TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula... 210 1e-053
gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula c... 204 2e-051
gb|AW688473.2|AW688473 NF008A08ST1F1000 Developing stem Med... 201 1e-050
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 169 8e-047
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 169 8e-047
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 163 2e-044
emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A1... 163 2e-039
emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A1... 163 2e-039
gb|CG920826.1|CG920826 MBECG06TF mth2 Medicago truncatula g... 163 3e-039
emb|CR342893.1| mte1-75J4FM1 BAC end, cultivar Jemalong A17... 142 2e-036
gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula... 153 2e-036
gb|AL389186.1|AL389186 MtBC53C09R1 MtBC Medicago truncatula... 148 8e-035
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 142 2e-034
gb|CX533175.1|CX533175 s13dNF0CG12MJ088_319513 Methyl Jasmo... 138 9e-032
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 133 4e-030
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 133 4e-030
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 113 1e-027
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 113 2e-027
gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula ... 95 2e-026
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 116 4e-025
gb|BF520841.1|BF520841 EST458314 DSIL Medicago truncatula c... 99 3e-023
emb|CR493732.1| mth2-143K5FM1 BAC end, cultivar Jemalong A1... 109 4e-023
gb|CB895104.1|CB895104 EST647896 HOGA Medicago truncatula c... 105 5e-022
emb|CR312700.1| mte1-35K8FM1 BAC end, cultivar Jemalong A17... 102 5e-021
>gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula cDNA clone MtBC01H02 T7, mRNA
sequence
Length = 548
Score = 210 bits (454), Expect = 1e-053
Identities = 83/107 (77%), Positives = 96/107 (89%)
Frame = +1 / +2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT DI VCILAFMPTGWG+L IAQA++P++ + G WGS+K LARGYEI+MGLLLFTP
Sbjct: 77 PHMTPQDIIVCILAFMPTGWGMLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTP 256
Query: 223 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
+AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG +K+R +R+KE*
Sbjct: 257 VAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKERASRSKE* 397
Score = 101 bits (216), Expect = 9e-021
Identities = 48/113 (42%), Positives = 61/113 (53%)
Frame = +3 / +1
Query: 24 GNPNSDPWHDGAGHICLHPCFHAHWMGFAADCPSDPACDPQDWALGLDQGSCPGLRDPDG 203
G+ N +D A H CLH C HA+W+G DC S A W LG+ + SC L D G
Sbjct: 58 GHFNRPSTYDTARHYCLHSCLHANWLGNVTDCASIKAYSTSCWILGICENSCSWL*DSHG 237
Query: 204 TSPVHAHRLPRLVPVRVGIPDQDAVQPGVQQRSADLPYPGRTQERPRDPEQRI 362
+ VH+ L LV I + +AVQP VQQR A+ Y RT+E R +QRI
Sbjct: 238 FASVHSCCLSGLVSFCFRISNPNAVQPSVQQRFANFSYSWRTEEGARFSQQRI 396
Score = 100 bits (212), Expect(2) = 1e-027
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = -2 / -3
Query: 362 YSLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVN 213
YSL R RSFLCPPRIREIC+PLLNAWLNSI V NS+T GNQARKA GVN
Sbjct: 396 YSLLREARSFLCPPRIREICKPLLNAWLNSIRV*NSETKGNQARKATGVN 247
Score = 44.6 bits (91), Expect(2) = 1e-027
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = -2 / -3
Query: 164 EPQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVMPG 42
+PQ+P G A AI + P PVGMKARMQT MS V+ G
Sbjct: 198 DPQNPARRTIGFNACAICNIPQPVGMKARMQTIMSCGVICG 76
>gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula cDNA clone pGLSD-31G15, mRNA
sequence
Length = 673
Score = 204 bits (439), Expect = 2e-051
Identities = 80/98 (81%), Positives = 91/98 (92%)
Frame = +1 / +2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
MT+ DI +CILA MPTGWG+L IAQA +P+I KTGLWGS++ALARGYE++MGLLLFTP+A
