TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula... 204 1e-051
gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula c... 193 2e-048
gb|AW688473.2|AW688473 NF008A08ST1F1000 Developing stem Med... 191 1e-047
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 171 4e-046
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 171 5e-045
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 160 1e-041
emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A1... 161 1e-038
emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A1... 161 1e-038
gb|CG920826.1|CG920826 MBECG06TF mth2 Medicago truncatula g... 160 2e-038
emb|CR342893.1| mte1-75J4FM1 BAC end, cultivar Jemalong A17... 145 8e-037
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 145 1e-034
gb|AL389186.1|AL389186 MtBC53C09R1 MtBC Medicago truncatula... 146 3e-034
gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula... 145 5e-034
gb|CX533175.1|CX533175 s13dNF0CG12MJ088_319513 Methyl Jasmo... 136 3e-031
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 129 4e-029
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 129 4e-029
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 113 7e-026
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 113 9e-026
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 116 2e-025
gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula ... 88 3e-024
gb|BF520841.1|BF520841 EST458314 DSIL Medicago truncatula c... 99 3e-023
emb|CR493732.1| mth2-143K5FM1 BAC end, cultivar Jemalong A1... 109 4e-023
>gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula cDNA clone MtBC01H02 T7, mRNA
sequence
Length = 548
Score = 204 bits (440), Expect = 1e-051
Identities = 80/100 (80%), Positives = 93/100 (93%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAFMPTGWG+L IAQA++P++++ G WGS+K LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 98 IIVCILAFMPTGWGMLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWF 277
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +K+R +RSKE*
Sbjct: 278 PFVSEFQTRMLFNQAFSRGLQISRILGGQRKERASRSKE* 397
Score = 99.1 bits (210), Expect(2) = 7e-026
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = -2 / -3
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
YSLLR RSFLCPPRIREIC+PLL AWLNSI V NS+T GNQARKA GVN
Sbjct: 396 YSLLREARSFLCPPRIREICKPLLNAWLNSIRV*NSETKGNQARKATGVN 247
Score = 39.1 bits (79), Expect(2) = 7e-026
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = -2 / -3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P G A AI + P PVGMKARMQT M
Sbjct: 198 DPQNPARRTIGFNACAICNIPQPVGMKARMQTIM 97
>gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula cDNA clone pGLSD-31G15, mRNA
sequence
Length = 673
Score = 193 bits (417), Expect = 2e-048
Identities = 76/93 (81%), Positives = 86/93 (92%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I +CILA MPTGWG+L IAQA +P+I K GLWGS++ALARGYE++MGLLLFTP+AFLAWF
Sbjct: 248 IIICILAVMPTGWGMLQIAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVAFLAWF 427
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
PFVSEFQTRMLFNQAFSRGLQISRILGG K+DR
Sbjct: 428 PFVSEFQTRMLFNQAFSRGLQISRILGGQKRDR 526
Score = 117 bits (250), Expect = 2e-025
Identities = 57/115 (49%), Positives = 68/115 (59%)
Frame = -2 / -2
Query: 346 DDITPDRRTFNQQPYYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARK 167
D I T ++ Y+ + RS CPPRIREIC+PLLKAWL SILV NS+TNGN A+K
Sbjct: 591 DPIENSCTTGHRSLVYNHSLLVRSLFCPPRIREICKPLLKAWLKSILV*NSETNGNHAKK 412
Query: 166 AMGVNXXXXXXXXXXXXXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A GV A +P SP+ ++GL A AI S P PVGM ARMQ M
Sbjct: 411 ATGVKSSKPIITSYPRASARTEPQSPVLAMSGLQACAICSIPQPVGMTARMQIIM 247
>gb|AW688473.2|AW688473 NF008A08ST1F1000 Developing stem Medicago truncatula cDNA clone
NF008A08ST 5', mRNA sequence
Length = 788
Score = 191 bits (411), Expect = 1e-047
