TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA922301.1|CA922301 EST640019 MTUS Medicago truncatula c... 192 6e-048
gb|CX529380.1|CX529380 s13dNF90B12MJ093_244814 Methyl Jasmo... 192 6e-048
gb|AW693031.1|AW693031 NF058H11ST1F1000 Developing stem Med... 189 4e-047
gb|CG940943.1|CG940943 MBELN63TF mth2 Medicago truncatula g... 187 1e-046
emb|CR485906.1| mth2-155E9FM2 BAC end, cultivar Jemalong A1... 187 1e-046
gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 root... 178 6e-044
gb|AL384546.1|AL384546 MtBC22H06R1 MtBC Medicago truncatula... 173 2e-042
gb|CG948326.1|CG948326 MBEIJ89TR mth2 Medicago truncatula g... 149 3e-037
gb|CG947524.1|CG947524 MBEIW04TR mth2 Medicago truncatula g... 155 5e-037
gb|CG967052.1|CG967052 MBELD67TR mth2 Medicago truncatula g... 144 3e-036
gb|BM779156.1|BM779156 EST589731 KV2 Medicago truncatula cD... 150 2e-035
gb|BM779448.1|BM779448 EST590024 KV2 Medicago truncatula cD... 149 6e-035
gb|AL381926.1|AL381926 MtBC03H02R1 MtBC Medicago truncatula... 119 5e-026
>gb|CA922301.1|CA922301 EST640019 MTUS Medicago truncatula cDNA clone MTUS-52A7, mRNA
sequence
Length = 824
Score = 192 bits (413), Expect = 6e-048
Identities = 77/87 (88%), Positives = 83/87 (95%)
Frame = +1 / -1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC+VE GVRLSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 602 GPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 423
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
E+YSNGGVVLP KEIK++ILKPEIVM*
Sbjct: 422 EIYSNGGVVLPHKEIKTNILKPEIVM* 342
Score = 109 bits (233), Expect(2) = 8e-026
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -2 / +1
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTPSSTTHPG 3
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP ST PG
Sbjct: 448 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTPDSTMQPG 600
Score = 28.6 bits (56), Expect(2) = 8e-026
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / +1
Query: 260 HMTISGFKMLDLISFCGR 207
HMTISGF++ LIS G+
Sbjct: 343 HMTISGFRIFVLISLWGK 396
>gb|CX529380.1|CX529380 s13dNF90B12MJ093_244814 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 629
Score = 192 bits (413), Expect = 6e-048
Identities = 77/87 (88%), Positives = 83/87 (95%)
Frame = +1 / -3
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC+VE GVRLSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 618 GPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 439
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
E+YSNGGVVLP KEIK++ILKPEIVM*
Sbjct: 438 EIYSNGGVVLPHKEIKTNILKPEIVM* 358
Score = 109 bits (233), Expect(2) = 8e-026
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -2 / +2
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTPSSTTHPG 3
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP ST PG
Sbjct: 464 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTPDSTMQPG 616
Score = 28.6 bits (56), Expect(2) = 8e-026
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / +2
Query: 260 HMTISGFKMLDLISFCGR 207
HMTISGF++ LIS G+
Sbjct: 359 HMTISGFRIFVLISLWGK 412
>gb|AW693031.1|AW693031 NF058H11ST1F1000 Developing stem Medicago truncatula cDNA clone
NF058H11ST 5', mRNA sequence
Length = 657
Score = 189 bits (407), Expect = 4e-047
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1 / -1
Query: 4 PGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGDE 183
PGC+VE GVRLSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH DE
Sbjct: 657 PGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE 478
Query: 184 VYSNGGVVLPQKEIKSSILKPEIVM* 261
+YSNGGVVLP KEIK++ILKPEIVM*
Sbjct: 477 IYSNGGVVLPHKEIKTNILKPEIVM* 400
Score = 106 bits (227), Expect(2) = 5e-025
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / +2
