2
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G+K QAVAVR+ G KT YNCT G QDTLYDHKGLHYF C I+GSVDFI G G+S Y
Sbjct: 29092 GSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLY 28913
Query: 757 E 759
E
Sbjct: 28912 E 28910
Score = 64.8 bits (135), Expect(4) = 4e-045
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +1 / -2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
FREK+ + + PFITF D + P + NDT + G DG + T SAT+AV + YF A
Sbjct: 29455 FREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAI 29276
Query: 538 GVVF 549
+ F
Sbjct: 29275 NINF 29264
Score = 56.1 bits (116), Expect(4) = 4e-045
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1 / -1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAK 1002
G YLGR WG+ S+VV+SYT M V+P GW+ W K
Sbjct: 28586 GPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTK 28473
Score = 40.5 bits (82), Expect(4) = 4e-045
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1 / -2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPP 1167
G + RV WA L + +A+ F+GT Y+ G+TW+ P
Sbjct: 28174 GPGSNTAGRVPWARMLNDKEAQVFIGTQYIDGNTWLISP 28058
>gb|AC124961.19| Medicago truncatula clone mth2-18l7, complete sequence
Length = 106560
Score = 106 bits (226), Expect(4) = 5e-045
Identities = 42/61 (68%), Positives = 46/61 (75%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G+K QAVAVR+ G KT YNCT G QDTLYDHKGLHYF C I+GSVDFI G G+S Y
Sbjct: 73383 GSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLY 73562
Query: 757 E 759
E
Sbjct: 73563 E 73565
Score = 64.8 bits (135), Expect(4) = 5e-045
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
FREK+ + + PFITF D + P + NDT + G DG + T SAT+AV + YF A
Sbjct: 73020 FREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAI 73199
Query: 538 GVVF 549
+ F
Sbjct: 73200 NINF 73211
Score = 56.1 bits (116), Expect(4) = 5e-045
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAK 1002
G YLGR WG+ S+VV+SYT M V+P GW+ W K
Sbjct: 73889 GPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTK 74002
Score = 40.5 bits (82), Expect(4) = 5e-045
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPP 1167
G + RV WA L + +A+ F+GT Y+ G+TW+ P
Sbjct: 74301 GPGSNTAGRVPWARMLNDKEAQVFIGTQYIDGNTWLISP 74417
>gb|AC155892.1| Medicago truncatula chromosome 7 clone mth2-52p13, *** SEQUENCING IN
PROGRESS ***, 7 unordered pieces
Length = 126906
Score = 106 bits (226), Expect(4) = 8e-045
Identities = 42/61 (68%), Positives = 46/61 (75%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G+K QAVAVR+ G KT YNCT G QDTLYDHKGLHYF C I+GSVDFI G G+S Y
Sbjct: 6723 GSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLY 6902
Query: 757 E 759
E
Sbjct: 6903 E 6905
Score = 64.8 bits (135), Expect(4) = 8e-045
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
FREK+ + + PFITF D + P + NDT + G DG + T SAT+AV + YF A
Sbjct: 6360 FREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAI 6539
Query: 538 GVVF 549
+ F
Sbjct: 6540 NINF 6551
Score = 56.1 bits (116), Expect(4) = 8e-045
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1 / +2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAK 1002
G YLGR WG+ S+VV+SYT M V+P GW+ W K
Sbjct: 7229 GPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTK 7342
Score = 40.5 bits (82), Expect(4) = 8e-045
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQPP 1167
G + RV WA L + +A+ F+GT Y+ G+TW+ P
Sbjct: 7641 GPGSNTAGRVPWARMLNDKEAQVFIGTQYIDGNTWLISP 7757
>gb|CA990640.1|CA990640 EST644148 GESD Medicago truncatula cDNA clone GESD-29I20, mRNA
sequence
Length = 647
Score = 122 bits (261), Expect(3) = 3e-042
Identities = 49/81 (60%), Positives = 56/81 (69%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G+K QAVAVR+ G KT YNCT G QDTLYDHKGLHYF C I+GSVDFI G G+S Y
