TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ164948.1|BQ164948 EST610817 KVKC Medicago truncatula c... 127 2e-028
gb|BI271829.1|BI271829 NF012D11FL1F1093 Developing flower M... 124 1e-027
>gb|BQ164948.1|BQ164948 EST610817 KVKC Medicago truncatula cDNA clone pKVKC-3H9, mRNA
sequence
Length = 778
Score = 127 bits (272), Expect = 2e-028
Identities = 53/126 (42%), Positives = 77/126 (61%)
Frame = -1 / -1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI +C++A K GFEV++ KDLA P PWY +D FS + F+
Sbjct: 595 EIEIGDGLPDIRLTTKCLEALKQAGFEVIWEKDLASDSPLPWYLPLDKSHFSLSSFRLTA 416
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR+ TR +V LEF+ +AP GS + L A++GL++GG+ IFT +F L RKP E
Sbjct: 415 VGRLFTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKPASE 236
Query: 274 ADIVNG 257
++ ++G
Sbjct: 235 SN*ISG 218
>gb|BI271829.1|BI271829 NF012D11FL1F1093 Developing flower Medicago truncatula cDNA clone
NF012D11FL 5', mRNA sequence
Length = 675
Score = 124 bits (266), Expect = 1e-027
Identities = 52/126 (41%), Positives = 76/126 (60%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI +C++A K GFEV++ KDLA P PWY +D FS + F+
Sbjct: 188 EIEIGDGLPDIRLTTKCLEALKQAGFEVIWEKDLASDSPLPWYLPLDKSHFSLSSFRLTA 367
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR+ TR +V LEF+ +AP GS + L A++GL++GG+ IFT +F L RKP
Sbjct: 368 VGRLFTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKPASX 547
Query: 274 ADIVNG 257
++ ++G
Sbjct: 548 SN*ISG 565
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 605,000,273
Number of Sequences: 392609
Number of extensions: 8916396
Number of successful extensions: 61072
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 22813863545
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)