TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM779996.1|BM779996 EST590572 KV2 Medicago truncatula cD... 153 8e-064
gb|BI273241.1|BI273241 NF098G06FL1F1051 Developing flower M... 153 6e-056
gb|AC140068.18| Medicago truncatula clone mth2-15l24, compl... 132 2e-054
emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4... 132 6e-054
gb|AJ621868.1|AJ621868 AJ621868 Medicago truncatula J5 root... 153 1e-048
gb|AW684460.1|AW684460 NF017B11NR1F1000 Nodulated root Medi... 153 4e-047
gb|CX541590.1|CX541590 s13dNF87H11GS096_466482 Germinating ... 183 3e-045
gb|AL376427.1|AL376427 MtBB23G11F1 MtBB Medicago truncatula... 177 2e-043
emb|CR330792.1| mte1-6P13FM1 BAC end, cultivar Jemalong A17... 133 1e-039
gb|AL376428.1|AL376428 MtBB23G11R1 MtBB Medicago truncatula... 153 4e-036
gb|BE203858.1|BE203858 EST396534 KV0 Medicago truncatula cD... 150 4e-035
gb|BF004435.1|BF004435 EST432933 KV1 Medicago truncatula cD... 70 1e-025
>gb|BM779996.1|BM779996 EST590572 KV2 Medicago truncatula cDNA clone pKV2-53L23, mRNA
sequence
Length = 729
Score = 153 bits (329), Expect(2) = 8e-064
Identities = 63/78 (80%), Positives = 69/78 (88%)
Frame = +2 / -1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+QNLP+ETTPMMLQMLF QYPGFKEVRM+EAKPGIAFVEYGDE Q+T AM LQ
Sbjct: 417 PNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQ 238
Query: 776 SFKITKENQMVITYAKK* 829
FKI +N M+ITYAKK*
Sbjct: 237 GFKIAPQNPMLITYAKK* 184
Score = 112 bits (240), Expect(2) = 8e-064
Identities = 45/68 (66%), Positives = 58/68 (85%)
Frame = +2 / -1
Query: 278 EDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQK 457
EDV SA+ AL++MQGFPFYDK MRIQYA+TKSD+IAKA+GTFVPRE+RKR D+K +K++
Sbjct: 729 EDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKGKKRKD 550
Query: 458 REHHHDAG 481
+ + AG
Sbjct: 549 QNDANLAG 526
Score = 93.6 bits (198), Expect(3) = 2e-032
Identities = 46/78 (58%), Positives = 54/78 (69%)
Frame = -2 / +2
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
YFFA V+ I F ILK +A V +SSPYSTKAIPGFAS I TSL PGY + +I S
Sbjct: 185 YFFA*VINIGFCGAILKPCSACIAIVDCISSPYSTKAIPGFASTILTSLNPGY*RNNI*S 364
Query: 648 IMGVVSCGKFWTNKMLFG 595
IMGVVS G+F ++LFG
Sbjct: 365 IMGVVSLGRF*IKRILFG 418
Score = 79.0 bits (166), Expect(2) = 3e-024
Identities = 29/71 (40%), Positives = 48/71 (67%)
Frame = -1 / +1
Query: 805 HLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLVW 626
H V + E L+ +H GL L+SI H+ N L +H N LE+R+L ++HL+HHG LV
Sbjct: 208 HRVLWGYLETLQRLHSHRGLHLISIFHKGNSWLCFNHSNFLESRILKKQHLKHHGSGLVR 387
Query: 625 QVLDKQDVVWY 593
++L+K++++W+
Sbjct: 388 KILNKENIIWW 420
Score = 68.4 bits (143), Expect(3) = 2e-032
Identities = 32/44 (72%), Positives = 35/44 (79%)
Frame = -2 / +2
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATS 280
RGTKVPSA A+ SDLVLAY IL+ LS*KGKPCI RA A+ TS
Sbjct: 596 RGTKVPSALAMTSDLVLAYCILMGLS*KGKPCICLRALEAEVTS 727
Score = 54.7 bits (113), Expect(2) = 3e-024
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = -1 / +1
Query: 484 STSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKALHPLQ 305
S+S + ++ +L F F I PLS F R K Y+I F GIL SH +IEG+ LH +
Sbjct: 523 SSS*ISIVLVLPFFAFVIVPLSFFPRNKSTFCFSYDIRFSPGILYSHGLIIEGETLHLPK 702
Query: 304 SLSS 293
S+ S
Sbjct: 703 SIRS 714
Score = 21.7 bits (41), Expect(3) = 2e-032
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -2 / +2
Query: 597 GTIISGIMTLCPPAIGIWVSCG 532
