TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC150877.14| Medicago truncatula clone mth2-167e16, WORK... 79 1e-028
gb|AC150877.15| Medicago truncatula clone mth2-167e16, WORK... 79 1e-028
gb|AJ497310.1|AJ497310 AJ497310 MTFLOW Medicago truncatula ... 71 9e-027
gb|AL375655.1|AL375655 MtBB16B04R2 MtBB Medicago truncatula... 73 1e-026
gb|AL371822.1|AL371822 MtBA46F10R1 MtBA Medicago truncatula... 73 1e-026
gb|AL366964.1|AL366964 MtBA11C09R1 MtBA Medicago truncatula... 73 6e-026
gb|CA990545.1|CA990545 EST644053 GESD Medicago truncatula c... 71 1e-025
gb|AC157892.2| Medicago truncatula chromosome 7 clone mte1-... 67 1e-023
gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone m... 66 4e-023
gb|DW015951.1|DW015951 EST1224912 MTY Medicago truncatula c... 66 4e-022
gb|BE205431.1|BE205431 EST398107 KV0 Medicago truncatula cD... 68 2e-021
>gb|AC150877.14| Medicago truncatula clone mth2-167e16, WORKING DRAFT SEQUENCE, 10
unordered pieces
Length = 116803
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 27/42 (64%), Positives = 37/42 (88%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
GPH YTASKHA+VGLTK+ + ELG++G+RVNC+SP+ V T++
Sbjct: 99527 GPHAYTASKHAIVGLTKNASCELGKYGIRVNCISPFGVATSM 99652
Score = 68.0 bits (142), Expect(2) = 1e-028
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2 / +2
Query: 236 FVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
FV G NL+G +D+A+AVLYLASDE++YVS NL+VDGG T+ N
Sbjct: 99746 FVRGIGNLRGTTLKTQDIAEAVLYLASDESKYVSGHNLVVDGGITSSRN 99892
>gb|AC150877.15| Medicago truncatula clone mth2-167e16, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 115833
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 27/42 (64%), Positives = 37/42 (88%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
GPH YTASKHA+VGLTK+ + ELG++G+RVNC+SP+ V T++
Sbjct: 93728 GPHAYTASKHAIVGLTKNASCELGKYGIRVNCISPFGVATSM 93603
Score = 68.0 bits (142), Expect(2) = 1e-028
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2 / -2
Query: 236 FVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
FV G NL+G +D+A+AVLYLASDE++YVS NL+VDGG T+ N
Sbjct: 93509 FVRGIGNLRGTTLKTQDIAEAVLYLASDESKYVSGHNLVVDGGITSSRN 93363
>gb|AJ497310.1|AJ497310 AJ497310 MTFLOW Medicago truncatula cDNA clone mt--abc955107f08,
mRNA sequence
Length = 715
Score = 71.2 bits (149), Expect(2) = 9e-027
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = +2 / +2
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H YT+SKHAVVGL K+ A ELG +G+RVNCVSPY V T L+
Sbjct: 335 HAYTSSKHAVVGLMKNTAIELGPYGIRVNCVSPYVVGTPLA 457
Score = 70.3 bits (147), Expect(2) = 9e-027
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2 / +2
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
+NLKG + +P+DVA+A LYL SDE++YVS NL+VDGG T NN F+
Sbjct: 503 SNLKGANLLPKDVAEAALYLGSDESKYVSGHNLVVDGGLTVGNNGFCIFK 652
>gb|AL375655.1|AL375655 MtBB16B04R2 MtBB Medicago truncatula cDNA clone MtBB16B04 T7, mRNA
sequence
Length = 550
Score = 72.5 bits (152), Expect(2) = 1e-026
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2 / +3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
+NLKG + +P+DVA+A LYL SDE++YVS +NL++DGG + NN FE
Sbjct: 252 SNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVIDGGVSVANNGFCVFE 401
Score = 68.4 bits (143), Expect(2) = 1e-026
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2 / +3
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH YT+SKHAVVGL ++ A ELG G+RVNCVSPY + T +
Sbjct: 81 PHAYTSSKHAVVGLMRNTAIELGPFGIRVNCVSPYFLATPM 203
>gb|AL371822.1|AL371822 MtBA46F10R1 MtBA Medicago truncatula cDNA clone MtBA46F10 T7, mRNA
sequence
Length = 523
Score = 72.5 bits (152), Expect(2) = 1e-026
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2 / +1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
+NLKG + +P+DVA+A LYL SDE++YVS +NL++DGG + NN FE
Sbjct: 301 SNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVIDGGVSVANNGFCVFE 450
Score = 68.4 bits (143), Expect(2) = 1e-026
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2 / +1
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH YT+SKHAVVGL ++ A ELG G+RVNCVSPY + T +
Sbjct: 130 PHAYTSSKHAVVGLMRNTAIELGPFGIRVNCVSPYFLATPM 252
