TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA921351.1|CA921351 EST639069 MTUS Medicago truncatula c... 103 4e-021
gb|AC150777.2| Medicago truncatula chromosome 7 BAC clone m... 103 4e-021
gb|AC155888.2| Medicago truncatula chromosome 7 BAC clone m... 103 4e-021
emb|CR329887.1| mte1-59O14FM1 BAC end, cultivar Jemalong A1... 102 7e-021
>gb|CA921351.1|CA921351 EST639069 MTUS Medicago truncatula cDNA clone MTUS-39C12, mRNA
sequence
Length = 477
Score = 103 bits (219), Expect = 4e-021
Identities = 34/56 (60%), Positives = 46/56 (82%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
+VL HP++GGF THCGWNSTVE+V GVPM+C P +GDQ N RY+C++W++G E+
Sbjct: 390 QVLNHPSIGGFLTHCGWNSTVESVLAGVPMLCWPFYGDQPINCRYICNIWEIGIEI 223
>gb|AC150777.2| Medicago truncatula chromosome 7 BAC clone mte1-51d4, complete
sequence
Length = 98197
Score = 103 bits (219), Expect = 4e-021
Identities = 34/56 (60%), Positives = 46/56 (82%)
Frame = -2 / +2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
+VL HP++GGF THCGWNSTVE+V GVPM+C P +GDQ N RY+C++W++G E+
Sbjct: 8453 QVLNHPSIGGFLTHCGWNSTVESVLAGVPMLCWPFYGDQPINCRYICNIWEIGIEI 8620
>gb|AC155888.2| Medicago truncatula chromosome 7 BAC clone mth2-30a12, complete
sequence
Length = 104265
Score = 103 bits (219), Expect = 4e-021
Identities = 34/56 (60%), Positives = 46/56 (82%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
+VL HP++GGF THCGWNSTVE+V GVPM+C P +GDQ N RY+C++W++G E+
Sbjct: 6748 QVLNHPSIGGFLTHCGWNSTVESVLAGVPMLCWPFYGDQPINCRYICNIWEIGIEI 6581
>emb|CR329887.1| mte1-59O14FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 671
Score = 102 bits (217), Expect = 7e-021
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = -2 / -2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTE 529
EVLAH AVGGF++HCGWNST+E++ EGVP+IC P GDQ NAR + HVWKVG E
Sbjct: 232 EVLAHKAVGGFWSHCGWNSTLESLCEGVPIICQPSFGDQRVNARLLSHVWKVGLE 68
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 519,459,660
Number of Sequences: 392609
Number of extensions: 6341026
Number of successful extensions: 93627
Number of sequences better than 1.0e-020: 5
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 22183646320
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)