G SG PP GIW G
Sbjct: 419 GAGASGSKDFAPPG*GIWDKAG 484
>gb|BI273241.1|BI273241 NF098G06FL1F1051 Developing flower Medicago truncatula cDNA clone
NF098G06FL 5', mRNA sequence
Length = 661
Score = 153 bits (328), Expect(2) = 6e-056
Identities = 62/113 (54%), Positives = 83/113 (73%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL +FSQ+G+ILD++A KT K +GQAWV F +V +A
Sbjct: 53 IPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAA 232
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQ 454
+ A+++MQ FPFY+K MRIQYAKTKSD IAK +G+FVPRE++K+ +EK+EKK+
Sbjct: 233 SNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKK 391
Score = 89.5 bits (189), Expect(2) = 6e-056
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2 / +2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQ 748
E PNNILF++NLP+ETT ML+MLF QYPGFKEV +I AKPGIAFV + ++ Q
Sbjct: 497 EAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVPLIXAKPGIAFVNFENDGQ 661
Score = 68.4 bits (143), Expect(2) = 4e-023
Identities = 38/75 (50%), Positives = 43/75 (57%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTK+PS+ AI SD V AY*ILI S* GK CI A +A TS K T A P V +A
Sbjct: 345 GTKLPSSLAIQSDFVFAY*ILIGFS*NGKFCICRTALLAAVTSLKQTHACPRSLGVFRAI 166
Query: 228 TSRIFPNWEKTAVRD 184
S+I P E RD
Sbjct: 165 MSKILPY*ENKQYRD 121
Score = 64.3 bits (134), Expect(2) = 4e-023
Identities = 31/48 (64%), Positives = 33/48 (68%)
Frame = -2 / -2
Query: 726 TKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
T AIPGFA I TSLKPGY KSI SI+ VVS GKF NK+L G S
Sbjct: 639 TNAIPGFAXIKGTSLKPGYCSKSISSILPVVS*GKFSMNKILLGAAAS 496
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence
Length = 111620
Score = 132 bits (282), Expect(3) = 2e-054
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +2 / +1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E PNNILF++NLP+ETT ML+MLF QYPGFKEVR+IEAKPGIAFV++ D+ Q++ AM
Sbjct: 98707 EAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAM 98886
Query: 764 NNLQSFKITKENQMVITYAKK* 829
LQ FKIT +N M+I +AKK*
Sbjct: 98887 QALQGFKITPQNPMIINFAKK* 98952
Score = 80.3 bits (169), Expect(3) = 2e-054
Identities = 30/54 (55%), Positives = 43/54 (79%)
Frame = +2 / +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL +FSQ+G+ILD++A KT K +GQAWV F +V +A+ A+++MQ FPFY+K M
Sbjct: 95030 SLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPM 95191
Score = 60.2 bits (125), Expect(3) = 2e-054
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2 / +2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEK 448
RIQYAKTKSD IAK +G+FVPRE++K+ +EK E+
Sbjct: 95690 RIQYAKTKSDCIAKEEGSFVPREKKKKQEEKGEE 95791
>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE
Length = 199033
Score = 132 bits (282), Expect(3) = 6e-054
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +2 / -3
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E PNNILF++NLP+ETT ML+MLF QYPGFKEVR+IEAKPGIAFV++ D+ Q++ AM
Sbjct: 163775 EAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAM 163596
Query: 764 NNLQSFKITKENQMVITYAKK* 829
LQ FKIT +N M+I +AKK*
Sbjct: 163595 QALQGFKITPQNPMIINFAKK* 163530
Score = 80.3 bits (169), Expect(3) = 6e-054
Identities = 30/54 (55%), Positives = 43/54 (79%)
Frame = +2 / -1
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL +FSQ+G+ILD++A KT K +GQAWV F +V +A+ A+++MQ FPFY+K M
Sbjct: 167452 SLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPM 167291
