TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647051.2.1
(627 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG644474.1|BG644474 EST506093 KV3 Medicago truncatula cD... 77 3e-021
gb|BI310352.1|BI310352 EST5312102 GESD Medicago truncatula ... 77 3e-021
gb|AL372076.1|AL372076 MtBA48D09R1 MtBA Medicago truncatula... 77 3e-021
gb|BE320131.2|BE320131 NF025E07RT1F1051 Developing root Med... 77 3e-021
>gb|BG644474.1|BG644474 EST506093 KV3 Medicago truncatula cDNA clone pKV3-37K14 5' end,
mRNA sequence
Length = 783
Score = 76.7 bits (161), Expect(2) = 3e-021
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +2 / -1
Query: 92 GVLTVAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSEL 256
G LT++FSKD S+P IENK L +AVLES+IG GVSPAAK SLA+R+S+L
Sbjct: 417 GSLTISFSKDGSIPEVETAVIENKLLSQAVLESMIGAHGVSPAAKQSLASRLSKL 253
Score = 46.0 bits (94), Expect(2) = 3e-021
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2 / -1
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFS 115
E A++KF VFK ETF PG+SILFT S G+ ++ S
Sbjct: 513 EAKAIDKFVSVFKDETFPPGSSILFTVSPKGLGSLTIS 400
>gb|BI310352.1|BI310352 EST5312102 GESD Medicago truncatula cDNA clone pGESD7H10 5' end,
mRNA sequence
Length = 701
Score = 76.7 bits (161), Expect(2) = 3e-021
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +2 / +3
Query: 92 GVLTVAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSEL 256
G LT++FSKD S+P IENK L +AVLES+IG GVSPAAK SLA+R+S+L
Sbjct: 471 GSLTISFSKDGSIPEVETAVIENKLLSQAVLESMIGAHGVSPAAKQSLASRLSKL 635
Score = 46.0 bits (94), Expect(2) = 3e-021
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFS 115
E A++KF VFK ETF PG+SILFT S G+ ++ S
Sbjct: 375 EAKAIDKFVSVFKDETFPPGSSILFTVSPKGLGSLTIS 488
>gb|AL372076.1|AL372076 MtBA48D09R1 MtBA Medicago truncatula cDNA clone MtBA48D09 T7, mRNA
sequence
Length = 542
Score = 76.7 bits (161), Expect(2) = 3e-021
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +2 / +3
Query: 92 GVLTVAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSEL 256
G LT++FSKD S+P IENK L +AVLES+IG GVSPAAK SLA+R+S+L
Sbjct: 111 GSLTISFSKDGSIPEVETAVIENKLLSQAVLESMIGAHGVSPAAKQSLASRLSKL 275
Score = 46.0 bits (94), Expect(2) = 3e-021
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFS 115
E A++KF VFK ETF PG+SILFT S G+ ++ S
Sbjct: 15 EAKAIDKFVSVFKDETFPPGSSILFTVSPKGLGSLTIS 128
>gb|BE320131.2|BE320131 NF025E07RT1F1051 Developing root Medicago truncatula cDNA clone
NF025E07RT 5', mRNA sequence
Length = 509
Score = 76.7 bits (161), Expect(2) = 3e-021
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +2 / +3
Query: 92 GVLTVAFSKDSSVPAAGGVAIENKRLCEAVLESIIGERGVSPAAKLSLAARVSEL 256
G LT++FSKD S+P IENK L +AVLES+IG GVSPAAK SLA+R+S+L
Sbjct: 219 GSLTISFSKDGSIPEVETAVIENKLLSQAVLESMIGAHGVSPAAKQSLASRLSKL 383
Score = 46.0 bits (94), Expect(2) = 3e-021
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 2 EGVAVEKFREVFKPETFAPGASILFTHSTAGVLTVAFS 115
E A++KF VFK ETF PG+SILFT S G+ ++ S
Sbjct: 123 EAKAIDKFVSVFKDETFPPGSSILFTVSPKGLGSLTIS 236
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 340,083,090
Number of Sequences: 392609
Number of extensions: 3051992
Number of successful extensions: 22179
Number of sequences better than 1.0e-020: 4
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19410690530
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)