Sbjct: 321 GSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLY 500
Query: 757 EDCRIESVVKEVAVLTAQQRS 819
E C I S+ + +TAQ S
Sbjct: 501 EGCTIRSIANNMTSITAQSGS 563
Score = 67.5 bits (141), Expect(3) = 3e-042
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
+REK+ + + PFITF D + P + NDT + G DG + T SAT+AV + YF A
Sbjct: 105 YREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAI 284
Query: 538 GVVFRNDA 561
+ F N A
Sbjct: 285 NINFENTA 308
Score = 22.6 bits (43), Expect(3) = 3e-042
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGG 879
D+GFSFKN + G
Sbjct: 576 DSGFSFKNSMVIG 614
>emb|CR931743.1| Medicago truncatula chromosome 5 clone mth2-4c23, COMPLETE SEQUENCE
Length = 109311
Score = 83.1 bits (175), Expect(5) = 3e-036
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +1 / -1
Query: 565 LAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFG 744
+A PG +G QAVA+R+ + Y I G QDTL D+ G HYF CLI+G VDFIFG
Sbjct: 18549 VASPGGRGMQAVALRVDSDRAMFYKVKIKGTQDTLLDNTGTHYFYKCLIQGKVDFIFGNA 18370
Query: 745 RSFYE 759
+S YE
Sbjct: 18369 KSLYE 18355
Score = 57.4 bits (119), Expect(5) = 3e-036
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / -1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G++YLGRAWGD SRV+YS M + + P GW W
Sbjct: 18141 GKVYLGRAWGDYSRVIYSNCHMDDIITPEGWSSW 18040
Score = 49.6 bits (102), Expect(5) = 3e-036
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1 / -1
Query: 430 VVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVF 549
V+ WN ++ G +G+ +GT GSAT+AVES++F A + F
Sbjct: 18903 VITWNSKSSDRGPNGQELGTYGSATVAVESNFFCATEITF 18784
Score = 38.6 bits (78), Expect(5) = 3e-036
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1 / -1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A KKRV W+ + +AKPF+ +++ G+ W++
Sbjct: 17760 GIGANIKKRVPWSKQFSYGEAKPFLDINFINGNQWLR 17650
Score = 34.1 bits (68), Expect(5) = 3e-036
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1 / -1
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD +GKGD + A++ +P N +RV + + PG
Sbjct: 19338 VVDRNGKGDSKTVQGAVDLVPNGNKQRVKIYIFPG 19234
>emb|CR931740.2| Medicago truncatula chromosome 5 clone mth2-67g10, COMPLETE SEQUENCE
Length = 153273
Score = 91.8 bits (194), Expect(5) = 4e-036
Identities = 39/73 (53%), Positives = 44/73 (60%)
Frame = +1 / +1
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
V +N AP PG +G QAVA R+ G K C G QDTL D G HYFK C I GS
Sbjct: 134980 VSMQNTAPAPMPGMQGLQAVAFRISGDKAYFSGCGFHGAQDTLCDDAGRHYFKECYIEGS 135159
Query: 721 VDFIFGFGRSFYE 759
+DFIFG GRS Y+
Sbjct: 135160 IDFIFGNGRSMYK 135198
Score = 59.3 bits (123), Expect(5) = 4e-036
Identities = 21/64 (32%), Positives = 43/64 (67%)
Frame = +1 / +2
Query: 361 REKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYG 540
REK+ + ++KP+ITF+ + ++ V+ W+D A G +G+ + T +A++ V ++YF+A
Sbjct: 134381 REKVVVPVTKPYITFQGEGREVTVIEWHDRACDPGPNGQQLRTYRTASVTVFANYFSAKN 134560
Query: 541 VVFR 552
+ F+
Sbjct: 134561 ITFK 134572
Score = 50.1 bits (103), Expect(5) = 4e-036
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEF 1035
G +Y+GRA G SR+VY+YT + V GWD W ++ +Y F
Sbjct: 135853 GPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWDHTNNKNK*TFYPSF 135999
Score = 32.7 bits (65), Expect(5) = 4e-036
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQP 1164
G A+ + V WA +L A PF+ +V G WI P
Sbjct: 136110 GPGAEAVRGVSWARELDFETAHPFIRKSFVNGRHWIAP 136223
Score = 30.4 bits (60), Expect(5) = 4e-036
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGADA 1062
+++G +KC+GPGA+A
Sbjct: 136083 VFFGVYKCWGPGAEA 136127
>gb|AC152919.12| Medicago truncatula clone mth2-21g11, WORKING DRAFT SEQUENCE, 13
unordered pieces
Length = 167594
Score = 92.7 bits (196), Expect(5) = 8e-033
