TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula c... 134 7e-032
gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medi... 134 1e-031
gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infect... 138 1e-031
gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula c... 136 5e-031
gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula c... 112 8e-031
gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula c... 134 2e-030
gb|AC161401.2| Medicago truncatula chromosome 7 clone mte1-... 67 3e-028
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 77 5e-028
gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago... 81 8e-027
gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cD... 121 2e-026
emb|CR315993.1| mte1-4P5FM1 BAC end, cultivar Jemalong A17 ... 66 5e-021
gb|BE248680.2|BE248680 NF022H06DT1F1057 Drought Medicago tr... 102 8e-021
>gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula cDNA clone pGVSN-12F5, mRNA
sequence
Length = 580
Score = 134 bits (287), Expect(2) = 7e-032
Identities = 58/104 (55%), Positives = 68/104 (65%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV +DAG+G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS+Q
Sbjct: 208 AVTGNDAGQGSLLAALAEAGFLIGLEKNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQ 387
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDA 467
YGTPSYWMQ F ES+GA + ++ AITWQ++
Sbjct: 388 LYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNS 519
Score = 116 bits (248), Expect(2) = 3e-026
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -3
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFFS P+R
Sbjct: 446 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIRN 267
Query: 720 AASANEARRLPLPASLLQTA 779
ASA A+RLP PAS TA
Sbjct: 266 PASARAAKRLPCPASFPVTA 207
Score = 24.4 bits (47), Expect(2) = 7e-032
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 466 ENSFLRVKVVNFGSDPVS 413
+ +++R+K VNFG+ V+
Sbjct: 526 KKNYIRIKAVNFGTSAVN 579
Score = 23.5 bits (45), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -3
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 512 CQVIADATSEFE 477
>gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medicago truncatula cDNA clone
NF008B12PH 5', mRNA sequence
Length = 670
Score = 134 bits (287), Expect(2) = 1e-031
Identities = 58/104 (55%), Positives = 68/104 (65%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV +DAG+G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS+Q
Sbjct: 294 AVTGNDAGQGSLLAALAEAGFLIGLEKNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQ 473
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDA 467
YGTPSYWMQ F ES+GA + ++ AITWQ++
Sbjct: 474 LYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNS 605
Score = 116 bits (248), Expect(2) = 3e-026
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFFS P+R
Sbjct: 532 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIRN 353
Query: 720 AASANEARRLPLPASLLQTA 779
ASA A+RLP PAS TA
Sbjct: 352 PASARAAKRLPCPASFPVTA 293
Score = 24.0 bits (46), Expect(2) = 1e-031
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3 / +2
Query: 460 SFLRVKVVNFGSDPVSL 410
+++R K VNFG+ V+L
Sbjct: 617 NYIRXKAVNFGTSAVNL 667
Score = 23.5 bits (45), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 598 CQVIADATSEFE 563
>gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 455
Score = 138 bits (295), Expect = 1e-031
Identities = 63/142 (44%), Positives = 83/142 (58%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV +DAG+G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS+Q
Sbjct: 27 AVTGNDAGQGSLLAALAEAGFLIGLEKNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQ 206
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDAENSFLRVKVVNFGSDP 419
YGTPSYWMQ F ES+GA + ++ AITWQ++ + +++
Sbjct: 207 LYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNSVDKKNHIRIKAVNFGT 386
Query: 418 VSLTVSTSGLGASVNALGSTAT 353
++ + S G N+L S+ +
Sbjct: 387 SAVNLKISFNGLDPNSLQSSGS 452
Score = 116 bits (248), Expect(2) = 3e-026
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFFS P+R
Sbjct: 265 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIRN 86
Query: 720 AASANEARRLPLPASLLQTA 779
ASA A+RLP PAS TA
Sbjct: 85 PASARAAKRLPCPASFPVTA 26
Score = 23.5 bits (45), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -2
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 331 CQVIADATSEFE 296
>gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 624
Score = 136 bits (291), Expect = 5e-031
Identities = 63/139 (45%), Positives = 81/139 (58%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV +DAG+G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS+Q
Sbjct: 206 AVTGNDAGQGSLLAALAEAGFLIGLEKNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQ 385
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDAENSFLRVKVVNFGSDP 419
YGTPSYWMQ F ES+GA + ++ AITWQ++ + +++
Sbjct: 386 LYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNSVDKKNYIRIKAVNFGT 565
Query: 418 VSLTVSTSGLGASVNALGS 362
++ + S G N+L S
Sbjct: 566 SAVNLKISFNGLDPNSLQS 622
Score = 116 bits (248), Expect(2) = 3e-026
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFFS P+R
Sbjct: 444 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIRN 265
Query: 720 AASANEARRLPLPASLLQTA 779
ASA A+RLP PAS TA
Sbjct: 264 PASARAAKRLPCPASFPVTA 205
Score = 23.5 bits (45), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 510 CQVIADATSEFE 475
>gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 668
Score = 112 bits (240), Expect = 5e-024
Identities = 52/119 (43%), Positives = 70/119 (58%)
Frame = -3 / -2
Query: 700 KNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMIHPVNI 521
KNSDIV MASYAPLFVN ND+ PDAIVFNS+Q YGTPSYWMQ F ES+GA + ++
Sbjct: 667 KNSDIVHMASYAPLFVNANDRR*TPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 488
Query: 520 XXXXXXXXXXXAITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLT 344
AITWQ++ + +++ ++ + S G N+L S+ + T
Sbjct: 487 QTTASNSLVASAITWQNSVDKKNYIRIKAVNFGTSAVNLKISFNGLDPNSLQSSGSTKT 311
Score = 82.2 bits (173), Expect(3) = 2e-024
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +3 / +3
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFF 701
+AP DS K CIQ*LGVP* +EL TIASG H+ SL+FTKSGA*LAI TISLFF
Sbjct: 507 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGVHLLSLAFTKSGA*LAIWTISLFF 668
Score = 80.8 bits (170), Expect(3) = 8e-031
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / -2
Query: 382 SVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDL 212
S+ + GST TVLTS N+MDENSFS P KV P++S L + + M V + PHSFT+FDL
Sbjct: 340 SLQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIVPPHSFTSFDL 170
Score = 59.3 bits (123), Expect(3) = 8e-031
Identities = 30/51 (58%), Positives = 36/51 (70%)
Frame = -2 / -1
Query: 701 EEQ*YCSDGKLRTTLRERQ*PNVEPGRYRLQLLAALWNS*LLDADDFPRVK 549
+EQ*YC G+LR+T + Q* V PG +QL +ALWNS*LLDA F RVK
Sbjct: 668 KEQ*YCPYGELRSTFCKCQ**EVNPGCNCIQLFSALWNS*LLDAIIFLRVK 516
Score = 45.5 bits (93), Expect(3) = 2e-024
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = +3 / +3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDP 368
+S V E G ++T + L S L+ G T FG KEFSS+ DV TV V+P
Sbjct: 171 KSNDVNECGGTITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVFVEP 326
Score = 33.1 bits (66), Expect(3) = 8e-031
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -3 / -2
Query: 466 ENSFLRVKVVNFGSDPVSLTVSTSGL 389
+ +++R+K VNFG+ V+L +S +GL
Sbjct: 427 KKNYIRIKAVNFGTSAVNLKISFNGL 350
Score = 23.5 bits (45), Expect(3) = 2e-024
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 441 CQVIADATSEFE 476
>gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 514
Score = 134 bits (287), Expect = 2e-030
Identities = 58/104 (55%), Positives = 68/104 (65%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV +DAG+G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS+Q
Sbjct: 194 AVTGNDAGQGSLLAALAEAGFLIGLEKNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQ 373
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDA 467
YGTPSYWMQ F ES+GA + ++ AITWQ++
Sbjct: 374 LYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNS 505
Score = 116 bits (248), Expect(2) = 3e-026
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFFS P+R
Sbjct: 432 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIRN 253
Query: 720 AASANEARRLPLPASLLQTA 779
ASA A+RLP PAS TA
Sbjct: 252 PASARAAKRLPCPASFPVTA 193
Score = 23.5 bits (45), Expect(2) = 3e-026
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -2
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 498 CQVIADATSEFE 463
>gb|AC161401.2| Medicago truncatula chromosome 7 clone mte1-59b16, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 95675
Score = 66.6 bits (139), Expect(5) = 3e-028
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3 / +2
