TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067043.2.1
(834 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW774625.1|AW774625 EST333776 KV3 Medicago truncatula cD... 181 2e-050
gb|BI273174.1|BI273174 NF091B12FL1F1096 Developing flower M... 181 2e-049
gb|CX532800.1|CX532800 s13dNF71G05MJ036_271883 Methyl Jasmo... 175 8e-043
gb|AW775842.1|AW775842 EST334907 DSIL Medicago truncatula c... 175 1e-042
gb|BF649665.1|BF649665 NF081H11EC1F1094 Elicited cell cultu... 175 1e-042
gb|BM780235.1|BM780235 EST590811 KV2 Medicago truncatula cD... 74 2e-038
gb|AC128660.31| Medicago truncatula clone mth2-14p23, compl... 78 3e-037
gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula c... 152 6e-036
gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cD... 148 1e-034
gb|CX535226.1|CX535226 s13dNF95H11MJ096_388629 Methyl Jasmo... 140 3e-032
gb|CA919619.1|CA919619 EST637337 MTUS Medicago truncatula c... 139 4e-032
gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cD... 122 1e-026
gb|CA923174.1|CA923174 EST640892 MTUS Medicago truncatula c... 113 3e-024
gb|CA923195.1|CA923195 EST640913 MTUS Medicago truncatula c... 113 3e-024
>gb|AW774625.1|AW774625 EST333776 KV3 Medicago truncatula cDNA clone pKV3-23M13, mRNA
sequence
Length = 648
Score = 181 bits (390), Expect(2) = 2e-050
Identities = 71/152 (46%), Positives = 100/152 (65%)
Frame = +3 / +1
Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188
E + AKA Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLP
Sbjct: 112 EIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLP 291
Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLM 368
LF GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ KD LM
Sbjct: 292 LFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKEGLM 471
Query: 369 DMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDN 464
+LTF FGQ+++L+ +
Sbjct: 472 KLLTFKSVEEMVKKRVEKKATLFGQDISLNSS 567
Score = 112 bits (240), Expect = 6e-024
Identities = 62/142 (43%), Positives = 72/142 (50%)
Frame = -3 / -2
Query: 466 ALSSKVTFCPNVXXXXXXXXXXXXXXXLNVSISIRELLSFSFISRLYS*GASLNFTSATY 287
+L ++ CPN LNV+ I LS I S*G SLNFTSAT
Sbjct: 569 SLLLRLISCPNNVAFFSTLFFTISSTLLNVNNFINPSLSLDRIKGS*S*GDSLNFTSATN 390
Query: 286 LPI*ILCDRTCRHAKSSATVCA*LPSSPSTVNNGSNSSKYIFHIASFTVTNEAKGCKTFG 107
P * L + C + +S A VCA*LPSSP NNGS S KYIFH F + A GCK F
Sbjct: 389 FP**TLLEMACNNERSLAAVCA*LPSSPEATNNGSRS*KYIFHKDLFMLIEAAPGCKNFV 210
Query: 106 EGFVGKRGEGRS*GKNGTSSGF 41
+G G + GK G SSGF
Sbjct: 209 KG*DGTSDNDKFSGKKGFSSGF 144
Score = 39.6 bits (80), Expect(2) = 2e-050
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTK 548
K DP V SKLY++WV+PLTK
Sbjct: 589 KFDPSVASKLYEKWVIPLTK 648
>gb|BI273174.1|BI273174 NF091B12FL1F1096 Developing flower Medicago truncatula cDNA clone
NF091B12FL 5', mRNA sequence
Length = 696
Score = 181 bits (390), Expect(2) = 2e-049
Identities = 71/152 (46%), Positives = 100/152 (65%)
Frame = +3 / +2
Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188
E + AKA Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLP
Sbjct: 62 EIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLP 241
Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLM 368
LF GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ KD LM
Sbjct: 242 LFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKEGLM 421
Query: 369 DMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDN 464
+LTF FGQ+++L+ +
Sbjct: 422 KLLTFKSVEEMVKKRVEKKATLFGQDISLNSS 517
Score = 112 bits (240), Expect = 6e-024
Identities = 62/142 (43%), Positives = 72/142 (50%)
Frame = -3 / -1
Query: 466 ALSSKVTFCPNVXXXXXXXXXXXXXXXLNVSISIRELLSFSFISRLYS*GASLNFTSATY 287