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I +CILA MPTGWG+L IAQA +P+I K GLWGS++ LARGYE++MGLLLFTPIAFLAWF
Sbjct: 407 IIICILAVMPTGWGMLQIAQACKPLIAKTGLWGSVRXLARGYEVIMGLLLFTPIAFLAWF 586
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
PFVSEFQTRMLFNQAFS+GLQISRILGG K+DR
Sbjct: 587 PFVSEFQTRMLFNQAFSKGLQISRILGGQKRDR 685
Score = 116 bits (249), Expect = 2e-025
Identities = 52/93 (55%), Positives = 60/93 (64%)
Frame = -2 / -3
Query: 280 RSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALID 101
RS CPPRIREIC+PLLKAWL SILV NS+TNGN A+KA+GV +
Sbjct: 684 RSLFCPPRIREICKPLLKAWLKSILV*NSETNGNHAKKAIGVKSSKPIITSYPRASXRTE 505
Query: 100 PHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
P SP+ ++GL A AI S P PVGM ARMQ M
Sbjct: 504 PQSPVLAMSGLQACAICSIPQPVGMTARMQIIM 406
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
Length = 103090
Score = 171 bits (367), Expect(3) = 4e-046
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +3 / +1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
LL IAQA++P++++ G WGS+K LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 9931 LLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 10110
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG +K+R +RSKE*
Sbjct: 10111 AFSRGLQISRILGGQRKERASRSKE* 10188
Score = 40.5 bits (82), Expect(3) = 4e-046
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLI 56
I VCILAFMPTGWG+L +
Sbjct: 9314 IIVCILAFMPTGWGMLQV 9367
Score = 29.9 bits (59), Expect(3) = 4e-046
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1 / +3
Query: 370 RILGSVCMYVCVAPSTSSMYVCMRM*VQRILGSLCICMY 486
RIL + + V +APS + +Y+ + M +L S C+C+Y
Sbjct: 59301 RILTLLFLQVQLAPSKTLIYLVILMCFICLLVSACLCVY 59417
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 171 bits (367), Expect(2) = 5e-045
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +3 / +1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
LL IAQA++P++++ G WGS+K LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 81328 LLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 81507
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG +K+R +RSKE*
Sbjct: 81508 AFSRGLQISRILGGQRKERASRSKE* 81585
Score = 40.5 bits (82), Expect(2) = 5e-045
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLI 56
I VCILAFMPTGWG+L +
Sbjct: 80711 IIVCILAFMPTGWGMLQV 80764
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 160 bits (344), Expect(2) = 1e-041
Identities = 63/86 (73%), Positives = 78/86 (90%)
Frame = +3 / -3
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
++ IAQA++P++++ G W S+K LARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 60207 IMQIAQALKPLVRRGGFWESVKTLARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 60028
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG +K R +R+KE*
Sbjct: 60027 AFSRGLQISRILGGQRKGRSSRNKE* 59950
Score = 40.0 bits (81), Expect(2) = 1e-041
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLI 56
I VCILAFMPTGWG+L +
Sbjct: 60502 IVVCILAFMPTGWGMLQV 60449
>emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 638
Score = 161 bits (346), Expect = 1e-038
Identities = 64/76 (84%), Positives = 72/76 (94%)
Frame = +3 / -1
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQA +P+I K GLWGS++ALARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFS
Sbjct: 611 IAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFS 432
Query: 234 RGLQISRILGGHKKDR 281
RGLQISRILGG K+DR
Sbjct: 431 RGLQISRILGGQKRDR 384
>emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 888
Score = 161 bits (346), Expect = 1e-038
Identities = 64/76 (84%), Positives = 72/76 (94%)
Frame = +3 / -1
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQA +P+I K GLWGS++ALARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFS
Sbjct: 756 IAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFS 577
Query: 234 RGLQISRILGGHKKDR 281
RGLQISRILGG K+DR