>gb|AL366964.1|AL366964 MtBA11C09R1 MtBA Medicago truncatula cDNA clone MtBA11C09 T7, mRNA
sequence
Length = 518
Score = 72.5 bits (152), Expect(2) = 6e-026
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2 / +2
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
+NLKG + +P+DVA+A LYL SDE++YVS +NL++DGG + NN FE
Sbjct: 296 SNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVIDGGVSVANNGFCVFE 445
Score = 66.1 bits (138), Expect(2) = 6e-026
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +2 / +2
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH YT+SKHAV GL ++ A ELG G+RVNCVSPY + T +
Sbjct: 125 PHAYTSSKHAVCGLMRNTAIELGPFGIRVNCVSPYFLATPM 247
>gb|CA990545.1|CA990545 EST644053 GESD Medicago truncatula cDNA clone GESD-29E9, mRNA
sequence
Length = 718
Score = 71.2 bits (149), Expect(2) = 1e-025
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = +2 / +1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H YT+SKHAVVGL K+ A ELG +G+RVNCVSPY V T L+
Sbjct: 367 HAYTSSKHAVVGLMKNTAIELGPYGIRVNCVSPYVVGTPLA 489
Score = 66.1 bits (138), Expect(2) = 1e-025
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2 / +1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLKG + +P+DVA+A LYL SDE++YVS NL+VDGG T N
Sbjct: 535 SNLKGANLLPKDVAEAALYLGSDESKYVSGHNLVVDGGLTVGN 663
>gb|AC157892.2| Medicago truncatula chromosome 7 clone mte1-84h13, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 121593
Score = 67.0 bits (140), Expect(2) = 1e-023
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +2 / +2
Query: 47 TGPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
TGP+ YT SKHA++GL KS ELG +G+RVN +SP+ V T LS
Sbjct: 78473 TGPNGYTTSKHALLGLVKSACGELGGYGIRVNSISPFGVATPLS 78604
Score = 63.8 bits (133), Expect(2) = 1e-023
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +2 / +2
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFED 403
ANLKG+ + VA+A L+LASDEA Y+S NL+VDGGF+ V N A D
Sbjct: 78659 ANLKGIVLKAKHVAEAALFLASDEAVYISGHNLVVDGGFSVVRNTPSAMPD 78811
>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete
sequence
Length = 122492
Score = 65.7 bits (137), Expect(2) = 4e-023
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
GPH YT SK + G+ KSVA+EL G+RVNC+SP A+PT +S+
Sbjct: 23475 GPHPYTISKSTIPGVVKSVASELCGAGIRVNCISPTAIPTPMSL 23344
Score = 63.4 bits (132), Expect(2) = 4e-023
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +2 / -3
Query: 239 VGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
V G + LKG DVA+A LYLASD+A+++S NL+VDGGFT++ N
Sbjct: 23289 VSGLSALKGAKCEDIDVARAALYLASDDAKFISGQNLIVDGGFTSIKN 23146
>gb|DW015951.1|DW015951 EST1224912 MTY Medicago truncatula cDNA clone MTYAB56, mRNA
sequence
Length = 893
Score = 65.7 bits (137), Expect(2) = 4e-022
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
GPH YT SK + G+ KSVA+EL G+RVNC+SP A+PT +S+
Sbjct: 565 GPHPYTISKSTIPGVVKSVASELCGAGIRVNCISPTAIPTPMSL 696
Score = 60.2 bits (125), Expect(2) = 4e-022
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +2 / +2
Query: 239 VGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
V G + LKG DVA+A LYLASD+A+++S NL+VDGGFT++
Sbjct: 752 VSGLSALKGAKCEDIDVARAALYLASDDAKFISRQNLIVDGGFTSI 889
>gb|BE205431.1|BE205431 EST398107 KV0 Medicago truncatula cDNA clone pKV0-21J9, mRNA
sequence
Length = 686
Score = 68.4 bits (143), Expect(2) = 2e-021
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2 / +3
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH YT+SKHAVVGL ++ A ELG G+RVNCVSPY + T +
Sbjct: 411 PHAYTSSKHAVVGLMRNTAIELGPFGIRVNCVSPYFLATPM 533
Score = 55.1 bits (114), Expect(2) = 2e-021
Identities = 20/35 (57%), Positives = 30/35 (85%)
Frame = +2 / +3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMV 355
+NLKG + +P+DVA+A LYL SDE++YVS +NL++
Sbjct: 582 SNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVI 686
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 443,349,960
Number of Sequences: 392609
Number of extensions: 4789341
Number of successful extensions: 30369
Number of sequences better than 1.0e-020: 14
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20419038090
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)