TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG583002.1|BG583002 EST484741 GVN Medicago truncatula cD... 131 2e-029
gb|AJ503740.1|AJ503740 AJ503740 MTAMP Medicago truncatula c... 131 2e-029
gb|AJ498503.1|AJ498503 AJ498503 MTPOSE Medicago truncatula ... 131 2e-029
gb|CA920113.1|CA920113 EST637831 MTUS Medicago truncatula c... 131 2e-029
gb|CF069733.1|CF069733 EST670454 MTUS Medicago truncatula c... 127 2e-028
gb|AW775181.1|AW775181 EST331903 GVN Medicago truncatula cD... 123 4e-027
emb|CR327435.1| mte1-56G9RM1 BAC end, cultivar Jemalong A17... 117 2e-025
gb|BQ149821.1|BQ149821 NF006C04FL1F1034 Developing flower M... 86 3e-025
gb|BF520999.1|BF520999 EST458472 DSIL Medicago truncatula c... 106 4e-022
gb|BF636425.1|BF636425 NF090C04DT1F1033 Drought Medicago tr... 106 4e-022
gb|BI269097.1|BI269097 NF007D11IR1F1093 Irradiated Medicago... 106 4e-022
gb|BI271377.1|BI271377 NF050B12FL1F1101 Developing flower M... 106 4e-022
gb|BQ148774.1|BQ148774 NF082D08FL1F1073 Developing flower M... 106 4e-022
gb|BQ154468.1|BQ154468 NF069H12IR1F1104 Irradiated Medicago... 106 4e-022
gb|BQ156553.1|BQ156553 NF094A11IR1F1085 Irradiated Medicago... 106 4e-022
gb|CA857782.1|CA857782 EST635037 GLSD Medicago truncatula c... 106 4e-022
gb|CA857795.1|CA857795 EST635050 GLSD Medicago truncatula c... 106 4e-022
gb|CX540508.1|CX540508 s13dNF50B08GS061_464292 Germinating ... 106 4e-022
gb|AC158501.3| Medicago truncatula chromosome 2 BAC clone m... 106 4e-022
>gb|BG583002.1|BG583002 EST484741 GVN Medicago truncatula cDNA clone pGVN-71G6 5' end, mRNA
sequence
Length = 581
Score = 131 bits (280), Expect = 2e-029
Identities = 49/69 (71%), Positives = 51/69 (73%)
Frame = +2 / +2
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMT 478
L VS AGS FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 41 LEVSFAGSDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMK 220
Query: 479 TGHGNRTRP 505
G P
Sbjct: 221 NSKGKGKCP 247
>gb|AJ503740.1|AJ503740 AJ503740 MTAMP Medicago truncatula cDNA clone mtgmadc120037g02,
mRNA sequence
Length = 463
Score = 131 bits (280), Expect = 2e-029
Identities = 49/69 (71%), Positives = 51/69 (73%)
Frame = +2 / +3
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMT 478
L VS AGS FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 60 LEVSFAGSDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMK 239
Query: 479 TGHGNRTRP 505
G P
Sbjct: 240 NSKGKGKCP 266
>gb|AJ498503.1|AJ498503 AJ498503 MTPOSE Medicago truncatula cDNA clone mt--acc955205e06,
mRNA sequence
Length = 485
Score = 131 bits (280), Expect = 2e-029
Identities = 49/69 (71%), Positives = 51/69 (73%)
Frame = +2 / +3
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMT 478
L VS AGS FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 33 LEVSFAGSDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMK 212
Query: 479 TGHGNRTRP 505
G P
Sbjct: 213 NSKGKGKCP 239
>gb|CA920113.1|CA920113 EST637831 MTUS Medicago truncatula cDNA clone MTUS-23F10, mRNA
sequence
Length = 566
Score = 131 bits (280), Expect = 2e-029
Identities = 49/69 (71%), Positives = 51/69 (73%)
Frame = +2 / -2
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMT 478
L VS AGS FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 514 LEVSFAGSDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMK 335
Query: 479 TGHGNRTRP 505
G P
Sbjct: 334 NSKGKGKCP 308
>gb|CF069733.1|CF069733 EST670454 MTUS Medicago truncatula cDNA clone MTUS-23F10, mRNA
sequence
Length = 560
Score = 127 bits (272), Expect = 2e-028
Identities = 47/66 (71%), Positives = 49/66 (74%)
Frame = +2 / +2
Query: 308 SMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGH 487
S AGS FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 29 SFAGSDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSK 208
Query: 488 GNRTRP 505
G P
Sbjct: 209 GKGKCP 226
>gb|AW775181.1|AW775181 EST331903 GVN Medicago truncatula cDNA clone pGVN-30A1, mRNA
sequence
Length = 493
Score = 123 bits (263), Expect = 4e-027
Identities = 47/69 (68%), Positives = 48/69 (69%)
Frame = +2 / +1
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMT 478
L VS AGS FC+ KCAVRCSKAS D CLK CGICC CNCVPS T GNK ECPCYRDM
Sbjct: 67 LEVSFAGSDFCNSKCAVRCSKASIQDRCLKLCGICCEKCNCVPSATYGNKHECPCYRDMK 246
Query: 479 TGHGNRTRP 505
G P
Sbjct: 247 NSKGKGKCP 273
>emb|CR327435.1| mte1-56G9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 692
Score = 117 bits (251), Expect = 2e-025
Identities = 42/56 (75%), Positives = 45/56 (80%)
Frame = +2 / -2