Sbjct: 576 RGLQISRILGGQKRDR 529
>gb|CG920826.1|CG920826 MBECG06TF mth2 Medicago truncatula genomic clone 25B11, DNA
sequence
Length = 802
Score = 160 bits (344), Expect = 2e-038
Identities = 63/86 (73%), Positives = 78/86 (90%)
Frame = +3 / -1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
++ IAQA++P++++ G W S+K LARGYE++MGLLLFTP+AFLAWFPFVSEFQTRMLFNQ
Sbjct: 700 IMQIAQALKPLVRRGGFWESVKTLARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQ 521
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG +K R +R+KE*
Sbjct: 520 AFSRGLQISRILGGQRKGRSSRNKE* 443
>emb|CR342893.1| mte1-75J4FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 724
Score = 145 bits (311), Expect(2) = 8e-037
Identities = 56/76 (73%), Positives = 69/76 (90%)
Frame = +3 / -1
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQA RPV++ IG+WGS+KAL+RGYE LMG+++FTP+A LAWFPFVSEFQTR+L+NQAFS
Sbjct: 376 IAQACRPVVKAIGMWGSVKALSRGYEYLMGVVIFTPVAILAWFPFVSEFQTRLLYNQAFS 197
Query: 234 RGLQISRILGGHKKDR 281
RGLQI RIL G KK++
Sbjct: 196 RGLQIQRILAGGKKNK 149
Score = 31.3 bits (62), Expect(2) = 8e-037
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLI 56
IF +LAF+PTGW L+ +
Sbjct: 715 IFASLLAFLPTGWALVQV 662
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 145 bits (311), Expect(2) = 1e-034
Identities = 56/76 (73%), Positives = 69/76 (90%)
Frame = +3 / -3
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQA RPV++ IG+WGS+KAL+RGYE LMG+++FTP+A LAWFPFVSEFQTR+L+NQAFS
Sbjct: 54328 IAQACRPVVKAIGMWGSVKALSRGYEYLMGVVIFTPVAILAWFPFVSEFQTRLLYNQAFS 54149
Query: 234 RGLQISRILGGHKKDR 281
RGLQI RIL G KK++
Sbjct: 54148 RGLQIQRILAGGKKNK 54101
Score = 31.3 bits (62), Expect(2) = 1e-034
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLI 56
IF +LAF+PTGW L+ +
Sbjct: 54667 IFASLLAFLPTGWALVQV 54614
>gb|AL389186.1|AL389186 MtBC53C09R1 MtBC Medicago truncatula cDNA clone MtBC53C09 T7, mRNA
sequence
Length = 544
Score = 146 bits (313), Expect = 3e-034
Identities = 57/94 (60%), Positives = 76/94 (80%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG+L IA A +PV++++GLW I++LAR Y+ MG+L+F PIAF +WF
Sbjct: 94 VFASILAFIPTGWGILSIAAAWKPVMKRLGLWKFIRSLARLYDAGMGMLIFVPIAFFSWF 273
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PFVS FQTR++FNQAFSRGL+IS IL G+ + G
Sbjct: 274 PFVSTFQTRLMFNQAFSRGLEISLILAGNNPNTG 375
>gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula cDNA clone MtBC01H02 T3, mRNA
sequence
Length = 502
Score = 145 bits (312), Expect = 5e-034
Identities = 54/69 (78%), Positives = 64/69 (92%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAFMPTGWG+L IAQA++P++++ G WGS+K LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 296 IIVCILAFMPTGWGMLQIAQALKPIVRRAGFWGSVKTLARGYEIVMGLLLFTPVAFLAWF 475
Query: 183 PFVSEFQTR 209
PFVSEFQTR
Sbjct: 476 PFVSEFQTR 502
>gb|CX533175.1|CX533175 s13dNF0CG12MJ088_319513 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 136 bits (292), Expect = 3e-031
Identities = 51/90 (56%), Positives = 73/90 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG+L +A + +++ +GLW S++ AR Y+ MG+++F+PIAFL+WF
Sbjct: 65 LFASILAFIPTGWGILSLAITWKGIMKSLGLWESVREFARMYDAGMGMIIFSPIAFLSWF 244
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PF+S FQ+R+LFNQAFSRGL+IS IL G+K
Sbjct: 245 PFISTFQSRLLFNQAFSRGLEISLILSGNK 334
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 129 bits (276), Expect = 4e-029
Identities = 50/90 (55%), Positives = 67/90 (74%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IF +LAF+PTGWGLLLIAQ RP +Q +W + A+AR Y+IL G+++ TP+A L+W
Sbjct: 21999 IFTSLLAFLPTGWGLLLIAQVFRPFLQSTIIWSGVVAVARLYDILFGVIIMTPVALLSWL 22178
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
P QTR+LFN+AFSRGL+IS+I+ G K
Sbjct: 22179 PGFQNMQTRILFNEAFSRGLRISQIVTGKK 22268
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 129 bits (276), Expect = 4e-029
