TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA989587.1|CA989587 EST643095 GLSD Medicago truncatula c... 126 2e-028
gb|BF004313.1|BF004313 EST432811 KV1 Medicago truncatula cD... 123 2e-027
gb|AJ498887.1|AJ498887 AJ498887 MTPOSE Medicago truncatula ... 123 2e-027
gb|AC144484.5| Medicago truncatula clone mth2-30o16, comple... 90 2e-021
gb|AC152818.17| Medicago truncatula clone mth2-85g12, compl... 90 2e-021
>gb|CA989587.1|CA989587 EST643095 GLSD Medicago truncatula cDNA clone pGLSD-42G5, mRNA
sequence
Length = 571
Score = 126 bits (269), Expect = 2e-028
Identities = 47/61 (77%), Positives = 56/61 (91%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VF+VSG KFLKLN+GTWHAGPLFK+D +DFYNLELSNTNVVDHTTH+FKK +G+TF + +
Sbjct: 153 VFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVVDHTTHNFKKDNGVTFTINE 332
Query: 185 * 187
*
Sbjct: 333 * 335
>gb|BF004313.1|BF004313 EST432811 KV1 Medicago truncatula cDNA clone pKV1-17C18, mRNA
sequence
Length = 528
Score = 123 bits (263), Expect = 2e-027
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +2 / +2
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITF 172
VF+VSG KFLKLN+GTWHAGPLFK+D +DFYNLELSNTNVVDHTTH+FKK +G+TF
Sbjct: 359 VFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVVDHTTHNFKKDNGVTF 526
>gb|AJ498887.1|AJ498887 AJ498887 MTPOSE Medicago truncatula cDNA clone mt--acc955209g07,
mRNA sequence
Length = 624
Score = 123 bits (263), Expect = 2e-027
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITF 172
VF+VSG KFLKLN+GTWHAGPLFK+D +DFYNLELSNTNVVDHTTH+FKK +G+TF
Sbjct: 456 VFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVVDHTTHNFKKDNGVTF 623
>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence
Length = 121144
Score = 90.0 bits (190), Expect(2) = 2e-021
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNV 124
VF+VSG KFLKLN+GTWHAGPLFK+D +DFYNLELSNTNV
Sbjct: 52225 VFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNV 52106
Score = 40.9 bits (83), Expect(2) = 2e-021
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2 / -2
Query: 122 VVDHTTHHFKKHDGITFVVED* 187
VVDHTTH+FKK +G+TF + +*
Sbjct: 51936 VVDHTTHNFKKDNGVTFTINE* 51871
>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence
Length = 142154
Score = 90.0 bits (190), Expect(2) = 2e-021
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNV 124
VF+VSG KFLKLN+GTWHAGPLFK+D +DFYNLELSNTNV
Sbjct: 52229 VFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNV 52110
Score = 40.9 bits (83), Expect(2) = 2e-021
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2 / -2
Query: 122 VVDHTTHHFKKHDGITFVVED* 187
VVDHTTH+FKK +G+TF + +*
Sbjct: 51940 VVDHTTHNFKKDNGVTFTINE* 51875
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 441,321,422
Number of Sequences: 392609
Number of extensions: 6176209
Number of successful extensions: 84678
Number of sequences better than 1.0e-020: 5
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 10907265018
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)