Query: 308 SMAGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDM 475
S+ FC+ KCAVRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM
Sbjct: 175 SVVDLDFCNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDM 8
>gb|BQ149821.1|BQ149821 NF006C04FL1F1034 Developing flower Medicago truncatula cDNA clone
NF006C04FL 5', mRNA sequence
Length = 790
Score = 86.3 bits (182), Expect(2) = 3e-025
Identities = 30/43 (69%), Positives = 31/43 (72%)
Frame = +2 / +1
Query: 377 DCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
D LK+CGICC CNCVPSGT GNKDECPCYRDM G P
Sbjct: 235 DALKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGKGKCP 363
Score = 50.6 bits (104), Expect(2) = 3e-025
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 299 LRVSMAGSGFCDGKCAVRCSKASRHDDC 382
L VS AGS FC+ KCAVRCSKAS D C
Sbjct: 156 LEVSFAGSDFCNSKCAVRCSKASIQDRC 239
>gb|BF520999.1|BF520999 EST458472 DSIL Medicago truncatula cDNA clone pDSIL-41G1, mRNA
sequence
Length = 516
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +1
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 181 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 360
>gb|BF636425.1|BF636425 NF090C04DT1F1033 Drought Medicago truncatula cDNA clone NF090C04DT
5', mRNA sequence
Length = 562
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +1
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 187 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 366
>gb|BI269097.1|BI269097 NF007D11IR1F1093 Irradiated Medicago truncatula cDNA clone
NF007D11IR 5', mRNA sequence
Length = 696
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +1
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 148 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 327
>gb|BI271377.1|BI271377 NF050B12FL1F1101 Developing flower Medicago truncatula cDNA clone
NF050B12FL 5', mRNA sequence
Length = 597
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +2
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 200 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 379
>gb|BQ148774.1|BQ148774 NF082D08FL1F1073 Developing flower Medicago truncatula cDNA clone
NF082D08FL 5', mRNA sequence
Length = 569
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +2
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 65 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 244
>gb|BQ154468.1|BQ154468 NF069H12IR1F1104 Irradiated Medicago truncatula cDNA clone
NF069H12IR 5', mRNA sequence
Length = 667
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +2
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 215 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 394
>gb|BQ156553.1|BQ156553 NF094A11IR1F1085 Irradiated Medicago truncatula cDNA clone
NF094A11IR 5', mRNA sequence
Length = 660
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +2
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 200 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 379
>gb|CA857782.1|CA857782 EST635037 GLSD Medicago truncatula cDNA clone pGLSD-26E21, mRNA
sequence
Length = 640
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +1
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 199 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 378
>gb|CA857795.1|CA857795 EST635050 GLSD Medicago truncatula cDNA clone pGLSD-26I3, mRNA
sequence
Length = 604
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +2
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 203 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 382
>gb|CX540508.1|CX540508 s13dNF50B08GS061_464292 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 523
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +3
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 102 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 281
>gb|AC158501.3| Medicago truncatula chromosome 2 BAC clone mth2-70b22, complete
sequence
Length = 108930
Score = 106 bits (227), Expect = 4e-022
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2 / +3
Query: 326 FCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
FC KC RCSKA D C+K+CGICC C CVPSGT GNK ECPCYRDM G P
Sbjct: 54582 FCSSKCGQRCSKAGMKDRCMKFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 54761
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 798,237,280
Number of Sequences: 392609
Number of extensions: 11365930
Number of successful extensions: 79175
Number of sequences better than 1.0e-020: 26
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 29402295624
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)