Sbjct: 233 MTIKDIIICILAVMPTGWGMLQIAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVA 412
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG K+DR
Sbjct: 413 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKRDR 526
Score = 121 bits (259), Expect = 1e-026
Identities = 57/98 (58%), Positives = 63/98 (64%)
Frame = -2 / -2
Query: 341 RSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIE 162
RS CPPRIREIC+PLL AWL SILV NS+TNGN A+KA GV A E
Sbjct: 525 RSLFCPPRIREICKPLLKAWLKSILV*NSETNGNHAKKATGVKSSKPIITSYPRASARTE 346
Query: 161 PQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVM 48
PQSPVL ++G A AI S P PVGM ARMQ MS V+
Sbjct: 345 PQSPVLAMSGLQACAICSIPQPVGMTARMQIIMSLIVI 232
>gb|AW688473.2|AW688473 NF008A08ST1F1000 Developing stem Medicago truncatula cDNA clone
NF008A08ST 5', mRNA sequence
Length = 788
Score = 201 bits (433), Expect = 1e-050
Identities = 79/98 (80%), Positives = 90/98 (91%)
Frame = +1 / +2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
MT+ DI +CILA MPTGWG+L IAQA +P+I KTGLWGS++ LARGYE++MGLLLFTPIA
Sbjct: 392 MTIKDIIICILAVMPTGWGMLQIAQACKPLIAKTGLWGSVRXLARGYEVIMGLLLFTPIA 571
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
FLAWFPFVSEFQTRMLFNQAFS+GLQISRILGG K+DR
Sbjct: 572 FLAWFPFVSEFQTRMLFNQAFSKGLQISRILGGQKRDR 685
Score = 122 bits (260), Expect = 8e-027
Identities = 56/98 (57%), Positives = 63/98 (64%)
Frame = -2 / -3
Query: 341 RSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIE 162
RS CPPRIREIC+PLL AWL SILV NS+TNGN A+KA+GV E
Sbjct: 684 RSLFCPPRIREICKPLLKAWLKSILV*NSETNGNHAKKAIGVKSSKPIITSYPRASXRTE 505
Query: 161 PQSPVLWITGRIAWAISSKPHPVGMKARMQTNMSSTVM 48
PQSPVL ++G A AI S P PVGM ARMQ MS V+
Sbjct: 504 PQSPVLAMSGLQACAICSIPQPVGMTARMQIIMSLIVI 391
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
Length = 103090
Score = 169 bits (364), Expect(2) = 8e-047
Identities = 67/86 (77%), Positives = 79/86 (91%)
Frame = +1 / +1
Query: 106 LLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 285
LL IAQA++P++ + G WGS+K LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 9931 LLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 10110
Query: 286 AFSRGLQISRILGGHKKDRGTRNKE* 363
AFSRGLQISRILGG +K+R +R+KE*
Sbjct: 10111 AFSRGLQISRILGGQRKERASRSKE* 10188
Score = 100 bits (212), Expect(2) = 5e-022
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = -2 / -3
Query: 362 YSLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVN 213
YSL R RSFLCPPRIREIC+PLLNAWLNSI V NS+T GNQARKA GVN
Sbjct: 10187 YSLLREARSFLCPPRIREICKPLLNAWLNSIRV*NSETKGNQARKATGVN 10038
Score = 48.3 bits (99), Expect(2) = 8e-047
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLI 117
P MT DI VCILAFMPTGWG+L +
Sbjct: 9293 PHMTPQDIIVCILAFMPTGWGMLQV 9367
Score = 34.5 bits (69), Expect(2) = 5e-022
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / -2
Query: 104 PHPVGMKARMQTNMSSTVMPG 42
P PVGMKARMQT MS V+ G
Sbjct: 9354 PQPVGMKARMQTIMSCGVICG 9292
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 169 bits (364), Expect(2) = 8e-047
Identities = 67/86 (77%), Positives = 79/86 (91%)
Frame = +1 / +1
Query: 106 LLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 285
LL IAQA++P++ + G WGS+K LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 81328 LLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 81507
Query: 286 AFSRGLQISRILGGHKKDRGTRNKE* 363
AFSRGLQISRILGG +K+R +R+KE*
Sbjct: 81508 AFSRGLQISRILGGQRKERASRSKE* 81585
Score = 100 bits (212), Expect(2) = 5e-022
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = -2 / -1
Query: 362 YSLFRVPRSFLCPPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVN 213
YSL R RSFLCPPRIREIC+PLLNAWLNSI V NS+T GNQARKA GVN
Sbjct: 81584 YSLLREARSFLCPPRIREICKPLLNAWLNSIRV*NSETKGNQARKATGVN 81435