+L ++ CPN LNV+ I LS I S*G SLNFTSAT
Sbjct: 519 SLLLRLISCPNNVAFFSTLFFTISSTLLNVNNFINPSLSLDRIKGS*S*GDSLNFTSATN 340
Query: 286 LPI*ILCDRTCRHAKSSATVCA*LPSSPSTVNNGSNSSKYIFHIASFTVTNEAKGCKTFG 107
P * L + C + +S A VCA*LPSSP NNGS S KYIFH F + A GCK F
Sbjct: 339 FP**TLLEMACNNERSLAAVCA*LPSSPEATNNGSRS*KYIFHKDLFMLIEAAPGCKNFV 160
Query: 106 EGFVGKRGEGRS*GKNGTSSGF 41
+G G + GK G SSGF
Sbjct: 159 KG*DGTSDNDKFSGKKGFSSGF 94
Score = 35.9 bits (72), Expect(2) = 2e-049
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPLT 545
K DP V SKLY +WV+PLT
Sbjct: 539 KFDPSVASKLYXKWVIPLT 595
>gb|CX532800.1|CX532800 s13dNF71G05MJ036_271883 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 666
Score = 175 bits (377), Expect = 8e-043
Identities = 68/147 (46%), Positives = 97/147 (65%)
Frame = +3 / +3
Query: 24 KAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVD 203
+A Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLPLF
Sbjct: 171 QAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLPLFVAS 350
Query: 204 GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTF 383
GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ KD LM +LTF
Sbjct: 351 GDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKEGLMKLLTF 530
Query: 384 XXXXXXXXXXXXXXXXTFGQNVTLDDN 464
FGQ+++L+ +
Sbjct: 531 KSVEEMVKKRVEKKATLFGQDISLNSS 611
Score = 112 bits (240), Expect = 6e-024
Identities = 62/142 (43%), Positives = 72/142 (50%)
Frame = -3 / -3
Query: 466 ALSSKVTFCPNVXXXXXXXXXXXXXXXLNVSISIRELLSFSFISRLYS*GASLNFTSATY 287
+L ++ CPN LNV+ I LS I S*G SLNFTSAT
Sbjct: 613 SLLLRLISCPNNVAFFSTLFFTISSTLLNVNNFINPSLSLDRIKGS*S*GDSLNFTSATN 434
Query: 286 LPI*ILCDRTCRHAKSSATVCA*LPSSPSTVNNGSNSSKYIFHIASFTVTNEAKGCKTFG 107
P * L + C + +S A VCA*LPSSP NNGS S KYIFH F + A GCK F
Sbjct: 433 FP**TLLEMACNNERSLAAVCA*LPSSPEATNNGSRS*KYIFHKDLFMLIEAAPGCKNFV 254
Query: 106 EGFVGKRGEGRS*GKNGTSSGF 41
+G G + GK G SSGF
Sbjct: 253 KG*DGTSDNDKFSGKKGFSSGF 188
>gb|AW775842.1|AW775842 EST334907 DSIL Medicago truncatula cDNA clone pDSIL-3E8, mRNA
sequence
Length = 654
Score = 175 bits (376), Expect = 1e-042
Identities = 67/125 (53%), Positives = 91/125 (72%)
Frame = +3 / +1
Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188
E + AKA Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLP
Sbjct: 238 EIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLP 417
Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLM 368
LF GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ KD LM
Sbjct: 418 LFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKEGLM 597
Query: 369 DMLTF 383
+LTF
Sbjct: 598 KLLTF 612
Score = 107 bits (229), Expect = 2e-022
Identities = 57/114 (50%), Positives = 64/114 (56%)
Frame = -3 / -2
Query: 382 NVSISIRELLSFSFISRLYS*GASLNFTSATYLPI*ILCDRTCRHAKSSATVCA*LPSSP 203
NV+ I LS I S*G SLNFTSAT P * L + C + +S A VCA*LPSSP
Sbjct: 611 NVNNFINPSLSLDRIKGS*S*GDSLNFTSATNFP**TLLEMACNNERSLAAVCA*LPSSP 432
Query: 202 STVNNGSNSSKYIFHIASFTVTNEAKGCKTFGEGFVGKRGEGRS*GKNGTSSGF 41
NNGS S KYIFH F + A GCK F +G G + GK G SSGF
Sbjct: 431 EATNNGSRS*KYIFHKDLFMLIEAAPGCKNFVKG*DGTSDNDKFSGKKGFSSGF 270
>gb|BF649665.1|BF649665 NF081H11EC1F1094 Elicited cell culture Medicago truncatula cDNA
clone NF081H11EC 5', mRNA sequence
Length = 605
Score = 175 bits (376), Expect = 1e-042
Identities = 67/125 (53%), Positives = 91/125 (72%)
Frame = +3 / +2
Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188
E + AKA Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLP
Sbjct: 203 EIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLP 382
Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLM 368
LF GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ KD LM
