TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW287922.2|AW287922 N100766e rootphos(-) Medicago trunca... 185 6e-046
gb|AL389731.1|AL389731 MtBC57A11F1 MtBC Medicago truncatula... 185 6e-046
gb|AJ502939.1|AJ502939 AJ502939 MTAMP Medicago truncatula c... 185 6e-046
gb|AL383638.1|AL383638 MtBC15F07F1 MtBC Medicago truncatula... 182 4e-045
gb|AJ498781.1|AJ498781 AJ498781 MTPOSE Medicago truncatula ... 166 4e-041
>gb|AW287922.2|AW287922 N100766e rootphos(-) Medicago truncatula cDNA clone MHRP-11B4, mRNA
sequence
Length = 539
Score = 185 bits (399), Expect = 6e-046
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 55 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 234
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 235 EPHIMLFRRPLNY 273
Score = 137 bits (294), Expect = 2e-031
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -3 / -1
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G S+MCGSGR IA* T PRLCCTPIARHSFSER RFLG + ATSGGRTTCLYS*VSSK
Sbjct: 263 GLLKSIMCGSGR*IA**TQPRLCCTPIARHSFSERSRFLGSNFATSGGRTTCLYS*VSSK 84
Query: 126 YFSEYWI*PM 97
YFSEYWI*P+
Sbjct: 83 YFSEYWI*PI 54
>gb|AL389731.1|AL389731 MtBC57A11F1 MtBC Medicago truncatula cDNA clone MtBC57A11 T3, mRNA
sequence
Length = 492
Score = 185 bits (399), Expect = 6e-046
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 40 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 219
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 220 EPHIMLFRRPLNY 258
Score = 137 bits (294), Expect = 2e-031
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -3 / -2
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G S+MCGSGR IA* T PRLCCTPIARHSFSER RFLG + ATSGGRTTCLYS*VSSK
Sbjct: 248 GLLKSIMCGSGR*IA**TQPRLCCTPIARHSFSERSRFLGSNFATSGGRTTCLYS*VSSK 69
Query: 126 YFSEYWI*PM 97
YFSEYWI*P+
Sbjct: 68 YFSEYWI*PI 39
>gb|AJ502939.1|AJ502939 AJ502939 MTAMP Medicago truncatula cDNA clone mtgmadc120027e09,
mRNA sequence
Length = 578
Score = 185 bits (399), Expect = 6e-046
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 68 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 247
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 248 EPHIMLFRRPLNY 286
Score = 137 bits (294), Expect = 2e-031
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -3 / -3
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G S+MCGSGR IA* T PRLCCTPIARHSFSER RFLG + ATSGGRTTCLYS*VSSK
Sbjct: 276 GLLKSIMCGSGR*IA**TQPRLCCTPIARHSFSERSRFLGSNFATSGGRTTCLYS*VSSK 97
Query: 126 YFSEYWI*PM 97
YFSEYWI*P+
Sbjct: 96 YFSEYWI*PI 67
>gb|AL383638.1|AL383638 MtBC15F07F1 MtBC Medicago truncatula cDNA clone MtBC15F07 T3, mRNA
sequence
Length = 482
Score = 182 bits (393), Expect = 4e-045
Identities = 71/73 (97%), Positives = 72/73 (98%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQ SRGWVHYAIHRP
Sbjct: 48 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQXSRGWVHYAIHRP 227
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 228 EPHIMLFRRPLNY 266
Score = 137 bits (294), Expect = 2e-031
Identities = 58/70 (82%), Positives = 61/70 (87%)
Frame = -3 / -2
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G S+MCGSGR IA* T PRLCCTPIARHSFSER RFLG + ATSGGRTTCLYS*VSSK
Sbjct: 256 GLLKSIMCGSGR*IA**TQPRLCCTPIARHSFSERSRFLGSNFATSGGRTTCLYS*VSSK 77
Query: 126 YFSEYWI*PM 97
YFSEYWI*P+
Sbjct: 76 YFSEYWI*PI 47
>gb|AJ498781.1|AJ498781 AJ498781 MTPOSE Medicago truncatula cDNA clone mt--acc955208f02,
mRNA sequence
Length = 425
Score = 166 bits (358), Expect(2) = 4e-041
Identities = 64/65 (98%), Positives = 65/65 (100%)
Frame = +2 / +2
Query: 122 KYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFR 301
KYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFR
Sbjct: 92 KYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFR 271
Query: 302 RPINY 316
RP+NY
Sbjct: 272 RPLNY 286
Score = 119 bits (254), Expect = 6e-026
Identities = 51/62 (82%), Positives = 53/62 (85%)
Frame = -3 / -3
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G S+MCGSGR IA* T PRLCCTPIARHSFSER RFLG + ATSGGRTTCLYS*VSSK
Sbjct: 276 GLLKSIMCGSGR*IA**TQPRLCCTPIARHSFSERSRFLGSNFATSGGRTTCLYS*VSSK 97
Query: 126 YF 121
YF
Sbjct: 96 YF 91
Score = 23.1 bits (44), Expect(2) = 4e-041
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYF 130
MGQIQYS++ F
Sbjct: 67 MGQIQYSDEVF 99
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 645,490,289
Number of Sequences: 392609
Number of extensions: 8514173
Number of successful extensions: 41818
Number of sequences better than 1.0e-020: 6
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 25838906225
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)