Score = 48.3 bits (99), Expect(2) = 8e-047
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLI 117
P MT DI VCILAFMPTGWG+L +
Sbjct: 80690 PHMTPQDIIVCILAFMPTGWGMLQV 80764
Score = 34.5 bits (69), Expect(2) = 5e-022
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 104 PHPVGMKARMQTNMSSTVMPG 42
P PVGMKARMQT MS V+ G
Sbjct: 80751 PQPVGMKARMQTIMSCGVICG 80689
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 163 bits (350), Expect(2) = 2e-044
Identities = 64/86 (74%), Positives = 77/86 (89%)
Frame = +1 / -3
Query: 106 LLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 285
++ IAQA++P++ + G W S+K LARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 60207 IMQIAQALKPLVRRGGFWESVKTLARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 60028
Query: 286 AFSRGLQISRILGGHKKDRGTRNKE* 363
AFSRGLQISRILGG +K R +RNKE*
Sbjct: 60027 AFSRGLQISRILGGQRKGRSSRNKE* 59950
Score = 46.9 bits (96), Expect(2) = 2e-044
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +1 / -2
Query: 49 MTVLDIFVCILAFMPTGWGLLLI 117
MT+ DI VCILAFMPTGWG+L +
Sbjct: 60517 MTLQDIVVCILAFMPTGWGMLQV 60449
>emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 638
Score = 163 bits (351), Expect = 2e-039
Identities = 65/76 (85%), Positives = 73/76 (96%)
Frame = +1 / -1
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQA +P+I KTGLWGS++ALARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFS
Sbjct: 611 IAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFS 432
Query: 295 RGLQISRILGGHKKDR 342
RGLQISRILGG K+DR
Sbjct: 431 RGLQISRILGGQKRDR 384
>emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 888
Score = 163 bits (351), Expect = 2e-039
Identities = 65/76 (85%), Positives = 73/76 (96%)
Frame = +1 / -1
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQA +P+I KTGLWGS++ALARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFS
Sbjct: 756 IAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFS 577
Query: 295 RGLQISRILGGHKKDR 342
RGLQISRILGG K+DR
Sbjct: 576 RGLQISRILGGQKRDR 529
>gb|CG920826.1|CG920826 MBECG06TF mth2 Medicago truncatula genomic clone 25B11, DNA
sequence
Length = 802
Score = 163 bits (350), Expect = 3e-039
Identities = 64/86 (74%), Positives = 77/86 (89%)
Frame = +1 / -1
Query: 106 LLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 285
++ IAQA++P++ + G W S+K LARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 700 IMQIAQALKPLVRRGGFWESVKTLARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 521
Query: 286 AFSRGLQISRILGGHKKDRGTRNKE* 363
AFSRGLQISRILGG +K R +RNKE*
Sbjct: 520 AFSRGLQISRILGGQRKGRSSRNKE* 443
>emb|CR342893.1| mte1-75J4FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 724
Score = 142 bits (304), Expect(2) = 2e-036
Identities = 55/76 (72%), Positives = 67/76 (88%)
Frame = +1 / -1
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQA RPV+ G+WGS+KAL+RGYE LMG+++FTP+A LAWFPFVSEFQTR+L+NQAFS
Sbjct: 376 IAQACRPVVKAIGMWGSVKALSRGYEYLMGVVIFTPVAILAWFPFVSEFQTRLLYNQAFS 197
Query: 295 RGLQISRILGGHKKDR 342
RGLQI RIL G KK++
Sbjct: 196 RGLQIQRILAGGKKNK 149
Score = 34.1 bits (68), Expect(2) = 2e-036
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1 / -1
Query: 61 DIFVCILAFMPTGWGLLLI 117
DIF +LAF+PTGW L+ +
Sbjct: 718 DIFASLLAFLPTGWALVQV 662
>gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula cDNA clone MtBC01H02 T3, mRNA
sequence
Length = 502
Score = 153 bits (329), Expect = 2e-036
Identities = 58/76 (76%), Positives = 67/76 (88%)
Frame = +1 / +2
Query: 43 PGMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 222
P MT DI VCILAFMPTGWG+L IAQA++P++ + G WGS+K LARGYEI+MGLLLFTP
Sbjct: 275 PHMTPQDIIVCILAFMPTGWGMLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTP 454
Query: 223 IAFLAWFPFVSEFQTR 270