Sbjct: 383 LFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKEXLM 562
Query: 369 DMLTF 383
+LTF
Sbjct: 563 KLLTF 577
Score = 107 bits (229), Expect = 2e-022
Identities = 57/114 (50%), Positives = 64/114 (56%)
Frame = -3 / -3
Query: 382 NVSISIRELLSFSFISRLYS*GASLNFTSATYLPI*ILCDRTCRHAKSSATVCA*LPSSP 203
NV+ I LS I S*G SLNFTSAT P * L + C + +S A VCA*LPSSP
Sbjct: 576 NVNNFINXSLSLDRIKGS*S*GDSLNFTSATNFP**TLLEMACNNERSLAAVCA*LPSSP 397
Query: 202 STVNNGSNSSKYIFHIASFTVTNEAKGCKTFGEGFVGKRGEGRS*GKNGTSSGF 41
NNGS S KYIFH F + A GCK F +G G + GK G SSGF
Sbjct: 396 EATNNGSRS*KYIFHKDLFMLIEAAPGCKNFVKG*DGTSDNDKFSGKKGFSSGF 235
>gb|BM780235.1|BM780235 EST590811 KV2 Medicago truncatula cDNA clone pKV2-54M6, mRNA
sequence
Length = 818
Score = 74.4 bits (156), Expect(3) = 2e-038
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3 / -1
Query: 51 DVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQT 230
++ FFP LP L P P+VLHP A + +ND +W +YF L+P +GDDG+Y +
Sbjct: 737 NIHFFPTGLPEQLLPPLQYPQVLHPIAESININDNVWSVYFRVLIPQLVKEGDDGNYGSS 558
Query: 231 VAL 239
+L
Sbjct: 557 ASL 549
Score = 69.3 bits (145), Expect(3) = 2e-038
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +3 / -2
Query: 240 DLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXX 419
D+ CLQ LS+RIH GK+VAE KF+ AP Y I +D + LM++LT+
Sbjct: 547 DVMCLQALSKRIHYGKFVAEAKFQAAPDSYKAAIIAQDKDRLMELLTYPEVEESIKRRVA 368
Query: 420 XXXXTFGQNVTLD 458
T+GQ V ++
Sbjct: 367 VKAKTYGQEVAVN 329
Score = 55.1 bits (114), Expect(3) = 2e-038
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +3 / -3
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD*S 590
K++P +++ LY W+MPLTK+V+V YLLR+LD*+
Sbjct: 297 KINPSLVADLYSDWIMPLTKEVQVAYLLRKLD*T 196
>gb|AC128660.31| Medicago truncatula clone mth2-14p23, complete sequence
Length = 99170
Score = 78.0 bits (164), Expect(4) = 3e-037
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +3 / +1
Query: 117 LHPFASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQTVALDLACLQV 260
LHP A+ + +N ++WKMYF +LLPLF GDDG+YAQT A DL+ LQV
Sbjct: 59719 LHPGAASININKSLWKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQV 59862
Score = 64.3 bits (134), Expect(4) = 3e-037
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD*S 590
K DP V SKLY++WV+PLTK+V+VEYLLRRLD*+
Sbjct: 61252 KFDPSVASKLYEKWVIPLTKEVQVEYLLRRLD*N 61353
Score = 54.2 bits (112), Expect(4) = 3e-037
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 252 LQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEK 350
LQ +S+R+H GK+VAEVKF+++PQ+Y LI+ K
Sbjct: 60223 LQAISKRVHYGKFVAEVKFRESPQDYEPLIRSK 60321
Score = 41.4 bits (84), Expect(4) = 3e-037
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3 / +1
Query: 24 KAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLH 122
+A Y+ PE+ PFFP++L L P+ P KV+H
Sbjct: 59533 QAGRYKNPEENPFFPENLSLSLVPSYPFTKVIH 59631
>gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula cDNA clone pGPOD-11O18 5' end,
mRNA sequence
Length = 567
Score = 152 bits (327), Expect = 6e-036
Identities = 58/127 (45%), Positives = 80/127 (62%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP L P P+VLHP A + +ND +W +YF L
Sbjct: 183 ETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININDNVWSVYFRVL 362
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
+P +GDDG+Y + D+ CLQ LS+RIH GK+VAE KF+ AP Y I +D +
Sbjct: 363 IPQLVKEGDDGNYGSSAVCDVMCLQALSKRIHYGKFVAEAKFQAAPDSYKAAIIAQDKDR 542
Query: 363 LMDMLTF 383
LM++LT+
Sbjct: 543 LMELLTY 563
>gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cDNA clone pKV3-39D20 5' end,
mRNA sequence
Length = 749
Score = 148 bits (317), Expect = 1e-034
Identities = 58/126 (46%), Positives = 77/126 (61%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP L P P+VLHP A + +ND +W +YF L
