TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE240280.1|BE240280 EST404329 MHRP- Medicago truncatula ... 180 1e-070
gb|BE240281.1|BE240281 EST404330 MHRP- Medicago truncatula ... 180 1e-069
gb|BF004228.1|BF004228 EST432726 KV1 Medicago truncatula cD... 170 6e-064
gb|DW018221.1|DW018221 EST1227182 MTY Medicago truncatula c... 134 1e-049
gb|AC161033.18| Medicago truncatula clone mth2-57g13, compl... 55 2e-049
gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-... 55 8e-049
gb|AC152158.10| Medicago truncatula clone mth2-139g10, comp... 55 2e-048
gb|BG647719.1|BG647719 EST509338 HOGA Medicago truncatula c... 130 8e-041
gb|AC137508.11| Medicago truncatula clone mth2-17m13, WORKI... 59 2e-028
gb|CX529710.1|CX529710 s13dNF50H03MJ029_245466 Methyl Jasmo... 125 2e-027
gb|BG588366.1|BG588366 EST490175 MHRP- Medicago truncatula ... 83 9e-025
gb|BG647164.1|BG647164 EST508783 HOGA Medicago truncatula c... 108 3e-022
>gb|BE240280.1|BE240280 EST404329 MHRP- Medicago truncatula cDNA clone pMHRP-43D11, mRNA
sequence
Length = 556
Score = 180 bits (387), Expect(2) = 1e-070
Identities = 72/130 (55%), Positives = 90/130 (69%)
Frame = -2 / +2
Query: 931 DRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETCLXXXXXX 752
+R+ GG+DVK +ELS +EA +GC+KT+TFQT + C CGG+GVPPGT PETC
Sbjct: 8 NRNIGGQDVKTFVELSFMEAVRGCAKTITFQTDMICNTCGGSGVPPGTRPETCKRCKGSG 187
Query: 751 XXXXXXXXFRMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKV 572
FRM++TC C GSGK VK FCK+C+G KV KSV+LDI+ G DN +TIKV
Sbjct: 188 VTSVQAGIFRMETTCGACRGSGKIVKSFCKSCKGAKVNRATKSVKLDIMAGIDNNETIKV 367
Query: 571 VRSGGEDPDG 542
RSGG DP+G
Sbjct: 368 YRSGGADPEG 397
Score = 109 bits (233), Expect(2) = 1e-070
Identities = 44/59 (74%), Positives = 51/59 (86%)
Frame = -2 / +2
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVL 386
G + RPGDLYVT++VREDPVFRRE DIHVD VL++TQAILGGT+QVPTL+GDVVL
Sbjct: 380 GADPEGDRPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTGDVVL 556
Score = 100 bits (212), Expect(2) = 1e-030
Identities = 47/114 (41%), Positives = 57/114 (50%)
Frame = +3 / -2
Query: 579 MVSSLSEPGSMSRRTDFLPGTTLFPLHALQNSFTVFPEPPHFVQVDCILNGPEKKNINPE 758
MVS LS P +S TD + T PLH LQ T+ P+P H V ILN P ++ P+
Sbjct: 360 MVSLLSIPAIISNLTDLVALLTFAPLHDLQKLLTILPDPLHAPHVVSILNMPACTDVTPD 181
Query: 759 PLQDRHVSGVVPGGTPAPPQISHVTDVWKVTVLLQPXXXXXXXXXXXXXXXRPP 920
PLQ VSG+VPGGTP PPQ+ + V V VL P PP
Sbjct: 180 PLQRLQVSGLVPGGTPLPPQVLQIISV*NVMVLAHPRTASIKESSTNVLTSCPP 19
Score = 55.6 bits (115), Expect(2) = 1e-030
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = +3 / -2
Query: 387 RTTSPLRVGT*TVPPKIA*VTFRTAST*ISPFSLRK 494
RTTSP+RVGT* VPPK+A*V T ST*IS SLRK
Sbjct: 555 RTTSPVRVGT*MVPPKMA*VMLNTVST*ISDPSLRK 448
>gb|BE240281.1|BE240281 EST404330 MHRP- Medicago truncatula cDNA clone pMHRP-43D11, mRNA
sequence
Length = 554
Score = 180 bits (387), Expect(2) = 1e-069
Identities = 72/130 (55%), Positives = 90/130 (69%)
Frame = -2 / +3
Query: 931 DRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETCLXXXXXX 752