+AFLAWFPFVSEFQTR
Sbjct: 455 VAFLAWFPFVSEFQTR 502
>gb|AL389186.1|AL389186 MtBC53C09R1 MtBC Medicago truncatula cDNA clone MtBC53C09 T7, mRNA
sequence
Length = 544
Score = 148 bits (318), Expect = 8e-035
Identities = 59/99 (59%), Positives = 78/99 (78%)
Frame = +1 / +1
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
++V D+F ILAF+PTGWG+L IA A +PV+ + GLW I++LAR Y+ MG+L+F PIA
Sbjct: 79 LSVPDVFASILAFIPTGWGILSIAAAWKPVMKRLGLWKFIRSLARLYDAGMGMLIFVPIA 258
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
F +WFPFVS FQTR++FNQAFSRGL+IS IL G+ + G
Sbjct: 259 FFSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNNPNTG 375
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 142 bits (304), Expect(2) = 2e-034
Identities = 55/76 (72%), Positives = 67/76 (88%)
Frame = +1 / -3
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQA RPV+ G+WGS+KAL+RGYE LMG+++FTP+A LAWFPFVSEFQTR+L+NQAFS
Sbjct: 54328 IAQACRPVVKAIGMWGSVKALSRGYEYLMGVVIFTPVAILAWFPFVSEFQTRLLYNQAFS 54149
Query: 295 RGLQISRILGGHKKDR 342
RGLQI RIL G KK++
Sbjct: 54148 RGLQIQRILAGGKKNK 54101
Score = 34.1 bits (68), Expect(2) = 2e-034
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1 / -3
Query: 61 DIFVCILAFMPTGWGLLLI 117
DIF +LAF+PTGW L+ +
Sbjct: 54670 DIFASLLAFLPTGWALVQV 54614
>gb|CX533175.1|CX533175 s13dNF0CG12MJ088_319513 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 138 bits (296), Expect = 9e-032
Identities = 52/95 (54%), Positives = 75/95 (78%)
Frame = +1 / +2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+++ D+F ILAF+PTGWG+L +A + ++ GLW S++ AR Y+ MG+++F+PIA
Sbjct: 50 LSIPDLFASILAFIPTGWGILSLAITWKGIMKSLGLWESVREFARMYDAGMGMIIFSPIA 229
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
FL+WFPF+S FQ+R+LFNQAFSRGL+IS IL G+K
Sbjct: 230 FLSWFPFISTFQSRLLFNQAFSRGLEISLILSGNK 334
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 133 bits (284), Expect = 4e-030
Identities = 51/92 (55%), Positives = 69/92 (75%)
Frame = +1 / +3
Query: 58 LDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 237
+DIF +LAF+PTGWGLLLIAQ RP + T +W + A+AR Y+IL G+++ TP+A L+
Sbjct: 21993 VDIFTSLLAFLPTGWGLLLIAQVFRPFLQSTIIWSGVVAVARLYDILFGVIIMTPVALLS 22172
Query: 238 WFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
W P QTR+LFN+AFSRGL+IS+I+ G K
Sbjct: 22173 WLPGFQNMQTRILFNEAFSRGLRISQIVTGKK 22268
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 133 bits (284), Expect = 4e-030
Identities = 51/92 (55%), Positives = 69/92 (75%)
Frame = +1 / -1
Query: 58 LDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 237
+DIF +LAF+PTGWGLLLIAQ RP + T +W + A+AR Y+IL G+++ TP+A L+
Sbjct: 10804 VDIFTSLLAFLPTGWGLLLIAQVFRPFLQSTIIWSGVVAVARLYDILFGVIIMTPVALLS 10625
Query: 238 WFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
W P QTR+LFN+AFSRGL+IS+I+ G K
Sbjct: 10624 WLPGFQNMQTRILFNEAFSRGLRISQIVTGKK 10529
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 113 bits (241), Expect(2) = 1e-027
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1 / +2
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQ R ++ LW S++ L+R YE +MGL++F P A L+WFPFVSEFQTR+LFNQAFS
Sbjct: 77831 IAQTCRGLLKWAKLWASVRELSRAYEYVMGLIIFMPTAVLSWFPFVSEFQTRLLFNQAFS 78010
Query: 295 RGLQISRILGGHK 333
RGLQIS IL G K
Sbjct: 78011 RGLQISMILAGKK 78049
Score = 40.0 bits (81), Expect(2) = 1e-027
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 49 MTVLDIFVCILAFMPTGWGLLLIA 120
+TV D+F +LAFMP+GW ++L++
Sbjct: 77599 LTVSDLFASVLAFMPSGWAIILVS 77670
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 113 bits (241), Expect(2) = 2e-027
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1 / -1
Query: 115 IAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 294
IAQ R ++ LW S++ L+R YE +MGL++F P A L+WFPFVSEFQTR+LFNQAFS
