TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG588186.1|BG588186 EST489995 MHRP- Medicago truncatula ... 185 4e-046
gb|BM779887.1|BM779887 EST590463 KV2 Medicago truncatula cD... 152 5e-036
gb|BM779993.1|BM779993 EST590569 KV2 Medicago truncatula cD... 152 5e-036
gb|CA921503.1|CA921503 EST639221 MTUS Medicago truncatula c... 152 5e-036
gb|AL379245.1|AL379245 MtBB44B11F1 MtBB Medicago truncatula... 150 2e-035
gb|AJ388754.1|AJ388754 AJ388754 Medicago truncatula R108 Me... 133 2e-030
emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1... 78 9e-029
gb|AW683463.1|AW683463 NF012E11LF1F1086 Developing leaf Med... 79 1e-025
gb|CX527190.1|CX527190 s13dNF40H09AT080_514892 Aphid-Infect... 78 3e-025
gb|CX524204.1|CX524204 s13dNF04B03AT025_447752 Aphid-Infect... 78 3e-025
gb|BF648512.1|BF648512 NF048E01EC1F1005 Elicited cell cultu... 78 3e-025
gb|BF641734.1|BF641734 NF067D05IN1F1045 Insect herbivory Me... 77 8e-025
gb|BI272912.1|BI272912 NF091E12FL1F1098 Developing flower M... 113 3e-024
emb|CR324361.1| mte1-51B7RM1 BAC end, cultivar Jemalong A17... 86 4e-024
gb|AL366684.1|AL366684 MtBA09E08F1 MtBA Medicago truncatula... 68 4e-023
emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4... 67 2e-021
gb|BI311609.1|BI311609 EST5313359 GESD Medicago truncatula ... 67 2e-021
>gb|BG588186.1|BG588186 EST489995 MHRP- Medicago truncatula cDNA clone pMHRP-41J5, mRNA
sequence
Length = 723
Score = 185 bits (399), Expect = 4e-046
Identities = 71/100 (71%), Positives = 84/100 (84%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG +YP+RIHHR SSLPS+A HP +I CS GF+ + + NPN+LVGAVVGGPD
Sbjct: 209 YMVGYGPRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQH 388
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL*AP 295
DRFPD+R+D+E SEPATY+NAPLVG LAYLAHS+GQL* P
Sbjct: 389 DRFPDKRSDYEQSEPATYVNAPLVGTLAYLAHSFGQL*KP 508
Score = 126 bits (270), Expect = 3e-028
Identities = 60/99 (60%), Positives = 65/99 (65%)
Frame = +2 / -1
Query: 296 GA*SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPA 475
G *S P ECAR*AS PTSGAL *VAGS+CS S R SGNLSC SGPPTTAPT LGL
Sbjct: 507 GF*S*PNECAR*ASVPTSGALT*VAGSDCS*SDRLSGNLSC*SGPPTTAPTRMLGLGDCE 328
Query: 476 YSAVNPCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
+ P E I GC A +G D+ W + GYL P PTM
Sbjct: 327 LITLKPAEHWIFPGCTAIEGRDDPLWCILCGYLGPYPTM 211
>gb|BM779887.1|BM779887 EST590463 KV2 Medicago truncatula cDNA clone pKV2-53G18, mRNA
sequence
Length = 795
Score = 152 bits (326), Expect = 5e-036
Identities = 56/91 (61%), Positives = 71/91 (78%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+G KYP+ IHHR SSLPS+ P +I C+ GF L++G NPN+LVGA+VGGPD
Sbjct: 601 YMVGFGEKYPKHIHHRGSSLPSIRVQPQQISCNNGFQYLHSGSPNPNVLVGAIVGGPDSS 422
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D+RN+++ SEPATYINAP VGALA+ +
Sbjct: 421 DNFSDDRNNYQQSEPATYINAPFVGALAFFS 329
>gb|BM779993.1|BM779993 EST590569 KV2 Medicago truncatula cDNA clone pKV2-53L17, mRNA
sequence
Length = 730
Score = 152 bits (326), Expect = 5e-036
Identities = 56/91 (61%), Positives = 71/91 (78%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+G KYP+ IHHR SSLPS+ P +I C+ GF L++G NPN+LVGA+VGGPD
Sbjct: 600 YMVGFGEKYPKHIHHRGSSLPSIRVQPQQISCNNGFQYLHSGSPNPNVLVGAIVGGPDSS 421
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D+RN+++ SEPATYINAP VGALA+ +
Sbjct: 420 DNFSDDRNNYQQSEPATYINAPFVGALAFFS 328
>gb|CA921503.1|CA921503 EST639221 MTUS Medicago truncatula cDNA clone MTUS-41B6, mRNA
sequence
Length = 838
Score = 152 bits (326), Expect = 5e-036
Identities = 56/91 (61%), Positives = 71/91 (78%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+G KYP+ IHHR SSLPS+ P +I C+ GF L++G NPN+LVGA+VGGPD
Sbjct: 597 YMVGFGEKYPKHIHHRGSSLPSIRVQPQQISCNNGFQYLHSGSPNPNVLVGAIVGGPDSS 418
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D F D+RN+++ SEPATYINAP VGALA+ +
Sbjct: 417 DNFSDDRNNYQQSEPATYINAPFVGALAFFS 325
>gb|AL379245.1|AL379245 MtBB44B11F1 MtBB Medicago truncatula cDNA clone MtBB44B11 T3, mRNA
sequence
Length = 473
Score = 150 bits (322), Expect = 2e-035