+R+ GG+DVK +ELS +EA +GC+KT+TFQT + C CGG+GVPPGT PETC
Sbjct: 6 NRNIGGQDVKTFVELSFMEAVRGCAKTITFQTDMICNTCGGSGVPPGTRPETCKRCKGSG 185
Query: 751 XXXXXXXXFRMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKV 572
FRM++TC C GSGK VK FCK+C+G KV KSV+LDI+ G DN +TIKV
Sbjct: 186 VTSVQAGIFRMETTCGACRGSGKIVKSFCKSCKGAKVNRATKSVKLDIMAGIDNNETIKV 365
Query: 571 VRSGGEDPDG 542
RSGG DP+G
Sbjct: 366 YRSGGADPEG 395
Score = 105 bits (225), Expect(2) = 1e-069
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = -2 / +3
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVL 386
G + RPGDLYVT++VREDPVFRRE DIHVD VL++TQAILGGT+QVPTL+ DVVL
Sbjct: 378 GADPEGDRPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTWDVVL 554
Score = 100 bits (212), Expect(2) = 2e-030
Identities = 47/114 (41%), Positives = 57/114 (50%)
Frame = +3 / -2
Query: 579 MVSSLSEPGSMSRRTDFLPGTTLFPLHALQNSFTVFPEPPHFVQVDCILNGPEKKNINPE 758
MVS LS P +S TD + T PLH LQ T+ P+P H V ILN P ++ P+
Sbjct: 358 MVSLLSIPAIISNLTDLVALLTFAPLHDLQKLLTILPDPLHAPHVVSILNMPACTDVTPD 179
Query: 759 PLQDRHVSGVVPGGTPAPPQISHVTDVWKVTVLLQPXXXXXXXXXXXXXXXRPP 920
PLQ VSG+VPGGTP PPQ+ + V V VL P PP
Sbjct: 178 PLQRLQVSGLVPGGTPLPPQVLQIISV*NVMVLAHPRTASIKESSTNVLTSCPP 17
Score = 55.1 bits (114), Expect(2) = 2e-030
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2 / -1
Query: 389 NNVSTESWDLNCPSQNCLSHIQDSINMNITFLSSENRILTNLEGHIKIT 535
NN+ ++SWDLN +QN LS SI MNI S+E+RI +L+ +IKIT
Sbjct: 551 NNIPSKSWDLNGSAQNGLSDA*YSIYMNIRSFSTEDRIFPDLDSNIKIT 405
>gb|BF004228.1|BF004228 EST432726 KV1 Medicago truncatula cDNA clone pKV1-17A21, mRNA
sequence
Length = 487
Score = 170 bits (366), Expect(2) = 6e-064
Identities = 69/98 (70%), Positives = 83/98 (84%)
Frame = -2 / +2
Query: 562 GGEDPDGRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLK 383
G + RPGDLYVT++VREDPVFRRE DIHVD VL++TQAILGGT+QVPTL+GDVVLK
Sbjct: 185 GADPEGDRPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTGDVVLK 364
Query: 382 IKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIP 269
++PGTQ GQ+VVL+ KGIKT+ G+QYVHFNV+IP
Sbjct: 365 VRPGTQHGQKVVLKQKGIKTKKYNSLGNQYVHFNVSIP 478
Score = 101 bits (215), Expect(2) = 6e-029
Identities = 53/77 (68%), Positives = 56/77 (72%)
Frame = +3 / -2
Query: 264 FSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TVPPKIA* 443
F+GMLTLK TY* P FLVLIPF RTT *P VPG RTTSP+RVGT* VPPK+A*
Sbjct: 483 FTGMLTLK*TY*LPNELYFLVLIPFCFRTTF*PCCVPGRTLRTTSPVRVGT*MVPPKMA* 304
Query: 444 VTFRTAST*ISPFSLRK 494
V T ST*IS SLRK
Sbjct: 303 VMLNTVST*ISDPSLRK 253
Score = 96.8 bits (205), Expect(2) = 6e-064
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -2 / +2
Query: 724 RMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKVVRSGGEDPD 545
RM++TC C GSGK VK FCK+C+G KV KSV+LDI+ G DN +TIKV RSGG DP+
Sbjct: 20 RMETTCGACRGSGKIVKSFCKSCKGAKVNRATKSVKLDIMAGIDNNETIKVYRSGGADPE 199
Query: 544 G 542
G
Sbjct: 200 G 202
Score = 48.7 bits (100), Expect(2) = 6e-029
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = +3 / -2