Identities = 38/73 (52%), Positives = 44/73 (60%)
Frame = +1 / -2
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
V +N AP+ KPGA G Q VA+R+ C G QDTLYDH G HY+K C I GS
Sbjct: 53986 VCIQNTAPIPKPGAVGKQGVALRISADTAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGS 53807
Query: 721 VDFIFGFGRSFYE 759
VDFIFG S +E
Sbjct: 53806 VDFIFGNALSLFE 53768
Score = 55.6 bits (115), Expect(5) = 8e-033
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / -2
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 53575 GALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNW 53474
Score = 43.2 bits (88), Expect(5) = 8e-033
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1 / -2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWI 1158
G A RV W+ +LT+ +AKPF+ +YV G WI
Sbjct: 52780 GPGASYAGRVAWSRELTDEEAKPFISLNYVDGSEWI 52673
Score = 31.8 bits (63), Expect(5) = 8e-033
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1 / -2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGK 477
+REK+ + K FIT + +V W DTA T K
Sbjct: 54259 YREKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGAK 54140
Score = 29.9 bits (59), Expect(5) = 8e-033
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 1018 IYYGEFKCFGPGA 1056
++YG++KC GPGA
Sbjct: 52807 VFYGQYKCTGPGA 52769
>gb|BE317744.2|BE317744 NF054H06LF1F1048 Developing leaf Medicago truncatula cDNA clone
NF054H06LF 5', mRNA sequence
Length = 345
Score = 138 bits (297), Expect = 1e-031
Identities = 59/109 (54%), Positives = 65/109 (59%)
Frame = +1 / +2
Query: 412 DPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGG 591
D +V W DTAAT G G P+GT GSAT AV S YF A + F+N PL PGA G
Sbjct: 2 DGADTTIVQWGDTAATPGPRGNPLGTYGSATFAVNSPYFIAKNITFKNTFPLPAPGAIGK 181
Query: 592 QAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFG 738
QAVA R+ C G QDTLYDH G HY+K C I GSVDFIFG
Sbjct: 182 QAVAFRISADTASFLGCRFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFG 328
>gb|AC124967.25| Medicago truncatula clone mth2-13h21, WORKING DRAFT SEQUENCE, 6 ordered
pieces
Length = 134590
Score = 88.6 bits (187), Expect(5) = 2e-031
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +1 / -1
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
V +N +P+ + GGQA+A+R+ G K YNC G QDTL D G H+FK C I+G+
Sbjct: 16606 VYVQNSSPMPDENSVGGQALAMRISGDKAAFYNCKFIGFQDTLCDDYGKHFFKDCFIQGT 16427
Query: 721 VDFIFGFGRSFY 756
DFIFG G+S Y
Sbjct: 16426 YDFIFGNGKSIY 16391
Score = 54.7 bits (113), Expect(5) = 2e-031
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +1 / -2
Query: 841 DTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGW 981
DTGF+F +C+I G YLGR W S RVV++YT M V GW
Sbjct: 16230 DTGFTFVHCNITGSGHRNTYLGRGWRRSPRVVFAYTYMDSVVNSRGW 16090
Score = 37.7 bits (76), Expect(5) = 2e-031
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1 / -2
Query: 1075 RVGWALDLTEAQAKPFVGTHYVLGDTWIQPPPK 1173
R+ + L++ +AK F+ Y+ G+ W++PPPK
Sbjct: 15927 RLNYKRILSDEEAKHFLSMAYIHGEQWVRPPPK 15829
Score = 34.1 bits (68), Expect(5) = 2e-031
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1 / -3
Query: 484 GTVGSATLAVESDYFTAYGVVF 549
GT+ SAT+AV++DYF A V F
Sbjct: 16940 GTLDSATVAVDADYFVAVNVAF 16875
Score = 32.2 bits (64), Expect(5) = 2e-031
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1 / -2
Query: 1018 IYYGEFKCFGPGADAKKKKRV 1080
I++GE+KC GPGA KR+
Sbjct: 15969 IFFGEYKCSGPGAVRLNYKRI 15907
>gb|CF069729.1|CF069729 EST670450 MTUS Medicago truncatula cDNA clone MTUS-23F6, mRNA
sequence
Length = 791
Score = 122 bits (261), Expect(2) = 2e-029
Identities = 51/99 (51%), Positives = 60/99 (60%)
Frame = +1 / +1
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNC 642
G G+ +GT GSAT AV S YF A + F+N AP+ KPGA G Q VA+R+ C
Sbjct: 472 GAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPKPGAVGKQGVALRISADTAMFLGC 651
