TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL379756.1|AL379756 MtBB47C08F1 MtBB Medicago truncatula... 251 7e-066
gb|AL379757.1|AL379757 MtBB47C08R1 MtBB Medicago truncatula... 251 7e-066
gb|BG450580.1|BG450580 NF036H02DT1F1028 Drought Medicago tr... 246 3e-064
gb|AL379311.1|AL379311 MtBB44E11R1 MtBB Medicago truncatula... 238 5e-062
gb|AJ845996.1|AJ845996 AJ845996 MtSC4 Medicago truncatula c... 212 5e-054
gb|AL366866.1|AL366866 MtBA10F06R1 MtBA Medicago truncatula... 147 2e-034
gb|CB894781.1|CB894781 EST647573 HOGA Medicago truncatula c... 125 8e-028
>gb|AL379756.1|AL379756 MtBB47C08F1 MtBB Medicago truncatula cDNA clone MtBB47C08 T3, mRNA
sequence
Length = 485
Score = 251 bits (543), Expect = 7e-066
Identities = 99/125 (79%), Positives = 115/125 (92%)
Frame = +2 / +1
Query: 2 SSARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVID 181
S++RDWGFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHVVID
Sbjct: 28 SASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVID 207
Query: 182 KKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDP 361
K+YFRP EVD+LKGDA+KA+KVL WKPKV F+ELV MMVD+D+E+AKKEKVLVDAG+ D
Sbjct: 208 KRYFRPTEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDA 387
Query: 362 KQQP* 376
+QQP*
Sbjct: 388 QQQP* 402
Score = 170 bits (365), Expect = 2e-041
Identities = 80/120 (66%), Positives = 86/120 (71%)
Frame = -3 / -1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PAST TFSFLA S TLGF TFLAL+ASPLRLSTS GR
Sbjct: 398 GCC*ASMYPASTSTFSFLAISTSLSTIILTSSSKLTLGFQPRTFLALLASPLRLSTSVGR 219
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P *PKA +NSSTV +SSVATT*S SCCS++HIAST*SPANPQS
Sbjct: 218 KYLLSITT*SFQFNPT*PKATSKNSSTVCESSVATT*SSAFSCCSINHIAST*SPANPQS 39
>gb|AL379757.1|AL379757 MtBB47C08R1 MtBB Medicago truncatula cDNA clone MtBB47C08 T7, mRNA
sequence
Length = 528
Score = 251 bits (543), Expect = 7e-066
Identities = 99/125 (79%), Positives = 115/125 (92%)
Frame = +2 / +2
Query: 2 SSARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVID 181
S++RDWGFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHVVID
Sbjct: 20 SASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVID 199
Query: 182 KKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDP 361
K+YFRP EVD+LKGDA+KA+KVL WKPKV F+ELV MMVD+D+E+AKKEKVLVDAG+ D
Sbjct: 200 KRYFRPTEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDA 379
Query: 362 KQQP* 376
+QQP*
Sbjct: 380 QQQP* 394
Score = 170 bits (365), Expect = 2e-041
Identities = 80/120 (66%), Positives = 86/120 (71%)
Frame = -3 / -1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PAST TFSFLA S TLGF TFLAL+ASPLRLSTS GR
Sbjct: 390 GCC*ASMYPASTSTFSFLAISTSLSTIILTSSSKLTLGFQPRTFLALLASPLRLSTSVGR 211
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P *PKA +NSSTV +SSVATT*S SCCS++HIAST*SPANPQS
Sbjct: 210 KYLLSITT*SFQFNPT*PKATSKNSSTVCESSVATT*SSAFSCCSINHIAST*SPANPQS 31
>gb|BG450580.1|BG450580 NF036H02DT1F1028 Drought Medicago truncatula cDNA clone NF036H02DT
5', mRNA sequence
Length = 676
Score = 246 bits (531), Expect = 3e-064
Identities = 97/125 (77%), Positives = 113/125 (90%)
Frame = +2 / -2
Query: 2 SSARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVID 181
S++RDWGFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHVVI
Sbjct: 621 SASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVIX 442
Query: 182 KKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDP 361
K+YFRP EVD+LKGDA+KA+KV WKPKV F+ELV MMVD+D+E+AKKEKVLVDAG+ D
Sbjct: 441 KRYFRPTEVDNLKGDASKAKKVXGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDA 262
Query: 362 KQQP* 376
+QQP*
Sbjct: 261 QQQP* 247
Score = 168 bits (362), Expect = 6e-041
Identities = 79/120 (65%), Positives = 85/120 (70%)
Frame = -3 / +2
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PAST TFSFLA S TLGF TFLAL+ASPLRLSTS GR