Query: 579 MVSSLSEPGSMSRRTDFLPGTTLFPLHALQNSFTVFPEPPHFVQVDCILNGP 734
MVS LS P +S TD + T PLH LQ T+ P+P H V ILN P
Sbjct: 165 MVSLLSIPAIISNLTDLVALLTFAPLHDLQKLLTILPDPLHAPHVVSILNMP 10
>gb|DW018221.1|DW018221 EST1227182 MTY Medicago truncatula cDNA clone MTYB382, mRNA sequence
Length = 817
Score = 134 bits (287), Expect(3) = 1e-049
Identities = 53/72 (73%), Positives = 63/72 (87%)
Frame = -2 / +3
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYETLKDEQK 1094
A+D+YDVLG+SK+AS +EIKKAYYGLAKKLHPDTNK D +AE+KFQEV RAYE LKDE+K
Sbjct: 315 AKDFYDVLGISKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSRAYEVLKDEEK 494
Query: 1093 RSLYDQVGPDQY 1058
R YDQVG + +
Sbjct: 495 RQEYDQVGHEGF 530
Score = 88.1 bits (186), Expect(3) = 1e-049
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = -2 / +3
Query: 931 DRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
+R+ GG+DVK +ELS +EA +GC+KT+TFQT + C CGG+GVPPGT ETC
Sbjct: 621 NRNIGGQDVKTFVELSFMEAVRGCAKTITFQTDMICNTCGGSGVPPGTRLETC 779
Score = 21.7 bits (41), Expect(3) = 1e-049
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2 / +3
Query: 712 TCTKCGGSGKT 680
TC +C GSG T
Sbjct: 774 TCKRCKGSGVT 806
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence
Length = 109039
Score = 54.7 bits (113), Expect(8) = 7e-034
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -2 / -1
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYETLK 1106
LAKK+HPDTNK D +AE+KFQEV AYE +
Sbjct: 14356 LAKKIHPDTNKDDPEAEKKFQEVTLAYEVYR 14264
Score = 52.8 bits (109), Expect(11) = 2e-049
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / -2
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYE 1115
LAKKLHPD NK D +AE+KFQEV AYE
Sbjct: 27261 LAKKLHPDANKDDPEAEKKFQEVTLAYE 27178
Score = 52.8 bits (109), Expect(11) = 2e-049
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGL 1196
AR YYDVLGVSK AS +EIKKAYYG+
Sbjct: 28540 ARSYYDVLGVSKDASSSEIKKAYYGV 28463
Score = 49.6 bits (102), Expect(11) = 2e-049
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 517 LEVREDPVFRREKGDIHVDAVLNVTQAI 434
L+VREDPVFRRE D+HVDAVL+ TQ +
Sbjct: 23977 LQVREDPVFRREGLDVHVDAVLSFTQVM 23894
Score = 47.8 bits (98), Expect(8) = 7e-034
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
++FC+ C+G KVV G KSV+LDI+PG+
Sbjct: 11975 QDFCRPCKGRKVVKGTKSVKLDIIPGN 11895
Score = 46.9 bits (96), Expect(11) = 2e-049
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2 / -3
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS EA QGC+KT++FQT V C CG
Sbjct: 25334 QTVVELSFTEAIQGCTKTLSFQTDVLCNACG 25242
Score = 45.5 bits (93), Expect(8) = 7e-034
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2 / -3
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS +EA QGC+KT++FQ V C CG
Sbjct: 12707 QTVIELSFMEAIQGCTKTLSFQADVLCNACG 12615
Score = 40.9 bits (83), Expect(8) = 7e-034
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = -2 / -2
Query: 391 VLKIKPGTQPGQRVVLRGKGIK 326
V ++ PGTQPGQ+VV++GKGI+
Sbjct: 9834 VWQVHPGTQPGQKVVMKGKGIR 9769