Query: 643 TIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYE 759
G QDTLYDH G HY+K C I GS DFIFG S +E
Sbjct: 652 KFLGAQDTLYDHIGRHYYKDCYIEGSGDFIFGNALSLFE 768
Score = 29.0 bits (57), Expect(2) = 2e-029
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGK 477
+ EK+ + K FIT + +V W DTA T K
Sbjct: 361 YTEKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGAK 480
>emb|CR305519.1| mte1-25A2FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 786
Score = 92.7 bits (196), Expect(3) = 5e-029
Identities = 38/73 (52%), Positives = 44/73 (60%)
Frame = +1 / +1
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
V +N AP+ KPGA G Q VA+R+ C G QDTLYDH G HY+K C I GS
Sbjct: 133 VCIQNTAPIPKPGAVGKQGVALRISADTAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGS 312
Query: 721 VDFIFGFGRSFYE 759
VDFIFG S +E
Sbjct: 313 VDFIFGNALSLFE 351
Score = 55.6 bits (115), Expect(3) = 5e-029
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / +1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 544 GALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNW 645
Score = 24.9 bits (48), Expect(3) = 5e-029
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 841 DTGFSFKNCSIGG 879
DTGFSF +C + G
Sbjct: 502 DTGFSFVHCKVTG 540
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
Length = 154095
Score = 100 bits (212), Expect(4) = 6e-028
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = +1 / -1
Query: 541 VVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGS 720
++ +N AP+ PGA+G QAVA+R+ G + + C G QDTL+D KG HYFK C I+GS
Sbjct: 85878 ILKKNLAPIPTPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGS 85699
Query: 721 VDFIFGFGRSFYE 759
+DFIFG RS YE
Sbjct: 85698 IDFIFGNARSLYE 85660
Score = 43.7 bits (89), Expect(4) = 6e-028
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +1 / -1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWD 984
G+I+LGRAW SRV+++++ M + + P GW+
Sbjct: 85374 GRIWLGRAWRPYSRVIFAFSIMSDIIAPEGWN 85279
Score = 34.1 bits (68), Expect(4) = 6e-028
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1 / -2
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV + L + QA PF+ T ++ GD W++
Sbjct: 85109 GPGANVNMRVPYVQRLNDTQAFPFLNTSFIDGDQWLE 84999
Score = 33.1 bits (66), Expect(4) = 6e-028
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1 / -1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTA 453
F EK+ + +KP ITF+ + WNDTA
Sbjct: 86172 FSEKVTVPKTKPNITFQGQSYTSTAIAWNDTA 86077
>gb|CG921542.1|CG921542 MBECJ20TF mth2 Medicago truncatula genomic clone 26C16, DNA
sequence
Length = 825
Score = 90.9 bits (192), Expect(3) = 7e-028
Identities = 34/48 (70%), Positives = 36/48 (75%)
Frame = +1 / -1
Query: 616 GTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYE 759
G KT YNCT G QDTLYDHKGLHYF C I+GSVDFI G G+S YE
Sbjct: 816 GIKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLYE 673
Score = 56.1 bits (116), Expect(3) = 7e-028
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAK 1002
G YLGR WG+ S+VV+SYT M V+P GW+ W K
Sbjct: 349 GPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTK 236
Score = 22.6 bits (43), Expect(3) = 7e-028
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 841 DTGFSFKNCSIGG 879
D+GFSFKN + G
Sbjct: 391 DSGFSFKNSMVIG 353
>gb|CX531280.1|CX531280 s13dNF24F12MJ096_248677 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 612
Score = 74.4 bits (156), Expect(2) = 2e-027
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +1 / +3
Query: 382 ISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDA 561
+ PFITF DP +V+ NDTA G DGKP+ T+ SAT+AV+SDYF A + F+N A
Sbjct: 282 VKLPFITFLGDPTDQPIVIGNDTAHDIGGDGKPLRTLNSATVAVDSDYFIAVNMKFQNTA 461
Score = 70.3 bits (147), Expect(2) = 2e-027