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
W PDAIVFNS+Q+YGTPSYW+Q +F ESSGA +
Sbjct: 7925 WIPDAIVFNSYQNYGTPSYWLQQLFIESSGATL 8023
Score = 66.6 bits (139), Expect(5) = 3e-028
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3 / +3
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
W PDAIVFNS+Q+YGTPSYW+Q +F ESSGA +
Sbjct: 1428 WIPDAIVFNSYQNYGTPSYWLQQLFIESSGATL 1526
Score = 64.8 bits (135), Expect(4) = 2e-021
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -3 / +1
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
W PD IVFNS+Q+YGTPSYW+Q +F ESSGA +
Sbjct: 47212 WIPDTIVFNSYQNYGTPSYWLQQLFIESSGATL 47310
Score = 60.2 bits (125), Expect(5) = 3e-028
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = -3 / +1
Query: 448 VKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKV 296
++VVNFG+ + +S +GL + V + S+ VLTS N MDENSFS PNKV
Sbjct: 8251 LQVVNFGNATENFMISINGLNSIVQSSNSSMVVLTSSNRMDENSFSEPNKV 8403
Score = 60.2 bits (125), Expect(5) = 3e-028
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = -3 / +2
Query: 448 VKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKV 296
++VVNFG+ + +S +GL + V + S+ VLTS N MDENSFS PNKV
Sbjct: 1754 LQVVNFGNATENFMISINGLNSIVQSSNSSMVVLTSSNRMDENSFSEPNKV 1906
Score = 54.2 bits (112), Expect(4) = 2e-021
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = -3 / +3
Query: 448 VKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKV 296
++VVNFG+ + + +GL ++V + S+ VLTS N MDENSFS NKV
Sbjct: 47538 LQVVNFGNATENFMILINGLNSTVQSSNSSMVVLTSSNRMDENSFSELNKV 47690
Score = 36.8 bits (74), Expect(5) = 3e-028
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3 / +1
Query: 301 KVAPVKSQLSNAAEQMQVTLAPHSFTAFDLAL 206
++ P ++ L NA+ M V L P+S T+FDL++
Sbjct: 47914 QIVPQRTALGNASNDMDVRLPPYSVTSFDLSI 48009
Score = 36.8 bits (74), Expect(5) = 3e-028
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3 / +3
Query: 301 KVAPVKSQLSNAAEQMQVTLAPHSFTAFDLAL 206
++ P ++ L NA+ M V L P+S T+FDL++
Sbjct: 2130 QIVPQRTALGNASNDMDVRLPPYSVTSFDLSI 2225
Score = 35.4 bits (71), Expect(5) = 3e-028
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 694 SDIVQMASYAPLFVNDNDQ 638
SDIV M +YAPLF+N ND+
Sbjct: 7752 SDIVSMVAYAPLFLNTNDR 7808
Score = 35.4 bits (71), Expect(5) = 3e-028
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 694 SDIVQMASYAPLFVNDNDQ 638
SDIV M +YAPLF+N ND+
Sbjct: 1255 SDIVSMVAYAPLFLNTNDR 1311
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3 / +3
Query: 694 SDIVQMASYAPLFVNDNDQ 638
SDIV +YAPLF+N ND+
Sbjct: 47040 SDIVSKVAYAPLFLNTNDR 47096
Score = 30.9 bits (61), Expect(4) = 2e-021
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKN 695
AVW+ DAG G L GLEKN
Sbjct: 46811 AVWKEDAGAGSLYAAVAEAAFLIGLEKN 46894
Score = 30.9 bits (61), Expect(5) = 3e-028
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKN 695
AVW+ DAG G L GLEKN
Sbjct: 7523 AVWKEDAGAGSLYAAVAEAAFLIGLEKN 7606
Score = 30.9 bits (61), Expect(5) = 3e-028
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKN 695
AVW+ DAG G L GLEKN
Sbjct: 1026 AVWKEDAGAGSLYAAVAEAAFLIGLEKN 1109
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 77.1 bits (162), Expect(5) = 5e-028
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = -3 / +2
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMIHPVNIXXXXXXXXXXXAITWQDA 467
WNPDAIVFNS+Q YGTPSYWMQ F ES+GA + ++ AITWQ++
Sbjct: 58691 WNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNS 58858
Score = 47.3 bits (97), Expect(5) = 5e-028
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = -3 / +2
Query: 382 SVNALGSTATVLTSGNVMDENSFSNPNKV 296
S+ + GST TVLTS N+MDENSFS P KV
Sbjct: 59318 SLQSSGSTKTVLTSTNLMDENSFSQPKKV 59404
Score = 39.6 bits (80), Expect(5) = 5e-028
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3 / +3
Query: 694 SDIVQMASYAPLFVNDNDQ 638
SDIV MASYAPLFVN ND+
Sbjct: 58473 SDIVHMASYAPLFVNANDR 58529
Score = 38.6 bits (78), Expect(5) = 5e-028
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3 / +1
Query: 301 KVAPVKSQLSNAAEQMQVTLAPHSFTAFDL 212
+V P++S L + + M V + PHSFT+FDL
Sbjct: 59536 QVIPIQSLLQSVGKDMNVIVPPHSFTSFDL 59625
Score = 28.6 bits (56), Expect(5) = 5e-028
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 725 SCFPHWSGEEQ*YCS 681
S P+W+G+EQ YCS
Sbjct: 58131 SWIPYWTGKEQVYCS 58175
>gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago truncatula cDNA clone
NF080G03IR 5', mRNA sequence
Length = 653
Score = 80.8 bits (170), Expect(4) = 8e-027