Score = 40.9 bits (83), Expect(11) = 2e-049
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / -2
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
+ FCK+C+G KVV G KSV+L PG+
Sbjct: 24612 QSFCKSCQGAKVVKGTKSVKLHTYPGN 24532
Score = 40.0 bits (81), Expect(11) = 2e-049
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -2 / -3
Query: 391 VLKIKPGTQPGQRVVLRGKGI 329
V ++ PGTQPGQ+VV++GKGI
Sbjct: 22439 VWQVHPGTQPGQKVVMKGKGI 22377
Score = 37.3 bits (75), Expect(8) = 7e-034
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+GVPPGT PETC
Sbjct: 12506 VSGGSGVPPGTKPETC 12459
Score = 36.8 bits (74), Expect(11) = 2e-049
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2 / -3
Query: 451 NVTQAILGGTVQVPTLSGDVVLKI 380
N+ QAILG T++VP+ +G V+LK+
Sbjct: 22802 NLFQAILGATIEVPSFTGSVMLKV 22731
Score = 35.9 bits (72), Expect(11) = 2e-049
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2 / -2
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+G+PPGT PETC
Sbjct: 25125 VSGGSGLPPGTKPETC 25078
Score = 35.4 bits (71), Expect(8) = 7e-034
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 601 GSDNEDTIKVVRSGGEDPDG 542
G DN +T+KV SGG DPDG
Sbjct: 11727 GKDNNETLKVDGSGGADPDG 11668
Score = 34.1 bits (68), Expect(8) = 7e-034
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -2 / -1
Query: 322 RNSPYHGDQYVHFNVNIP 269
+N+ +GDQY+HFNV+IP
Sbjct: 9481 KNTFKYGDQYIHFNVSIP 9428
Score = 33.6 bits (67), Expect(11) = 2e-049
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / -3
Query: 319 NSPYHGDQYVHFNVNIP 269
N+ +GDQYVHFNV+IP
Sbjct: 21980 NTFKYGDQYVHFNVSIP 21930
Score = 31.3 bits (62), Expect(8) = 7e-034
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -1
Query: 1270 RDYYDVLGVSKSAS 1229
RDYYDVLGVS+ AS
Sbjct: 14806 RDYYDVLGVSEDAS 14765
Score = 29.9 bits (59), Expect(11) = 2e-049
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / -2
Query: 265 NLTSRQRELIEEF 227
NLT RQRELIEEF
Sbjct: 21444 NLTERQRELIEEF 21406
Score = 29.9 bits (59), Expect(11) = 2e-049
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2 / -3
Query: 724 RMQSTCTKCGGSGKTVKEFCK 662
RM+STC C G+GK V + K
Sbjct: 24947 RMESTCATCKGTGKIVSVWYK 24885
>gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-57g13, *** SEQUENCING IN
PROGRESS ***, 21 unordered pieces
Length = 127685
Score = 54.7 bits (113), Expect(8) = 2e-033
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -2 / +2
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYETLK 1106
LAKK+HPDTNK D +AE+KFQEV AYE +
Sbjct: 5909 LAKKIHPDTNKDDPEAEKKFQEVTLAYEVYR 6001
Score = 52.8 bits (109), Expect(11) = 8e-049
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / +2
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYE 1115
LAKKLHPD NK D +AE+KFQEV AYE
Sbjct: 69047 LAKKLHPDANKDDPEAEKKFQEVTLAYE 69130
Score = 52.8 bits (109), Expect(11) = 8e-049
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -2 / +1
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGL 1196
AR YYDVLGVSK AS +EIKKAYYG+
Sbjct: 67768 ARSYYDVLGVSKDASSSEIKKAYYGV 67845
