TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.4
(582 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG453428.1|BG453428 NF091G11LF1F1085 Developing leaf Med... 51 3e-021
>gb|BG453428.1|BG453428 NF091G11LF1F1085 Developing leaf Medicago truncatula cDNA clone
NF091G11LF 5', mRNA sequence
Length = 638
Score = 50.6 bits (104), Expect(3) = 3e-021
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -2 / +3
Query: 491 NSGSWTPMRESWGSIWRLDSGHRLAAPFSLRIT 393
+S SW M++SWG++W+ D G L AP S+R+T
Sbjct: 261 DSSSWDTMQQSWGAVWKFDKGAPLKAPISIRLT 359
Score = 45.5 bits (93), Expect(3) = 3e-021
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -2 / +3
Query: 395 TNESGKTLVANQVIPANWVPNTYYRSIIQY* 303
T +SGKT+VA+ VIPA W P YRSI+ +*
Sbjct: 360 TLKSGKTIVAHNVIPAGWKPGQTYRSIVNF* 452
Score = 44.1 bits (90), Expect(3) = 3e-021
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2 / +3
Query: 581 EEGSNPVYLAVLVEFEDGDGDVVQVDLMEANSGS 480
+ GSN Y A L+E+E+GDGD+ +V+L EA S
Sbjct: 168 DSGSNQEYFAALIEYEEGDGDLNKVELKEALDSS 269
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 464,364,361
Number of Sequences: 392609
Number of extensions: 5925780
Number of successful extensions: 55548
Number of sequences better than 1.0e-020: 2
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 17701047560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)