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTPSSTTHP 6
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP ST P
Sbjct: 506 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTPDSTMQP 655
Score = 28.6 bits (56), Expect(2) = 5e-025
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / +2
Query: 260 HMTISGFKMLDLISFCGR 207
HMTISGF++ LIS G+
Sbjct: 401 HMTISGFRIFVLISLWGK 454
>gb|CG940943.1|CG940943 MBELN63TF mth2 Medicago truncatula genomic clone 81K6, DNA sequence
Length = 925
Score = 187 bits (403), Expect = 1e-046
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 512 GPGCTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSD 691
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIK+SIL PEIVM*
Sbjct: 692 EVYSNGGVVLPHKEIKTSILNPEIVM* 772
Score = 120 bits (257), Expect = 2e-026
Identities = 53/86 (61%), Positives = 59/86 (68%)
Frame = -2 / -2
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISGF+ML LIS G+ PR+VIFS RAH PTVECHP+ML +MQ
Sbjct: 771 HMTISGFRMLVLISLWGKTTPPLL*TSSDTWTSSPRIVIFSTRAH*PTVECHPMMLLDMQ 592
Query: 80 ACFLIRTPRMTVQRESLTPSSTTHPG 3
ACFLIRTPR+TVQ ESLTP S PG
Sbjct: 591 ACFLIRTPRITVQHESLTPDSIVQPG 514
>emb|CR485906.1| mth2-155E9FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 777
Score = 187 bits (403), Expect = 1e-046
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 512 GPGCTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSD 691
Query: 181 EVYSNGGVVLPQKEIKSSILKPEIVM* 261
EVYSNGGVVLP KEIK+SIL PEIVM*
Sbjct: 692 EVYSNGGVVLPHKEIKTSILNPEIVM* 772
Score = 120 bits (257), Expect = 2e-026
Identities = 53/86 (61%), Positives = 59/86 (68%)
Frame = -2 / -1
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISGF+ML LIS G+ PR+VIFS RAH PTVECHP+ML +MQ
Sbjct: 771 HMTISGFRMLVLISLWGKTTPPLL*TSSDTWTSSPRIVIFSTRAH*PTVECHPMMLLDMQ 592
Query: 80 ACFLIRTPRMTVQRESLTPSSTTHPG 3
ACFLIRTPR+TVQ ESLTP S PG
Sbjct: 591 ACFLIRTPRITVQHESLTPDSIVQPG 514
>gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs773, mRNA sequence
Length = 424
Score = 178 bits (384), Expect = 6e-044
Identities = 73/84 (86%), Positives = 77/84 (91%)
Frame = +1 / +2
Query: 10 CVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGDEVY 189
C +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH DEVY
Sbjct: 29 CTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEVY 208
Query: 190 SNGGVVLPQKEIKSSILKPEIVM* 261
SNGGVVLP KEIK+SIL PEIVM*
Sbjct: 209 SNGGVVLPHKEIKTSILNPEIVM* 280
Score = 118 bits (252), Expect = 1e-025
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = -2 / -2
Query: 260 HMTISGFKMLDLISFCGRXXXXXXXXXXXXXXXXPRMVIFSIRAHCPTVECHPIMLFEMQ 81
HMTISGF+ML LIS G+ PR+VIFS RAH PTVECHP+ML +MQ
Sbjct: 279 HMTISGFRMLVLISLWGKTTPPLL*TSSDTWTSSPRIVIFSTRAH*PTVECHPMMLLDMQ 100
Query: 80 ACFLIRTPRMTVQRESLTPSSTTH 9
ACFLIRTPR+TVQ ESLTP S H
Sbjct: 99 ACFLIRTPRITVQHESLTPDSIVH 28
>gb|AL384546.1|AL384546 MtBC22H06R1 MtBC Medicago truncatula cDNA clone MtBC22H06 T7, mRNA
sequence
Length = 550
Score = 173 bits (373), Expect = 2e-042
Identities = 71/79 (89%), Positives = 76/79 (96%)
Frame = +1 / +1
Query: 25 GVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGDEVYSNGGV 204
GVRLSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH DE+YSNGGV
Sbjct: 4 GVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 183
Query: 205 VLPQKEIKSSILKPEIVM* 261
VLP KEIK++ILKPEIVM*
Sbjct: 184 VLPHKEIKTNILKPEIVM* 240
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 39/44 (88%), Positives = 42/44 (95%)
Frame = -2 / -3
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTP 24
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP
Sbjct: 134 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTP 3
Score = 28.6 bits (56), Expect(2) = 6e-023
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / -3