Score = 49.6 bits (102), Expect(11) = 8e-049
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 517 LEVREDPVFRREKGDIHVDAVLNVTQAI 434
L+VREDPVFRRE D+HVDAVL+ TQ +
Sbjct: 72331 LQVREDPVFRREGLDVHVDAVLSFTQVM 72414
Score = 47.8 bits (98), Expect(8) = 2e-033
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -2 / +1
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
++FC+ C+G KVV G KSV+LDI+PG+
Sbjct: 8290 QDFCRPCKGRKVVKGTKSVKLDIIPGN 8370
Score = 46.9 bits (96), Expect(11) = 8e-049
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS EA QGC+KT++FQT V C CG
Sbjct: 70974 QTVVELSFTEAIQGCTKTLSFQTDVLCNACG 71066
Score = 45.5 bits (93), Expect(8) = 2e-033
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS +EA QGC+KT++FQ V C CG
Sbjct: 7558 QTVIELSFMEAIQGCTKTLSFQADVLCNACG 7650
Score = 40.9 bits (83), Expect(11) = 8e-049
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
+ FCK+C+G KVV G KSV+L PG+
Sbjct: 71696 QSFCKSCQGAKVVKGTKSVKLHTYPGN 71776
Score = 40.9 bits (83), Expect(8) = 2e-033
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = -2 / +3
Query: 391 VLKIKPGTQPGQRVVLRGKGIK 326
V ++ PGTQPGQ+VV++GKGI+
Sbjct: 10431 VWQVHPGTQPGQKVVMKGKGIR 10496
Score = 40.0 bits (81), Expect(11) = 8e-049
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -2 / +3
Query: 391 VLKIKPGTQPGQRVVLRGKGI 329
V ++ PGTQPGQ+VV++GKGI
Sbjct: 73869 VWQVHPGTQPGQKVVMKGKGI 73931
Score = 37.3 bits (75), Expect(8) = 2e-033
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / +1
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+GVPPGT PETC
Sbjct: 7759 VSGGSGVPPGTKPETC 7806
Score = 36.8 bits (74), Expect(11) = 8e-049
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2 / +3
Query: 451 NVTQAILGGTVQVPTLSGDVVLKI 380
N+ QAILG T++VP+ +G V+LK+
Sbjct: 73506 NLFQAILGATIEVPSFTGSVMLKV 73577
Score = 35.9 bits (72), Expect(11) = 8e-049
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2 / +2
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+G+PPGT PETC
Sbjct: 71183 VSGGSGLPPGTKPETC 71230
Score = 35.4 bits (71), Expect(8) = 2e-033
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2 / +3
Query: 601 GSDNEDTIKVVRSGGEDPDG 542
G DN +T+KV SGG DPDG
Sbjct: 8538 GKDNNETLKVDGSGGADPDG 8597
Score = 34.1 bits (68), Expect(8) = 2e-033
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -2 / +2
Query: 322 RNSPYHGDQYVHFNVNIP 269
+N+ +GDQY+HFNV+IP
Sbjct: 10784 KNTFKYGDQYIHFNVSIP 10837
Score = 33.6 bits (67), Expect(11) = 8e-049
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 319 NSPYHGDQYVHFNVNIP 269
N+ +GDQYVHFNV+IP
Sbjct: 74328 NTFKYGDQYVHFNVSIP 74378
Score = 31.3 bits (62), Expect(8) = 2e-033
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / +2
Query: 1270 RDYYDVLGVSKSAS 1229
RDYYDVLGVS+ AS
Sbjct: 5459 RDYYDVLGVSEDAS 5500
Score = 29.9 bits (59), Expect(11) = 8e-049
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 265 NLTSRQRELIEEF 227
NLT RQRELIEEF
Sbjct: 74864 NLTERQRELIEEF 74902
Score = 29.9 bits (59), Expect(11) = 8e-049
