TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC140720.21| Medicago truncatula clone mth2-17l10, compl... 117 6e-040
emb|AJ864710.1| Medicago truncatula mRNA for alpha-6-galact... 117 6e-040
>gb|AC140720.21| Medicago truncatula clone mth2-17l10, complete sequence
Length = 122940
Score = 117 bits (251), Expect(2) = 6e-040
Identities = 44/69 (63%), Positives = 51/69 (73%)
Frame = -2 / +3
Query: 375 RRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQP 196
RRPF+THFTGCQPC+G N Y+ D C GM RALNFAD+QVLR +GF H + L V P
Sbjct: 84372 RRPFITHFTGCQPCNGHHNPMYAADDCWNGMERALNFADNQVLRKFGFIHPNLLDKSVSP 84551
Query: 195 LPFDYPAKA 169
LPF YPAK+
Sbjct: 84552 LPFGYPAKS 84578
Score = 103 bits (219), Expect(2) = 3e-035
Identities = 40/66 (60%), Positives = 46/66 (69%)
Frame = -2 / +3
Query: 375 RRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQP 196
RRPFV HFTGCQPCSG N Y GD C + M RALNFAD+QVLR YGF + ++ V
Sbjct: 79809 RRPFVKHFTGCQPCSGDHNPSYKGDVCWKEMERALNFADNQVLRNYGFVRKNLMTSSVYE 79988
Query: 195 LPFDYP 178
+PF YP
Sbjct: 79989 VPFGYP 80006
Score = 68.0 bits (142), Expect(2) = 6e-040
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = -2 / +3
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERR 493
DDQ+AL Y++ +W K+++E+ YYFEGYWMEI M ++Y+ +E+R
Sbjct: 84123 DDQTALAYLIAMGEDKWTKKIYMENEYYFEGYWMEISKMYDKMGKKYDEIEKR 84281
Score = 66.6 bits (139), Expect(2) = 3e-035
Identities = 22/53 (41%), Positives = 37/53 (69%)
Frame = -2 / +3
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERR 493
DDQS+L+Y+L ++ +W K FLE GY EGYW+ +G+L + +Y+ +E++
Sbjct: 79566 DDQSSLIYLLSRQRRKWGAKTFLEEGYDLEGYWIATMGKLEGIQNKYDEIEKK 79724
>emb|AJ864710.1| Medicago truncatula mRNA for alpha-6-galactosyltransferase (x34.3
gene)
Length = 1317
Score = 117 bits (251), Expect(2) = 6e-040
Identities = 44/69 (63%), Positives = 51/69 (73%)
Frame = -2 / +1
Query: 375 RRPFVTHFTGCQPCSGQRNEHYSGDSCDQGMRRALNFADDQVLRAYGFRHASSLSDDVQP 196
RRPF+THFTGCQPC+G N Y+ D C GM RALNFAD+QVLR +GF H + L V P
Sbjct: 1105 RRPFITHFTGCQPCNGHHNPMYAADDCWNGMERALNFADNQVLRKFGFIHPNLLDKSVSP 1284
Query: 195 LPFDYPAKA 169
LPF YPAK+
Sbjct: 1285 LPFGYPAKS 1311
Score = 68.0 bits (142), Expect(2) = 6e-040
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = -2 / +1
Query: 651 DDQSALVYMLLQEGSRWRDKVFLESGYYFEGYWMEIVGRLANMTERYEAMERR 493
DDQ+AL Y++ +W K+++E+ YYFEGYWMEI M ++Y+ +E+R
Sbjct: 856 DDQTALAYLIAMGEDKWTKKIYMENEYYFEGYWMEISKMYDKMGKKYDEIEKR 1014
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 514,968,834
Number of Sequences: 392609
Number of extensions: 5725317
Number of successful extensions: 29216
Number of sequences better than 1.0e-020: 2
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23822211105
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)