TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW267841.1|AW267841 EST306119 DSIR Medicago truncatula c... 104 2e-021
gb|BE202769.1|BE202769 EST402791 KV1 Medicago truncatula cD... 104 2e-021
gb|AL389176.1|AL389176 MtBC53C04F1 MtBC Medicago truncatula... 104 2e-021
gb|BI270919.1|BI270919 NF055F09FL1F1079 Developing flower M... 104 2e-021
gb|CX518619.1|CX518619 s13dNF34B02VI013_424071 Virus-Infect... 104 2e-021
gb|CX519727.1|CX519727 s13dNF52A02VI005_443506 Virus-Infect... 104 2e-021
gb|CX541620.1|CX541620 s13dNF48D05GS046_466542 Germinating ... 104 2e-021
gb|DW016702.1|DW016702 EST1225663 MTY Medicago truncatula c... 104 2e-021
emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4... 104 2e-021
gb|BE203437.1|BE203437 EST403459 KV1 Medicago truncatula cD... 101 9e-021
gb|BF003350.1|BF003350 EST431848 KV1 Medicago truncatula cD... 101 9e-021
>gb|AW267841.1|AW267841 EST306119 DSIR Medicago truncatula cDNA clone pDSIR-8A24, mRNA
sequence
Length = 313
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 79 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 237
>gb|BE202769.1|BE202769 EST402791 KV1 Medicago truncatula cDNA clone pKV1-3C2, mRNA
sequence
Length = 553
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 115 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 273
>gb|AL389176.1|AL389176 MtBC53C04F1 MtBC Medicago truncatula cDNA clone MtBC53C04 T3, mRNA
sequence
Length = 492
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 180 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 338
>gb|BI270919.1|BI270919 NF055F09FL1F1079 Developing flower Medicago truncatula cDNA clone
NF055F09FL 5', mRNA sequence
Length = 625
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 116 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 274
>gb|CX518619.1|CX518619 s13dNF34B02VI013_424071 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 384
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 118 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 276
>gb|CX519727.1|CX519727 s13dNF52A02VI005_443506 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 514
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 255 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 413
>gb|CX541620.1|CX541620 s13dNF48D05GS046_466542 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 581
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 291 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 449
>gb|DW016702.1|DW016702 EST1225663 MTY Medicago truncatula cDNA clone MTYAK53, mRNA
sequence
Length = 843
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 383 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 541
>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
Length = 243542
Score = 104 bits (221), Expect = 2e-021
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / -1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF *T
Sbjct: 153509 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR*T 153351
>gb|BE203437.1|BE203437 EST403459 KV1 Medicago truncatula cDNA clone pKV1-5D7, mRNA
sequence
Length = 482
Score = 101 bits (216), Expect = 9e-021
Identities = 37/53 (69%), Positives = 46/53 (86%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF T
Sbjct: 119 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFRST 277
>gb|BF003350.1|BF003350 EST431848 KV1 Medicago truncatula cDNA clone pKV1-5D7, mRNA
sequence
Length = 535
Score = 101 bits (216), Expect = 9e-021
Identities = 37/53 (69%), Positives = 46/53 (86%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*T 490
+WGQNWQSN L+GQALSF+VTTSDG++V+S+N AP GW FGQT++GAQF T
Sbjct: 171 NWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFRST 329
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 533,941,827
Number of Sequences: 392609
Number of extensions: 6501610
Number of successful extensions: 43472
Number of sequences better than 1.0e-020: 12
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 21175298760
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)