Score = 60.2 bits (125), Expect(3) = 6e-054
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2 / -1
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEK 448
RIQYAKTKSD IAK +G+FVPRE++K+ +EK E+
Sbjct: 166792 RIQYAKTKSDCIAKEEGSFVPREKKKKQEEKGEE 166691
>gb|AJ621868.1|AJ621868 AJ621868 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs771, mRNA sequence
Length = 595
Score = 153 bits (328), Expect(2) = 1e-048
Identities = 62/113 (54%), Positives = 83/113 (73%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL +FSQ+G+ILD++A KT K +GQAWV F +V +A
Sbjct: 45 IPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAA 224
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQ 454
+ A+++MQ FPFY+K MRIQYAKTKSD IAK +G+FVPRE++K+ +EK+EKK+
Sbjct: 225 SNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKK 383
Score = 64.8 bits (135), Expect(2) = 1e-048
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2 / +3
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKE 688
E PNNILF++NLP+ETT ML+MLF QYPGFKE
Sbjct: 489 EAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKE 593
>gb|AW684460.1|AW684460 NF017B11NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF017B11NR 5', mRNA sequence
Length = 603
Score = 153 bits (328), Expect(2) = 4e-047
Identities = 62/113 (54%), Positives = 83/113 (73%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL +FSQ+G+ILD++A KT K +GQAWV F +V +A
Sbjct: 44 IPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAA 223
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQ 454
+ A+++MQ FPFY+K MRIQYAKTKSD IAK +G+FVPRE++K+ +EK+EKK+
Sbjct: 224 SNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKK 382
Score = 57.4 bits (119), Expect(2) = 4e-047
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +2 / +1
Query: 569 RVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMI 700
R P +ILF++NLP+ET ML MLF QYP FKEVR+I
Sbjct: 472 RFWCPRXSCSQHILFIENLPYETPGRMLXMLFXQYPXFKEVRLI 603
>gb|CX541590.1|CX541590 s13dNF87H11GS096_466482 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 568
Score = 183 bits (395), Expect = 3e-045
Identities = 76/112 (67%), Positives = 90/112 (80%)
Frame = +2 / +1
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 298
P N+TIY SL AVFSQFGKIL+VLAFKTLKHKGQAWV+FEDV SA+
Sbjct: 181 PQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSAS 360
Query: 299 EALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQ 454
AL++MQGFPFYDK MRIQYA+TKSD+IAKA+GTFVPRE+RKR D+K +K++
Sbjct: 361 NALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKGKKRK 516
Score = 127 bits (271), Expect = 4e-028
Identities = 57/76 (75%), Positives = 62/76 (81%)
Frame = -2 / -3
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGTKVPSA A+ SDLVLAY IL+ LS*KGKPCI RA A+ TSSK TQA*PLCF+VLKA
Sbjct: 473 RGTKVPSALAMTSDLVLAYCILMGLS*KGKPCICLRALEAEVTSSKITQA*PLCFRVLKA 294
Query: 231 STSRIFPNWEKTAVRD 184
TS IFPNW KTA +D
Sbjct: 293 KTSSIFPNWLKTACKD 246
>gb|AL376427.1|AL376427 MtBB23G11F1 MtBB Medicago truncatula cDNA clone MtBB23G11 T3, mRNA
sequence
Length = 383
Score = 177 bits (382), Expect = 2e-043
Identities = 72/94 (76%), Positives = 86/94 (91%)
Frame = +2 / +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
SL AVFSQFGKIL+V AFKTLKHKGQAWV+FEDV SA+ AL++MQGFPFYDK MRIQYA+
Sbjct: 62 SLHAVFSQFGKILEVSAFKTLKHKGQAWVIFEDVTSASNALRQMQGFPFYDKPMRIQYAR 241