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+G KYP+ IHHR SSLPS+ P +I C+ GF L++G NPN+LVGA+VGGPD
Sbjct: 209 YMVGFGEKYPKHIHHRGSSLPSIRVQPQQISCNNGFQYLHSGSPNPNVLVGAIVGGPDSS 388
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALA 331
D F D+RN+++ SEPATYINAP VGALA
Sbjct: 389 DNFSDDRNNYQQSEPATYINAPFVGALA 472
>gb|AJ388754.1|AJ388754 AJ388754 Medicago truncatula R108 Medicago truncatula cDNA clone
MtNo117 similar to endo-1,4-beta-glucanase, mRNA
sequence
Length = 601
Score = 133 bits (286), Expect = 2e-030
Identities = 53/89 (59%), Positives = 62/89 (69%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG YP+RIHHR SSLPS+ HP +I C +G + NPN+LVGAVVGGP
Sbjct: 177 YMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAVVGGPGED 356
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D + D+R D+ SEP TYINAP VG LAY
Sbjct: 357 DVYVDDRADYRKSEPTTYINAPFVGGLAY 443
>emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1-41h18, COMPLETE SEQUENCE
Length = 103321
Score = 78.0 bits (164), Expect(2) = 9e-029
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = -1 / +3
Query: 477 YAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
Y+ NPN+ VGA+VGGPD D+F D R+D+ HSEP TY+NA +G++A L
Sbjct: 41928 YSSNPNPNIHVGAIVGGPDFNDQFNDARSDYSHSEPTTYMNAAFIGSVAAL 42080
Score = 69.8 bits (146), Expect(2) = 3e-025
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = -1 / +3
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
NPN+ VGA+VGGP+ D++ D R+D+ H+EP TY+NA VG++A L
Sbjct: 51837 NPNIHVGAIVGGPNSNDQYNDARSDYSHAEPTTYMNAAFVGSVAAL 51974
Score = 69.8 bits (146), Expect(2) = 9e-029
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFT 484
YMVGYG+KYP+++HHR SS+PS+ H ++GC+ G+T
Sbjct: 41808 YMVGYGSKYPKQLHHRGSSIPSIKVHQTKVGCNDGYT 41918
Score = 66.1 bits (138), Expect(2) = 3e-025
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQG 490
YMVGYG+KYP+++HHR SS+PS+ H ++GC+ G
Sbjct: 51702 YMVGYGSKYPKQLHHRGSSIPSIKVHQTKVGCNDG 51806
>gb|AW683463.1|AW683463 NF012E11LF1F1086 Developing leaf Medicago truncatula cDNA clone
NF012E11LF 5', mRNA sequence
Length = 657
Score = 79.4 bits (167), Expect(2) = 1e-025
Identities = 32/55 (58%), Positives = 41/55 (74%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
+N N+L GA+VGGPD D F DER ++E +EPATY NAPL+G LA L+ +G L*
Sbjct: 443 SNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHGWL* 607
Score = 57.9 bits (120), Expect(2) = 1e-025
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG YP+R+HHR SS+ S+ A+P + C+ G+ ++
Sbjct: 311 YMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFS 433
>gb|CX527190.1|CX527190 s13dNF40H09AT080_514892 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 602
Score = 78.0 bits (164), Expect(2) = 3e-025
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
+N N+L GA+VGGPD D F DER ++E +EPATY NAPL+G LA L+ +G
Sbjct: 149 SNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHG 304
Score = 57.9 bits (120), Expect(2) = 3e-025
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG YP+R+HHR SS+ S+ A+P + C+ G+ ++
Sbjct: 17 YMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFS 139
>gb|CX524204.1|CX524204 s13dNF04B03AT025_447752 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 530
Score = 78.0 bits (164), Expect(2) = 3e-025
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = -1 / +2
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
+N N+L GA+VGGPD D F DER ++E +EPATY NAPL+G LA L+ +G
Sbjct: 266 SNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHG 421
Score = 57.9 bits (120), Expect(2) = 3e-025
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG YP+R+HHR SS+ S+ A+P + C+ G+ ++
Sbjct: 134 YMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFS 256
>gb|BF648512.1|BF648512 NF048E01EC1F1005 Elicited cell culture Medicago truncatula cDNA
clone NF048E01EC 5', mRNA sequence
Length = 486
Score = 78.0 bits (164), Expect(2) = 3e-025
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = -1 / +3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
+N N+L GA+VGGPD D F DER ++E +EPATY NAPL+G LA L+ +G