Sbjct: 372 ETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININDNVWSVYFRVL 551
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
+P +GDDG+Y D+ CLQ LS+RIH GK+ AE KF+ AP Y I +D +
Sbjct: 552 IPQLVKEGDDGNYGSFAVCDVMCLQALSKRIHYGKFGAEAKFQAAPDSYKAAIIAQDKDR 731
Query: 363 LMDMLT 380
LM+MLT
Sbjct: 732 LMEMLT 749
>gb|CX535226.1|CX535226 s13dNF95H11MJ096_388629 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 561
Score = 140 bits (300), Expect = 3e-032
Identities = 54/99 (54%), Positives = 72/99 (72%)
Frame = +3 / +3
Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188
E + AKA Y+ PE+ PFFP++L L P+ P K LHP A+ + +N ++WKMYF +LLP
Sbjct: 264 EIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLP 443
Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVK 305
LF GDDG+YAQT A DL+ LQ +S+R+H GK+VAEVK
Sbjct: 444 LFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVK 560
>gb|CA919619.1|CA919619 EST637337 MTUS Medicago truncatula cDNA clone MTUS-15H1, mRNA
sequence
Length = 606
Score = 139 bits (299), Expect = 4e-032
Identities = 57/142 (40%), Positives = 85/142 (59%)
Frame = +3 / -2
Query: 165 MYFDELLPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
+YF L+P +GDDG+Y + D+ CLQ LS+RIH GK+VAE KF+ AP Y I
Sbjct: 602 VYFRVLIPQLVKEGDDGNYGSSAVCDVMCLQALSKRIHYGKFVAEAKFQAAPDSYKAAII 423
Query: 345 EKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYD 524
+D + LM++LT+ T+GQ V ++ + K++P +++ LY
Sbjct: 422 AQDKDRLMELLTYPEVEESIKRRVAVKAKTYGQEVAVNLKDQKTEPVYKINPSLVADLYS 243
Query: 525 QWVMPLTKDVEVEYLLRRLD*S 590
W+MPLTK+V+V YLLR+LD*+
Sbjct: 242 DWIMPLTKEVQVAYLLRKLD*T 177
>gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cDNA clone pKV0-15B16, mRNA
sequence
Length = 657
Score = 122 bits (260), Expect = 1e-026
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP L P P+VLHP A + +ND +W +YF L
Sbjct: 365 ETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININDNVWSVYFRVL 544
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYV 293
+P +GDDG+Y + D+ CLQ LS+RIH GK+V
Sbjct: 545 IPQLVKEGDDGNYGSSAVCDVMCLQALSKRIHYGKFV 655
>gb|CA923174.1|CA923174 EST640892 MTUS Medicago truncatula cDNA clone MTUS-64A11, mRNA
sequence
Length = 704
Score = 113 bits (242), Expect = 3e-024
Identities = 47/113 (41%), Positives = 67/113 (59%)
Frame = +3 / -3
Query: 252 LQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXX 431
LQ LS+RIH GK+VAE KF++ P Y IK KD L+++LT+
Sbjct: 585 LQALSKRIHYGKFVAEAKFQECPSVYEAAIKAKDRKRLLELLTYESVEESVQKRVEMKAR 406
Query: 432 TFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD*S 590
TF Q V +++ D ++ ++ LY +W+MPLTK+V+VEYLLRRLD*+
Sbjct: 405 TFSQEVKINEAGDVADPVYRIKSGLIGNLYGKWIMPLTKEVQVEYLLRRLD*T 247
>gb|CA923195.1|CA923195 EST640913 MTUS Medicago truncatula cDNA clone MTUS-64D12, mRNA
sequence
Length = 803
Score = 113 bits (242), Expect = 3e-024
Identities = 47/113 (41%), Positives = 67/113 (59%)
Frame = +3 / -2
Query: 252 LQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXX 431
LQ LS+RIH GK+VAE KF++ P Y IK KD L+++LT+
Sbjct: 586 LQALSKRIHYGKFVAEAKFQECPSVYEAAIKAKDRKRLLELLTYESVEESVQKRVEMKAR 407
Query: 432 TFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD*S 590
TF Q V +++ D ++ ++ LY +W+MPLTK+V+VEYLLRRLD*+
Sbjct: 406 TFSQEVKINEAGDVADPVYRIKSGLIGNLYGKWIMPLTKEVQVEYLLRRLD*T 248
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 836,728,231
Number of Sequences: 392609
Number of extensions: 11840155
Number of successful extensions: 58658
Number of sequences better than 1.0e-020: 16
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 28107688235
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)