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIR 714
G+ QAVA+R G K+ YNC+ G QDTLYDH+GLHYF+ C I+
Sbjct: 474 GSNDDQAVALRTSGNKSAFYNCSFYGFQDTLYDHQGLHYFENCFIQ 611
>gb|DW016825.1|DW016825 EST1225786 MTY Medicago truncatula cDNA clone MTYAM08, mRNA
sequence
Length = 791
Score = 79.4 bits (167), Expect(4) = 2e-025
Identities = 33/61 (54%), Positives = 37/61 (60%)
Frame = +1 / +1
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCR 768
GQAVAVR+ G + YNC G QDTLY H G Y + C I GSVDFIFG + E C
Sbjct: 406 GQAVAVRVSGDRCAFYNCRFLGWQDTLYLHSGKQYLRDCYIEGSVDFIFGNSTALLEHCH 585
Query: 769 I 771
I
Sbjct: 586 I 588
Score = 37.7 bits (76), Expect(4) = 2e-025
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1 / +1
Query: 250 VDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
V +G G+Y + A++ +P+ NT+R I+ + PG
Sbjct: 73 VSQNGTGNYRTVQEAIDAVPLRNTRRTIIRISPG 174
Score = 33.1 bits (66), Expect(4) = 2e-025
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1 / +3
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVP 972
YLGR WG RVV+++T M + P
Sbjct: 702 YLGRPWGPFGRVVFAFTYMDNCIKP 776
Score = 29.5 bits (58), Expect(4) = 2e-025
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTA 453
+R+ L++ +K FITF + V+ WN+TA
Sbjct: 178 YRQPLYVAKTKNFITFVGLCPEDTVLTWNNTA 273
>gb|AC151461.16| Medicago truncatula clone mth2-39h15, WORKING DRAFT SEQUENCE, 6
unordered pieces
Length = 106520
Score = 94.5 bits (200), Expect(3) = 5e-025
Identities = 38/70 (54%), Positives = 45/70 (64%)
Frame = +1 / +3
Query: 550 RNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDF 729
+N +P PG G QAVA+R+ G + Y C G QDTL D G HYFK C I+GS+DF
Sbjct: 96216 QNTSPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDF 96395
Query: 730 IFGFGRSFYE 759
IFG RSFYE
Sbjct: 96396 IFGNARSFYE 96425
Score = 48.3 bits (99), Expect(3) = 5e-025
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1 / +1
Query: 880 VKGGQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQ 993
V G+++LGRAWG + VV+S T M + V GW+ W+
Sbjct: 96982 VGSGKVWLGRAWGAFATVVFSTTNMSDVVAAEGWNDWR 97095
Score = 30.9 bits (61), Expect(3) = 5e-025
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNG 465
FREK+ + +K I + ++ WNDTA + G
Sbjct: 95948 FREKVVVQANKTNIILQGQGYLDTIIEWNDTANSTG 96055
>gb|DW017116.1|DW017116 EST1226077 MTY Medicago truncatula cDNA clone MTYAP66, mRNA
sequence
Length = 837
Score = 102 bits (217), Expect(2) = 2e-023
Identities = 42/83 (50%), Positives = 50/83 (60%)
Frame = +1 / +2
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNC 642
G G+ +GT GSAT AV S YF A + F+N AP+ KPGA G Q VA+R+ C
Sbjct: 548 GAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPKPGAVGKQGVALRISADTAMFLGC 727
Query: 643 TIDGGQDTLYDHKGLHYFKGCLI 711
G QDTLYDH G HY+K C I
Sbjct: 728 KFLGAQDTLYDHIGGHYYKDCYI 796
Score = 29.0 bits (57), Expect(2) = 2e-023
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGK 477
+ EK+ + K FIT + +V W DTA T K
Sbjct: 437 YTEKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGAK 556
>gb|BG583143.1|BG583143 EST484893 GVN Medicago truncatula cDNA clone pGVN-71F10 5' end,
mRNA sequence
Length = 808
Score = 73.9 bits (155), Expect(3) = 5e-023
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = +1 / +1
Query: 463 GKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNC 642
G G+ +GT GSAT AV S YF A + F+N AP+ KP A G Q VA+R+ C
Sbjct: 508 GAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPKPEAVGKQGVALRISADTAMFLGC 687
Query: 643 TIDGGQDTL 669
G QDTL
Sbjct: 688 KFLGAQDTL 714
Score = 44.6 bits (91), Expect(3) = 5e-023
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +1 / +3
Query: 652 GGQDTLYDHKGLHYFKGCLIRGSVDFIFG 738
G T YDH G HY+K I GSVDFIFG
Sbjct: 699 GTGHTWYDHIGRHYYKDWYIEGSVDFIFG 785