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2 / +3
Query: 724 RMQSTCTKCGGSGKTVKEFCK 662
RM+STC C G+GK V + K
Sbjct: 71361 RMESTCATCKGTGKIVSVWYK 71423
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence
Length = 140874
Score = 54.7 bits (113), Expect(8) = 3e-033
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -2 / -1
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYETLK 1106
LAKK+HPDTNK D +AE+KFQEV AYE +
Sbjct: 119172 LAKKIHPDTNKDDPEAEKKFQEVTLAYEVYR 119080
Score = 52.8 bits (109), Expect(11) = 2e-048
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2 / -2
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYE 1115
LAKKLHPD NK D +AE+KFQEV AYE
Sbjct: 132077 LAKKLHPDANKDDPEAEKKFQEVTLAYE 131994
Score = 52.8 bits (109), Expect(11) = 2e-048
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGL 1196
AR YYDVLGVSK AS +EIKKAYYG+
Sbjct: 133356 ARSYYDVLGVSKDASSSEIKKAYYGV 133279
Score = 49.6 bits (102), Expect(11) = 2e-048
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 517 LEVREDPVFRREKGDIHVDAVLNVTQAI 434
L+VREDPVFRRE D+HVDAVL+ TQ +
Sbjct: 128793 LQVREDPVFRREGLDVHVDAVLSFTQVM 128710
Score = 47.8 bits (98), Expect(8) = 3e-033
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
++FC+ C+G KVV G KSV+LDI+PG+
Sbjct: 116791 QDFCRPCKGRKVVKGTKSVKLDIIPGN 116711
Score = 46.9 bits (96), Expect(11) = 2e-048
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2 / -3
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS EA QGC+KT++FQT V C CG
Sbjct: 130150 QTVVELSFTEAIQGCTKTLSFQTDVLCNACG 130058
Score = 45.5 bits (93), Expect(8) = 3e-033
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2 / -3
Query: 904 KVALELSSVEAAQGCSKTVTFQTSVTCEICG 812
+ +ELS +EA QGC+KT++FQ V C CG
Sbjct: 117523 QTVIELSFMEAIQGCTKTLSFQADVLCNACG 117431
Score = 40.9 bits (83), Expect(8) = 3e-033
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = -2 / -2
Query: 391 VLKIKPGTQPGQRVVLRGKGIK 326
V ++ PGTQPGQ+VV++GKGI+
Sbjct: 114650 VWQVHPGTQPGQKVVMKGKGIR 114585
Score = 40.9 bits (83), Expect(11) = 2e-048
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2 / -2
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
+ FCK+C+G KVV G KSV+L PG+
Sbjct: 129428 QSFCKSCQGAKVVKGTKSVKLHTYPGN 129348
Score = 40.0 bits (81), Expect(11) = 2e-048
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -2 / -3
Query: 391 VLKIKPGTQPGQRVVLRGKGI 329
V ++ PGTQPGQ+VV++GKGI
Sbjct: 127255 VWQVHPGTQPGQKVVMKGKGI 127193
Score = 37.3 bits (75), Expect(8) = 3e-033
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+GVPPGT PETC
Sbjct: 117322 VSGGSGVPPGTKPETC 117275
Score = 36.8 bits (74), Expect(11) = 2e-048
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2 / -3
Query: 451 NVTQAILGGTVQVPTLSGDVVLKI 380
N+ QAILG T++VP+ +G V+LK+
Sbjct: 127618 NLFQAILGATIEVPSFTGSVMLKV 127547
Score = 35.9 bits (72), Expect(11) = 2e-048
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2 / -2
Query: 820 ICGGAGVPPGTTPETC 773
+ GG+G+PPGT PETC