Sbjct: 303 SNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHG 458
Score = 57.9 bits (120), Expect(2) = 3e-025
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG YP+R+HHR SS+ S+ A+P + C+ G+ ++
Sbjct: 171 YMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFS 293
>gb|BF641734.1|BF641734 NF067D05IN1F1045 Insect herbivory Medicago truncatula cDNA clone
NF067D05IN 5', mRNA sequence
Length = 679
Score = 76.7 bits (161), Expect(2) = 8e-025
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = -1 / +3
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYG 310
+N N+L GA+VGGPD D F DER ++E +EPATY NAPL+G LA L +G
Sbjct: 456 SNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLNGGHG 611
Score = 57.9 bits (120), Expect(2) = 8e-025
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
YMVGYG YP+R+HHR SS+ S+ A+P + C+ G+ ++
Sbjct: 324 YMVGYGNNYPQRVHHRGSSIVSIKANPNFVSCNGGYATWFS 446
>gb|BI272912.1|BI272912 NF091E12FL1F1098 Developing flower Medicago truncatula cDNA clone
NF091E12FL 5', mRNA sequence
Length = 702
Score = 113 bits (241), Expect = 3e-024
Identities = 44/82 (53%), Positives = 54/82 (65%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG KYP++IHHR S+LPS+ HP +GC G + N N+L+GA+VGGP
Sbjct: 332 YMVGYGQKYPQKIHHRGSTLPSLDVHPKHMGCRDGDKYFQSSTPNINVLIGAIVGGPAND 511
Query: 414 DRFPDERNDHEHSEPATYINAP 349
D F D R + SEP TYINAP
Sbjct: 512 DSFQDSRYNVSQSEPTTYINAP 577
>emb|CR324361.1| mte1-51B7RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 611
Score = 86.3 bits (182), Expect(2) = 4e-024
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = -1 / +2
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLA 322
NPN+LVGA+VGGP+ D FPD+R D+ HSEPATYIN +VG LAY A
Sbjct: 101 NPNILVGAIVGGPNQNDGFPDDRGDYSHSEPATYINGGIVGPLAYFA 241
Score = 46.0 bits (94), Expect(2) = 4e-024
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -1 / +2
Query: 558 IHHRASSLPSVAAHPARIGCSQGFTALY 475
IHHR SSLPS++ HP IGC GF +
Sbjct: 2 IHHRGSSLPSLSVHPQTIGCDGGFNPFF 85
>gb|AL366684.1|AL366684 MtBA09E08F1 MtBA Medicago truncatula cDNA clone MtBA09E08 T3, mRNA
sequence
Length = 480
Score = 68.4 bits (143), Expect(2) = 4e-023
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = -1 / +3
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL 304
NPN++ G +VGGPD D + D+R+++E SEP +APLVG LA L SYG +
Sbjct: 228 NPNVIHGGLVGGPDRNDDYTDDRSNYEQSEPTLSGSAPLVGILAKLQSSYGNI 386
Score = 60.6 bits (126), Expect(2) = 4e-023
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
Y++GYG KYP +HHR SS+ SV + + +GC+QGF A Y
Sbjct: 93 YLIGYGPKYPIHVHHRGSSIASVFSLHSEVGCAQGFDAWY 212
>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
Length = 194592
Score = 67.0 bits (140), Expect(2) = 2e-021
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = -1 / +1
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAH 319
NPN+LVGA+VGGPD QD F D+RN+ +E TY APLV A H
Sbjct: 99670 NPNVLVGALVGGPDWQDNFEDKRNNFMQTEACTYNTAPLVALFAKFLH 99813
Score = 56.1 bits (116), Expect(2) = 2e-021
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
Y+VGYG YP+R+HHR +S+ S + IGC+QG+ Y+
Sbjct: 99535 YLVGYGPSYPKRVHHRGASIMSYKENKGFIGCTQGYDNWYS 99657
>gb|BI311609.1|BI311609 EST5313359 GESD Medicago truncatula cDNA clone pGESD13I10 5' end,
mRNA sequence
Length = 550
Score = 67.0 bits (140), Expect(2) = 2e-021
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = -1 / +3
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAH 319
NPN+LVGA+VGGPD QD F D+RN+ +E TY APLV A H
Sbjct: 138 NPNVLVGALVGGPDWQDNFEDKRNNFMQTEACTYNTAPLVALFAKFLH 281
Score = 56.1 bits (116), Expect(2) = 2e-021
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYA 472
Y+VGYG YP+R+HHR +S+ S + IGC+QG+ Y+
Sbjct: 3 YLVGYGPSYPKRVHHRGASIMSYKENKGFIGCTQGYDNWYS 125
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 480,298,295
Number of Sequences: 392609
Number of extensions: 5442939
Number of successful extensions: 51032
Number of sequences better than 1.0e-020: 21
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 18206791776
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)