Sbjct: 251 GCC*ASMYPASTSTFSFLAISTSLSTIILTSSSKLTLGFQPXTFLALLASPLRLSTSVGR 430
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY L +TT*SFQ P *PKA +NSSTV +SSVATT*S SCCS++HIAST*SPANPQS
Sbjct: 431 KYLLXITT*SFQFNPT*PKATSKNSSTVCESSVATT*SSAFSCCSINHIAST*SPANPQS 610
>gb|AL379311.1|AL379311 MtBB44E11R1 MtBB Medicago truncatula cDNA clone MtBB44E11 T7, mRNA
sequence
Length = 521
Score = 238 bits (515), Expect = 5e-062
Identities = 95/119 (79%), Positives = 109/119 (91%)
Frame = +2 / +2
Query: 20 GFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDKKYFRP 199
GFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHVVIDK+YFRP
Sbjct: 2 GFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVIDKRYFRP 181
Query: 200 AEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPKQQP* 376
EVD+LKGDA+KA+KVL WKPKV F+ELV MMVD+D+E+AKKEKVLVDAG+ D +QQP*
Sbjct: 182 TEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDAQQQP* 358
Score = 166 bits (356), Expect = 4e-040
Identities = 78/118 (66%), Positives = 84/118 (71%)
Frame = -3 / -3
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PAST TFSFLA S TLGF TFLAL+ASPLRLSTS GR
Sbjct: 354 GCC*ASMYPASTSTFSFLAISTSLSTIILTSSSKLTLGFQPRTFLALLASPLRLSTSVGR 175
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANP 19
KY LS+TT*SFQ P *PKA +NSSTV +SSVATT*S SCCS++HIAST*SPANP
Sbjct: 174 KYLLSITT*SFQFNPT*PKATSKNSSTVCESSVATT*SSAFSCCSINHIAST*SPANP 1
>gb|AJ845996.1|AJ845996 AJ845996 MtSC4 Medicago truncatula cDNA clone MtC401F04N2, mRNA
sequence
Length = 439
Score = 212 bits (457), Expect = 5e-054
Identities = 82/102 (80%), Positives = 94/102 (92%)
Frame = +2 / +2
Query: 2 SSARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVID 181
S++RDWGFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHVVID
Sbjct: 134 SASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHVVID 313
Query: 182 KKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHD 307
K+YFRP EVD+LKGDA+KA+KVL WKPKV F+ELV MMVD+D
Sbjct: 314 KRYFRPTEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDND 439
Score = 143 bits (307), Expect = 2e-033
Identities = 65/85 (76%), Positives = 71/85 (83%)
Frame = -3 / -2
Query: 267 TLGFHLSTFLALVASPLRLSTSAGRKYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVAT 88
TLGF TFLAL+ASPLRLSTS GRKY LS+TT*SFQ P *PKA +NSSTV +SSVAT
Sbjct: 399 TLGFQPRTFLALLASPLRLSTSVGRKYLLSITT*SFQFNPT*PKATSKNSSTVCESSVAT 220
Query: 87 T*SPGCSCCSMSHIAST*SPANPQS 13
T*S SCCS++HIAST*SPANPQS
Sbjct: 219 T*SSAFSCCSINHIAST*SPANPQS 145
>gb|AL366866.1|AL366866 MtBA10F06R1 MtBA Medicago truncatula cDNA clone MtBA10F06 T7, mRNA
sequence
Length = 524
Score = 147 bits (315), Expect = 2e-034
Identities = 58/75 (77%), Positives = 69/75 (92%)
Frame = +2 / +2
Query: 152 LSWKDHVVIDKKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEK 331
L+WKDHVVIDK+YFRP EVD+LKGDA+KA+KVL WKPKV F+ELV MMVD+D+E+AKKEK
Sbjct: 2 LNWKDHVVIDKRYFRPTEVDNLKGDASKAKKVLGWKPKVSFEELVRMMVDNDVEMAKKEK 181
Query: 332 VLVDAGFRDPKQQP* 376
VLVDAG+ D +QQP*
Sbjct: 182 VLVDAGYIDAQQQP* 226
>gb|CB894781.1|CB894781 EST647573 HOGA Medicago truncatula cDNA clone HOGA-32K20, mRNA
sequence
Length = 802
Score = 125 bits (267), Expect = 8e-028
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = +2 / +3
Query: 2 SSARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHV 172
S++RDWGFAGDYVEAMWLMLQQE+ DYVVATE+SHTVEEFL+ AFGY GL+WKDHV
Sbjct: 630 SASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGLNWKDHV 800
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 551,923,712
Number of Sequences: 392609
Number of extensions: 6794868
Number of successful extensions: 46249
Number of sequences better than 1.0e-020: 8
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19284647085
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)