Identities = 50/90 (55%), Positives = 67/90 (74%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IF +LAF+PTGWGLLLIAQ RP +Q +W + A+AR Y+IL G+++ TP+A L+W
Sbjct: 10798 IFTSLLAFLPTGWGLLLIAQVFRPFLQSTIIWSGVVAVARLYDILFGVIIMTPVALLSWL 10619
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
P QTR+LFN+AFSRGL+IS+I+ G K
Sbjct: 10618 PGFQNMQTRILFNEAFSRGLRISQIVTGKK 10529
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 113 bits (242), Expect(2) = 7e-026
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +3 / +2
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQ R +++ LW S++ L+R YE +MGL++F P A L+WFPFVSEFQTR+LFNQAFS
Sbjct: 77831 IAQTCRGLLKWAKLWASVRELSRAYEYVMGLIIFMPTAVLSWFPFVSEFQTRLLFNQAFS 78010
Query: 234 RGLQISRILGGHK 272
RGLQIS IL G K
Sbjct: 78011 RGLQISMILAGKK 78049
Score = 33.1 bits (66), Expect(2) = 7e-026
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIA 59
+F +LAFMP+GW ++L++
Sbjct: 77614 LFASVLAFMPSGWAIILVS 77670
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 113 bits (242), Expect(2) = 9e-026
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = +3 / -1
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IAQ R +++ LW S++ L+R YE +MGL++F P A L+WFPFVSEFQTR+LFNQAFS
Sbjct: 96003 IAQTCRGLLKWAKLWASVRELSRAYEYVMGLIIFMPTAVLSWFPFVSEFQTRLLFNQAFS 95824
Query: 234 RGLQISRILGGHK 272
RGLQIS IL G K
Sbjct: 95823 RGLQISMILAGKK 95785
Score = 33.1 bits (66), Expect(2) = 9e-026
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIA 59
+F +LAFMP+GW ++L++
Sbjct: 96220 LFASVLAFMPSGWAIILVS 96164
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 116 bits (249), Expect = 2e-025
Identities = 48/94 (51%), Positives = 67/94 (71%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ +CI + IA A +PV++++GLW I++LAR Y+ MG+L+F PIAF +WF
Sbjct: 16514 VCICITLIPKC*LSFV*IAAAWKPVMKRLGLWKFIRSLARLYDAGMGMLIFVPIAFFSWF 16693
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PFVS FQTR++FNQAFSRGL+IS IL G+ + G
Sbjct: 16694 PFVSTFQTRLMFNQAFSRGLEISLILAGNNPNTG 16795
>gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula cDNA clone pGESD8H8 5' end,
mRNA sequence
Length = 591
Score = 88.1 bits (186), Expect(2) = 3e-024
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLL 152
I VCILAFMPTGWG+L IAQA++P++++ G W S+K LARGYE++MG L
Sbjct: 402 IVVCILAFMPTGWGMLQIAQALKPLVRRGGFWESVKTLARGYEVIMGFAL 551
Score = 44.6 bits (91), Expect(2) = 3e-024
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3 / +1
Query: 141 GLLLFTPIAFLAWFPFV 191
GLLLFTP+AFLAWFPFV
Sbjct: 541 GLLLFTPVAFLAWFPFV 591
>gb|BF520841.1|BF520841 EST458314 DSIL Medicago truncatula cDNA clone pDSIL-39F19, mRNA
sequence
Length = 474
Score = 99.1 bits (210), Expect(2) = 3e-023
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3 / +1
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
LW I +LAR Y+ MG+L+F PIAF +WFPFVS FQTR++FNQAFSRGL+IS IL G+
Sbjct: 82 LWKLILSLARLYDAGMGMLIFVPIAFFSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNN 261
Query: 273 KDRG 284
+ G
Sbjct: 262 PNTG 273
Score = 30.4 bits (60), Expect(2) = 3e-023
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 15 ILAFMPTGWGLL 50
ILAF+PTGWG+L
Sbjct: 2 ILAFIPTGWGIL 37
>emb|CR493732.1| mth2-143K5FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 687
Score = 109 bits (233), Expect = 4e-023
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +3 / +2
Query: 111 ALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
ALARGYE LM +++FTP+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G KK +
Sbjct: 2 ALARGYEYLMAVVIFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKHK 172
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 613,042,804
Number of Sequences: 392609
Number of extensions: 8886206
Number of successful extensions: 57780
Number of sequences better than 1.0e-020: 26
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19158603640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)