Sbjct: 129941 VSGGSGLPPGTKPETC 129894
Score = 35.4 bits (71), Expect(8) = 3e-033
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 601 GSDNEDTIKVVRSGGEDPDG 542
G DN +T+KV SGG DPDG
Sbjct: 116543 GKDNNETLKVDGSGGADPDG 116484
Score = 34.1 bits (68), Expect(8) = 3e-033
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -2 / -1
Query: 322 RNSPYHGDQYVHFNVNIP 269
+N+ +GDQY+HFNV+IP
Sbjct: 114297 KNTFKYGDQYIHFNVSIP 114244
Score = 33.6 bits (67), Expect(11) = 2e-048
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / -3
Query: 319 NSPYHGDQYVHFNVNIP 269
N+ +GDQYVHFNV+IP
Sbjct: 126796 NTFKYGDQYVHFNVSIP 126746
Score = 31.3 bits (62), Expect(8) = 3e-033
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -1
Query: 1270 RDYYDVLGVSKSAS 1229
RDYYDVLGVS+ AS
Sbjct: 119622 RDYYDVLGVSEDAS 119581
Score = 29.9 bits (59), Expect(11) = 2e-048
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / -2
Query: 265 NLTSRQRELIEEF 227
NLT RQRELIEEF
Sbjct: 126260 NLTERQRELIEEF 126222
Score = 29.9 bits (59), Expect(11) = 2e-048
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2 / -3
Query: 724 RMQSTCTKCGGSGKTVKEFCK 662
RM+STC C G+GK V + K
Sbjct: 129763 RMESTCATCKGTGKIVSVWYK 129701
>gb|BG647719.1|BG647719 EST509338 HOGA Medicago truncatula cDNA clone pHOGA-17P9 5' end, mRNA
sequence
Length = 702
Score = 130 bits (279), Expect(2) = 8e-041
Identities = 55/77 (71%), Positives = 59/77 (76%)
Frame = -2 / +3
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYETLKDEQK 1094
AR YYDVLGVSK AS +EIKKAYYGLAKKLHPD NK D +AE+KFQEV AYE LKD +K
Sbjct: 252 ARSYYDVLGVSKDASSSEIKKAYYGLAKKLHPDANKDDPEAEKKFQEVTLAYEVLKDGEK 431
Query: 1093 RSLYDQVGPDQYEKTAS 1043
R YDQVG D Y S
Sbjct: 432 RQQYDQVGHDAYVNNQS 482
Score = 59.3 bits (123), Expect(2) = 8e-041
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = -2 / +3
Query: 922 FGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGV 800
FGG DVK +ELS EA QGC+KT++FQT V C + G G+
Sbjct: 573 FGGEDVKTVVELSFTEAIQGCTKTLSFQTDVLCMLVVGVGL 695
>gb|AC137508.11| Medicago truncatula clone mth2-17m13, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 91797
Score = 58.8 bits (122), Expect(6) = 2e-028
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2 / +2
Query: 1198 LAKKLHPDTNKGDADAERKFQEVQRAYE 1115
LAKKLHPDTNK D +AE+KFQEV RAYE
Sbjct: 49799 LAKKLHPDTNKDDPEAEKKFQEVSRAYE 49882
Score = 52.4 bits (108), Expect(6) = 2e-028
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = -2 / +2
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGL 1196
A+D+YDVLG+SK+AS +EIKKAYYG+
Sbjct: 49115 AKDFYDVLGISKNASSSEIKKAYYGV 49192
Score = 40.5 bits (82), Expect(6) = 2e-028
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -2 / +3
Query: 895 LELSSVEAAQGCSKTVTFQTSVTC 824
+ELS +EA +GC+KT+TFQT + C
Sbjct: 51420 VELSFMEAVRGCAKTITFQTDMIC 51491
Score = 38.2 bits (77), Expect(6) = 2e-028
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -2 / +3
Query: 676 KEFCKACRGNKVVPGRKSVRLDILPGS 596
+ FCK+C+G KV KSV+LDI+ G+