Score = 29.0 bits (57), Expect(3) = 5e-023
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGK 477
+ EK+ + K FIT + +V W DTA T K
Sbjct: 397 YTEKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGAK 516
>gb|AC158376.1| Medicago truncatula chromosome 2 clone mth2-64d17, *** SEQUENCING IN
PROGRESS ***, 8 unordered pieces
Length = 126018
Score = 74.4 bits (156), Expect(4) = 6e-022
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = +1 / -1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
GA QAVA R + I NC + G QDTLY H ++K C I G+VDFIFG SF+
Sbjct: 77625 GANAHQAVAFRSDSDLSVIENCELIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASFF 77446
Query: 757 EDCRI 771
+DC I
Sbjct: 77445 QDCEI 77431
Score = 34.1 bits (68), Expect(4) = 6e-022
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1 / -1
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W + SR V+ + + + P GW W
Sbjct: 77259 YLGRPWKEYSRTVFINSFLAAIITPKGWLPW 77167
Score = 27.2 bits (53), Expect(4) = 6e-022
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / -1
Query: 1018 IYYGEFKCFGPGADAKKK 1071
+YYGEF GPG++ K+
Sbjct: 77142 LYYGEFDNSGPGSNLTKR 77089
Score = 24.9 bits (48), Expect(4) = 6e-022
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1 / -1
Query: 835 AIDTGFSFKNCSIGGVK 885
A TGF F NC + G K
Sbjct: 77355 AQSTGFVFHNCLVNGTK 77305
>emb|CT009568.8| M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3,
complete sequence
Length = 121926
Score = 74.4 bits (156), Expect(4) = 6e-022
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = +1 / -1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
GA QAVA R + I NC + G QDTLY H ++K C I G+VDFIFG SF+
Sbjct: 28185 GANAHQAVAFRSDSDLSVIENCELIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASFF 28006
Query: 757 EDCRI 771
+DC I
Sbjct: 28005 QDCEI 27991
Score = 34.1 bits (68), Expect(4) = 6e-022
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1 / -1
Query: 898 YLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
YLGR W + SR V+ + + + P GW W
Sbjct: 27819 YLGRPWKEYSRTVFINSFLAAIITPKGWLPW 27727
Score = 27.2 bits (53), Expect(4) = 6e-022
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / -1
Query: 1018 IYYGEFKCFGPGADAKKK 1071
+YYGEF GPG++ K+
Sbjct: 27702 LYYGEFDNSGPGSNLTKR 27649
Score = 24.9 bits (48), Expect(4) = 6e-022
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1 / -1
Query: 835 AIDTGFSFKNCSIGGVK 885
A TGF F NC + G K
Sbjct: 27915 AQSTGFVFHNCLVNGTK 27865
>gb|AC130803.31| Medicago truncatula clone mth2-10g3, WORKING DRAFT SEQUENCE, 3
ordered pieces
Length = 124006
Score = 82.2 bits (173), Expect(3) = 8e-021
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = +1 / +3
Query: 589 GQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYE 759
G AVA + G K+ I+NC G QDTL+D G HYFK C I+G VDFIFG +SFYE
Sbjct: 5889 GAAVAATISGDKSAIFNCGFLGYQDTLWDRTGRHYFKNCYIQGDVDFIFGEAQSFYE 6059
Score = 49.6 bits (102), Expect(3) = 8e-021
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G++ LGRAWG SRV++ T + V+P GWD W
Sbjct: 6303 GKVNLGRAWGPYSRVIFWETYLSSVVLPQGWDAW 6404
Score = 28.1 bits (55), Expect(3) = 8e-021
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1 / +3
Query: 247 VVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
VVD G+G + I A++ I +N + V + + PG
Sbjct: 4626 VVDQQGRGAFKMIQHAIDSIVNNNNQWVKIHINPG 4730
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 773,204,321
Number of Sequences: 392609
Number of extensions: 9341552
Number of successful extensions: 37410
Number of sequences better than 1.0e-020: 27
length of database: 147,244,331
effective HSP length: 56
effective length of database: 125,258,227
effective search space used: 47598126260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)