Query: 260 HMTISGFKMLDLISFCGR 207
HMTISGF++ LIS G+
Sbjct: 239 HMTISGFRIFVLISLWGK 186
>gb|CG948326.1|CG948326 MBEIJ89TR mth2 Medicago truncatula genomic clone 62O10, DNA
sequence
Length = 929
Score = 149 bits (320), Expect(2) = 3e-037
Identities = 58/66 (87%), Positives = 61/66 (92%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 692 GPGCTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSD 871
Query: 181 EVYSNG 198
EVYSNG
Sbjct: 872 EVYSNG 889
Score = 27.2 bits (53), Expect(2) = 3e-037
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 199 GVVLPQKEIKSSI 237
GVVLP KEIK+SI
Sbjct: 891 GVVLPHKEIKTSI 929
>gb|CG947524.1|CG947524 MBEIW04TR mth2 Medicago truncatula genomic clone 65B7, DNA sequence
Length = 899
Score = 155 bits (334), Expect = 5e-037
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 692 GPGCTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSD 871
Query: 181 EVYSNGGVV 207
EVYSNGGVV
Sbjct: 872 EVYSNGGVV 898
>gb|CG967052.1|CG967052 MBELD67TR mth2 Medicago truncatula genomic clone 78L14, DNA
sequence
Length = 947
Score = 144 bits (308), Expect(2) = 3e-036
Identities = 56/64 (87%), Positives = 59/64 (92%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC +E GVRLS CTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 692 GPGCTIESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSD 871
Query: 181 EVYS 192
EVYS
Sbjct: 872 EVYS 883
Score = 29.5 bits (58), Expect(2) = 3e-036
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 202 VVLPQKEIKSSILKPEI 252
VVLP KEIK+SIL EI
Sbjct: 895 VVLPHKEIKTSILNREI 945
>gb|BM779156.1|BM779156 EST589731 KV2 Medicago truncatula cDNA clone pKV2-51K19, mRNA
sequence
Length = 618
Score = 150 bits (322), Expect = 2e-035
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC+VE GVRLSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 422 GPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 601
Query: 181 EVYSN 195
E+YSN
Sbjct: 602 EIYSN 616
Score = 109 bits (233), Expect = 4e-023
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -2 / -1
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTPSSTTHPG 3
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP ST PG
Sbjct: 576 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTPDSTMQPG 424
>gb|BM779448.1|BM779448 EST590024 KV2 Medicago truncatula cDNA clone pKV2-52A17, mRNA
sequence
Length = 623
Score = 149 bits (319), Expect = 6e-035
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +1 / +1
Query: 1 GPGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHGGD 180
GPGC+VE GV+LSRCTVMRGVRIKKHACIS+SIIGWHSTVGQWAR+ENMTILGEDVH D
Sbjct: 427 GPGCIVESGVKLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 606
Query: 181 EVYSN 195
E+YSN
Sbjct: 607 EIYSN 621
Score = 109 bits (233), Expect = 4e-023
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -2 / -1
Query: 155 RMVIFSIRAHCPTVECHPIMLFEMQACFLIRTPRMTVQRESLTPSSTTHPG 3
R+VIFS RAHCPTVECHPI+L EMQACFLIRTPR+TVQRESLTP ST PG
Sbjct: 581 RIVIFSTRAHCPTVECHPIILLEMQACFLIRTPRITVQRESLTPDSTMQPG 429
>gb|AL381926.1|AL381926 MtBC03H02R1 MtBC Medicago truncatula cDNA clone MtBC03H02 T7, mRNA
sequence
Length = 465
Score = 119 bits (254), Expect = 5e-026
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +1 / +2
Query: 97 IIGWHSTVGQWARIENMTILGEDVHGGDEVYSNGGVVLPQKEIKSSILKPEIVM* 261
IIGWHSTVGQWAR+ENMTILGEDVH DE+YSNGGVVLP KEIK++ILKPEIVM*
Sbjct: 2 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIVM* 166
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 724,853,732
Number of Sequences: 392609
Number of extensions: 10182045
Number of successful extensions: 49918
Number of sequences better than 1.0e-020: 13
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 21301342205
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)