TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL379969.1|AL379969 MtBB48E05R1 MtBB Medicago truncatula... 69 1e-020
>gb|AL379969.1|AL379969 MtBB48E05R1 MtBB Medicago truncatula cDNA clone MtBB48E05 T7, mRNA
sequence
Length = 488
Score = 69.3 bits (145), Expect(2) = 1e-020
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -3 / +2
Query: 727 SNPFYLEVLIEFEDGDGDLSAVHLMEAGCGTWTPMVQNWGALW 599
S PF+L +L+EFEDGDGD+S++H+ EAG W M WGA W
Sbjct: 80 STPFWLSLLVEFEDGDGDISSMHIQEAGSSEWLQMNHLWGANW 208
Score = 51.9 bits (107), Expect(2) = 1e-020
Identities = 18/40 (45%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 571 LKAPFSLRLTSDSGRVLVANNVIPAGWNPGATYRSLVNYS 452
L+ PFS++L++ +G+ L A +VIP+ W+P +TY S +N+S
Sbjct: 227 LRGPFSVKLSTSTGKSLTAKDVIPSHWSPKSTYTSRLNFS 346
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 541,334,685
Number of Sequences: 392609
Number of extensions: 6351705
Number of successful extensions: 36975
Number of sequences better than 1.0e-020: 1
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23696167660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)