Sbjct: 96003 IAQTCRGLLKWAKLWASVRELSRAYEYVMGLIIFMPTAVLSWFPFVSEFQTRLLFNQAFS 95824
Query: 295 RGLQISRILGGHK 333
RGLQIS IL G K
Sbjct: 95823 RGLQISMILAGKK 95785
Score = 40.0 bits (81), Expect(2) = 2e-027
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1 / -3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIA 120
+TV D+F +LAFMP+GW ++L++
Sbjct: 96235 LTVSDLFASVLAFMPSGWAIILVS 96164
>gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula cDNA clone pGESD8H8 5' end,
mRNA sequence
Length = 591
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +1 / +3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLL 213
MT+ DI VCILAFMPTGWG+L IAQA++P++ + G W S+K LARGYE++MG L
Sbjct: 387 MTLQDIVVCILAFMPTGWGMLQIAQALKPLVRRGGFWESVKTLARGYEVIMGFAL 551
Score = 44.6 bits (91), Expect(2) = 2e-026
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 202 GLLLFTPIAFLAWFPFV 252
GLLLFTP+AFLAWFPFV
Sbjct: 541 GLLLFTPVAFLAWFPFV 591
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 116 bits (248), Expect = 4e-025
Identities = 49/100 (49%), Positives = 67/100 (67%)
Frame = +1 / +2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G + + +CI + IA A +PV+ + GLW I++LAR Y+ MG+L+F PI
Sbjct: 16496 GFNISIVCICITLIPKC*LSFV*IAAAWKPVMKRLGLWKFIRSLARLYDAGMGMLIFVPI 16675
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 345
AF +WFPFVS FQTR++FNQAFSRGL+IS IL G+ + G
Sbjct: 16676 AFFSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNNPNTG 16795
>gb|BF520841.1|BF520841 EST458314 DSIL Medicago truncatula cDNA clone pDSIL-39F19, mRNA
sequence
Length = 474
Score = 99.1 bits (210), Expect(2) = 3e-023
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +1 / +1
Query: 154 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
LW I +LAR Y+ MG+L+F PIAF +WFPFVS FQTR++FNQAFSRGL+IS IL G+
Sbjct: 82 LWKLILSLARLYDAGMGMLIFVPIAFFSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNN 261
Query: 334 KDRG 345
+ G
Sbjct: 262 PNTG 273
Score = 30.4 bits (60), Expect(2) = 3e-023
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 76 ILAFMPTGWGLL 111
ILAF+PTGWG+L
Sbjct: 2 ILAFIPTGWGIL 37
>emb|CR493732.1| mth2-143K5FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 687
Score = 109 bits (233), Expect = 4e-023
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +1 / +2
Query: 172 ALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 342
ALARGYE LM +++FTP+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G KK +
Sbjct: 2 ALARGYEYLMAVVIFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKHK 172
>gb|CB895104.1|CB895104 EST647896 HOGA Medicago truncatula cDNA clone HOGA-33J7, mRNA
sequence
Length = 440
Score = 105 bits (225), Expect = 5e-022
Identities = 40/55 (72%), Positives = 49/55 (89%)
Frame = +1 / -1
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLL 213
MT+ DI +CILA MPTGWG+L IAQA +P+I KTGLWGS++ALARGYE++MGLLL
Sbjct: 167 MTIKDIIICILAVMPTGWGMLQIAQACKPLIAKTGLWGSVRALARGYEVIMGLLL 3
>emb|CR312700.1| mte1-35K8FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 377
Score = 102 bits (218), Expect = 5e-021
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = +1 / +1
Query: 97 GWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRML 276
GWGLLLIAQ + T +W + A+AR Y+IL G+++ TP+A L+W P QTR+L
Sbjct: 7 GWGLLLIAQVFLLFLLSTIIWSGVVAVARLYDILFGVIIMTPVALLSWLPGFQNMQTRIL 186
Query: 277 FNQAFSRGLQISRILGGHK 333
FN+AFSRGL+IS+I+ G K
Sbjct: 187 FNEAFSRGLRISQIVTGKK 243
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 619,462,904
Number of Sequences: 392609
Number of extensions: 7989795
Number of successful extensions: 35913
Number of sequences better than 1.0e-020: 28
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 22057602875
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)