Sbjct: 52650 QSFCKSCKGAKVNRATKSVKLDIMAGN 52730
Score = 36.3 bits (73), Expect(6) = 2e-028
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / +3
Query: 820 ICGGAGVPPGTTPETC 773
I GG+GVPPGT PE+C
Sbjct: 51621 IAGGSGVPPGTRPESC 51668
Score = 34.1 bits (68), Expect(6) = 2e-028
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2 / +2
Query: 724 RMQSTCTKCGGSGKTVKEFC 665
RM++TC C GSGK VK +C
Sbjct: 51830 RMETTCGACRGSGKIVKVWC 51889
>gb|CX529710.1|CX529710 s13dNF50H03MJ029_245466 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 655
Score = 125 bits (268), Expect = 2e-027
Identities = 52/68 (76%), Positives = 56/68 (82%)
Frame = -2 / +3
Query: 1273 ARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYETLKDEQK 1094
AR YYDVLGVSK AS +EIKKAYYGLAKKLHPD NK D +AE+KFQEV AYE LKD +K
Sbjct: 450 ARSYYDVLGVSKDASSSEIKKAYYGLAKKLHPDANKDDPEAEKKFQEVTLAYEVLKDGEK 629
Query: 1093 RSLYDQVG 1070
R YDQVG
Sbjct: 630 RQQYDQVG 653
>gb|BG588366.1|BG588366 EST490175 MHRP- Medicago truncatula cDNA clone pMHRP-53A7, mRNA
sequence
Length = 825
Score = 82.6 bits (174), Expect(4) = 9e-025
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = -2 / +3
Query: 544 GRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQ 365
G PGDL+V LEV DPV +RE +I ++ AILG T++VPT+ G V LKI GTQ
Sbjct: 456 GSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQ 635
Query: 364 PGQRVVLRGKGIKTRN 317
PG +V+ KG+ N
Sbjct: 636 PGSTLVMAKKGVPLLN 683
Score = 37.3 bits (75), Expect(4) = 9e-025
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2 / +3
Query: 931 DRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
D G D +L L+ EA G K + + C C G+G PGT C
Sbjct: 57 DGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRC 215
Score = 35.9 bits (72), Expect(4) = 9e-025
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2 / +1
Query: 304 GDQYVHFNVNIPENLTSRQRELIEE 230
GDQ+V V IP+ L+S +R+LIEE
Sbjct: 700 GDQFVRVQVEIPKKLSSDERKLIEE 774
Score = 22.6 bits (43), Expect(4) = 9e-025
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2 / +3
Query: 712 TCTKCGGSGKT 680
TC+ C G+G+T
Sbjct: 288 TCSSCNGTGET 320
>gb|BG647164.1|BG647164 EST508783 HOGA Medicago truncatula cDNA clone pHOGA-15J20 5' end,
mRNA sequence
Length = 613
Score = 108 bits (230), Expect = 3e-022
Identities = 46/66 (69%), Positives = 54/66 (81%)
Frame = -2 / +1
Query: 424 TVQVPTLSGDVVLKIKPGTQPGQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQR 245
T+QVPTL+GDVVLK++PGTQ GQ+VVL+ KGIKT+ G+QYVHF IP NLT RQR
Sbjct: 1 TIQVPTLTGDVVLKVRPGTQHGQKVVLKQKGIKTKKYNSLGNQYVHFIFFIPVNLTDRQR 180
Query: 244 ELIEEF 227
ELIEEF
Sbjct: 181 ELIEEF 198
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,395,098,370
Number of Sequences: 392609
Number of extensions: 19156580
Number of successful extensions: 74426
Number of sequences better than 1.0e-020: 14
length of database: 147,244,331
effective HSP length: 56
effective length of database: 125,258,227
effective search space used: 58245075555
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)