Query: 365 TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREH 466
TKSD+IAKA+GTFVPRE+RKR D+K+ KK+K ++
Sbjct: 242 TKSDVIAKAEGTFVPREKRKRHDDKAGKKRKDQN 343
Score = 127 bits (271), Expect = 4e-028
Identities = 57/76 (75%), Positives = 62/76 (81%)
Frame = -2 / -3
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGTKVPSA A+ SDLVLAY IL+ LS*KGKPCI RA A+ TSSK TQA*PLCF+VLKA
Sbjct: 288 RGTKVPSALAMTSDLVLAYCILMGLS*KGKPCICLRALEAEVTSSKITQA*PLCFRVLKA 109
Query: 231 STSRIFPNWEKTAVRD 184
TS IFPNW KTA +D
Sbjct: 108 ETSSIFPNWLKTACKD 61
>emb|CR330792.1| mte1-6P13FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 703
Score = 133 bits (285), Expect(2) = 1e-039
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = +2 / +2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E PNNILF++NLP+ETT ML+MLF QYPGFKEVR+IEAKPGIAFV++ DE Q++ AM
Sbjct: 224 EAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEGQSSMAM 403
Query: 764 NNLQSFKITKENQMVITYAKK* 829
LQ FKIT +N M+I +AKK*
Sbjct: 404 QALQGFKITPQNPMIINFAKK* 469
Score = 54.7 bits (113), Expect(2) = 1e-039
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = +2 / +2
Query: 356 YAKTKSDIIAKADGTFVPRERRKRTDEKSEKK 451
Y KTKSD ++K +G+FVPRE++K+ +EK+EKK
Sbjct: 23 YTKTKSDCVSKEEGSFVPREKKKKQEEKAEKK 118
>gb|AL376428.1|AL376428 MtBB23G11R1 MtBB Medicago truncatula cDNA clone MtBB23G11 T7, mRNA
sequence
Length = 456
Score = 153 bits (329), Expect = 4e-036
Identities = 63/78 (80%), Positives = 69/78 (88%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+QNLP+ETTPMMLQMLF QYPGFKEVRM+EAKPGIAFVEYGDE Q+T AM LQ
Sbjct: 28 PNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQ 207
Query: 776 SFKITKENQMVITYAKK* 829
FKI +N M+ITYAKK*
Sbjct: 208 GFKIAPQNPMLITYAKK* 261
>gb|BE203858.1|BE203858 EST396534 KV0 Medicago truncatula cDNA clone pKV0-13C3, mRNA
sequence
Length = 504
Score = 150 bits (322), Expect = 4e-035
Identities = 62/77 (80%), Positives = 68/77 (88%)
Frame = +2 / -3
Query: 599 NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQS 778
NNILF+QNLP+ETTPMMLQMLF QYPGFKEVRM+EAKPGIAFVEYGDE Q+T AM LQ
Sbjct: 502 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQG 323
Query: 779 FKITKENQMVITYAKK* 829
FKI +N M+ITYAKK*
Sbjct: 322 FKIAPQNPMLITYAKK* 272
>gb|BF004435.1|BF004435 EST432933 KV1 Medicago truncatula cDNA clone pKV1-17L19, mRNA
sequence
Length = 614
Score = 69.8 bits (146), Expect(3) = 1e-025
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +2 / +3
Query: 335 DKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
DK M IQ A+TKSD+IAKA+GTFVPRE+RKR D+K +K++ + + AG
Sbjct: 6 DKPMIIQSARTKSDVIAKAEGTFVPREKRKRHDDKGKKRKDQNDANLAG 152
Score = 60.6 bits (126), Expect(3) = 1e-025
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQY 673
PNNILF+QNLP+ETTPMMLQMLF QY
Sbjct: 536 PNNILFIQNLPNETTPMMLQMLFLQY 613
Score = 29.5 bits (58), Expect(3) = 1e-025
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2 / +2
Query: 536 QLTQIPIAGGQRVMMPEIIVPNN 604
QL+QIP GG + ++PE P N
Sbjct: 473 QLSQIPYPGGAKSLLPEAPAPPN 541
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 909,452,662
Number of Sequences: 392609
Number of extensions: 12263981
Number of successful extensions: 50958
Number of sequences better than 1.0e-020: 14
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 38826108324
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)