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / +2
Query: 382 SVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDL 212
S+ + GST TVLTS N+MDENSFS P KV P++S L + + M V + PHSFT+FDL
Sbjct: 263 SLQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIVPPHSFTSFDL 433
Score = 41.8 bits (85), Expect(4) = 8e-027
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -2 / +1
Query: 635 VEPGRYRLQLLAALWNS*LLDADDFPRVK 549
VEPG +QL +ALWNS*LLDA F RVK
Sbjct: 1 VEPGCNCIQLFSALWNS*LLDAIIFLRVK 87
Score = 33.1 bits (66), Expect(4) = 8e-027
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -3 / +2
Query: 466 ENSFLRVKVVNFGSDPVSLTVSTSGL 389
+ +++R+K VNFG+ V+L +S +GL
Sbjct: 176 KKNYIRIKAVNFGTSAVNLKISFNGL 253
Score = 24.0 bits (46), Expect(4) = 8e-027
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 32 KKKKKNSRG 6
KKKKKNSRG
Sbjct: 625 KKKKKNSRG 651
>gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cDNA clone pKV3-16D2, mRNA
sequence
Length = 616
Score = 121 bits (258), Expect = 2e-026
Identities = 53/119 (44%), Positives = 72/119 (60%)
Frame = -3 / -2
Query: 700 KNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMIHPVNI 521
KNSD+V MASYAPLFVN ND+ WNPDAIVFNS+Q YGTPSYWMQ F ES+GA + ++
Sbjct: 615 KNSDMVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 436
Query: 520 XXXXXXXXXXXAITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLT 344
AITWQ++ + +++ ++ + S G N+L S+ + T
Sbjct: 435 QTTASNSLVASAITWQNSVDKKNYIRIQAVNFGTSAVNLKISFNGLDPNSLQSSGSTKT 259
Score = 85.4 bits (180), Expect(3) = 3e-025
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +3 / +2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFF 701
+AP DS K CIQ*LGVP* +EL TIASGFH+ SL+FTKSGA*LAI TISLFF
Sbjct: 455 VAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFF 616
Score = 80.8 bits (170), Expect(2) = 9e-025
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / -2
Query: 382 SVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDL 212
S+ + GST TVLTS N+MDENSFS P KV P++S L + + M V + PHSFT+FDL
Sbjct: 288 SLQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIVPPHSFTSFDL 118
Score = 56.1 bits (116), Expect(2) = 9e-025
Identities = 30/51 (58%), Positives = 36/51 (70%)
Frame = -2 / -1
Query: 701 EEQ*YCSDGKLRTTLRERQ*PNVEPGRYRLQLLAALWNS*LLDADDFPRVK 549
+EQ*Y G+LR+T + Q* VEPG +QL +ALWNS*LLDA F RVK
Sbjct: 616 KEQ*YGPYGELRSTFCKCQ**EVEPGCNCIQLFSALWNS*LLDAIIFLRVK 464
Score = 45.5 bits (93), Expect(3) = 3e-025
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = +3 / +2
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDP 368
+S V E G ++T + L S L+ G T FG KEFSS+ DV TV V+P
Sbjct: 119 KSNDVNECGGTITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVFVEP 274
Score = 23.5 bits (45), Expect(3) = 3e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 474 CHVIADAASELE 509
C VIADA SE E
Sbjct: 389 CQVIADATSEFE 424
>emb|CR315993.1| mte1-4P5FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 724
Score = 66.1 bits (138), Expect(3) = 5e-021
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3 / -3
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
W PDAIVFNS+Q+YGTPSYW+Q +F ESSGA +
Sbjct: 467 WIPDAIVFNSYQNYGTPSYWLQHLFIESSGATL 369
Score = 41.4 bits (84), Expect(3) = 5e-021
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -3 / -2
Query: 448 VKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDEN 320
++VV+FG+ + +S +GL + V + S+ VLTS N MDEN
Sbjct: 141 LQVVDFGNATENFMISINGLNSIVQSSNSSMVVLTSSNRMDEN 13
Score = 35.4 bits (71), Expect(3) = 5e-021
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3 / -1
Query: 694 SDIVQMASYAPLFVNDNDQ 638
SDIV M +YAPLF+N ND+
Sbjct: 640 SDIVSMVAYAPLFLNTNDR 584
>gb|BE248680.2|BE248680 NF022H06DT1F1057 Drought Medicago truncatula cDNA clone NF022H06DT
5', mRNA sequence
Length = 375
Score = 102 bits (217), Expect = 8e-021
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = -3 / +1
Query: 709 GLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGA 542
GLEKNSD+V M +YAPLFVN ND+ W PDAIVF+S Q YG PSYW+ +F+ESSGA
Sbjct: 88 GLEKNSDVVSMVNYAPLFVNTNDRKWTPDAIVFDSHQVYGIPSYWLIKLFKESSGA 255
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 707,130,523
Number of Sequences: 392609
Number of extensions: 8928446
Number of successful extensions: 80905
Number of sequences better than 1.0e-020: 15
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 25838906225
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)