TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF649434.1|BF649434 NF080B09EC1F1076 Elicited cell cultu... 232 4e-060
gb|BF650818.1|BF650818 NF097B10EC1F1079 Elicited cell cultu... 232 4e-060
gb|BI266739.1|BI266739 NF085B07IN1F1061 Insect herbivory Me... 232 4e-060
gb|AJ497473.1|AJ497473 AJ497473 MTFLOW Medicago truncatula ... 232 4e-060
gb|CX520933.1|CX520933 s13dNF59C06VI040_449652 Virus-Infect... 232 4e-060
gb|AW573942.1|AW573942 EST316533 GVN Medicago truncatula cD... 232 5e-060
gb|DW016473.1|DW016473 EST1225434 MTY Medicago truncatula c... 229 5e-059
gb|BM779378.1|BM779378 EST589954 KV2 Medicago truncatula cD... 228 6e-059
gb|BG455780.1|BG455780 NF067D09PL1F1076 Phosphate starved l... 225 6e-058
gb|BF644261.1|BF644261 NF061F08EC1F1074 Elicited cell cultu... 213 3e-054
gb|DW018764.1|DW018764 EST1227725 MTY Medicago truncatula c... 190 6e-054
gb|CX538446.1|CX538446 s13dNF79E01GS003_460144 Germinating ... 202 6e-051
gb|AJ847442.1|AJ847442 AJ847442 MtSTA Medicago truncatula c... 201 9e-051
gb|AL376211.1|AL376211 MtBB22A12F1 MtBB Medicago truncatula... 200 2e-050
gb|BG648003.1|BG648003 EST509622 HOGA Medicago truncatula c... 174 2e-042
gb|AC153350.13| Medicago truncatula clone mth2-77l10, WORKI... 97 2e-040
gb|BI272395.1|BI272395 NF020H02FL1F1027 Developing flower M... 155 5e-037
>gb|BF649434.1|BF649434 NF080B09EC1F1076 Elicited cell culture Medicago truncatula cDNA
clone NF080B09EC 5', mRNA sequence
Length = 656
Score = 232 bits (502), Expect = 4e-060
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 146 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 325
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 326 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 475
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 456 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 277
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 276 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 181
>gb|BF650818.1|BF650818 NF097B10EC1F1079 Elicited cell culture Medicago truncatula cDNA
clone NF097B10EC 5', mRNA sequence
Length = 664
Score = 232 bits (502), Expect = 4e-060
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 139 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 318
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 319 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 468
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 449 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 270
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 269 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 174
>gb|BI266739.1|BI266739 NF085B07IN1F1061 Insect herbivory Medicago truncatula cDNA clone
NF085B07IN 5', mRNA sequence
Length = 651
Score = 232 bits (502), Expect = 4e-060
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 151 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 330
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 331 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 480
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 461 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 282
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 281 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 186
>gb|AJ497473.1|AJ497473 AJ497473 MTFLOW Medicago truncatula cDNA clone mt--abc955109g05,
mRNA sequence
Length = 623
Score = 232 bits (502), Expect = 4e-060
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 51 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 230
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 231 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 380
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 361 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 182
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 181 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 86
>gb|CX520933.1|CX520933 s13dNF59C06VI040_449652 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 522
Score = 232 bits (502), Expect = 4e-060
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 103 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 282
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 283 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 432
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 413 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 234
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 233 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 138
>gb|AW573942.1|AW573942 EST316533 GVN Medicago truncatula cDNA clone pGVN-49J6, mRNA
sequence
Length = 393
Score = 232 bits (501), Expect = 5e-060
Identities = 96/105 (91%), Positives = 101/105 (96%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 62 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 241
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*S 498
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 242 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*A 376
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 372 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 193
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 192 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 97
>gb|DW016473.1|DW016473 EST1225434 MTY Medicago truncatula cDNA clone MTYAH63, mRNA
sequence
Length = 756
Score = 229 bits (494), Expect = 5e-059
Identities = 96/110 (87%), Positives = 101/110 (91%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 130 EEDAVRKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 309
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 310 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 459
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 440 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 261
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 260 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 165
>gb|BM779378.1|BM779378 EST589954 KV2 Medicago truncatula cDNA clone pKV2-51F16, mRNA
sequence
Length = 544
Score = 228 bits (493), Expect = 6e-059
Identities = 96/110 (87%), Positives = 101/110 (91%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 44 EEDAVVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 223
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 224 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 373
Score = 153 bits (329), Expect = 3e-036
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 354 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 175
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 174 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 79
>gb|BG455780.1|BG455780 NF067D09PL1F1076 Phosphate starved leaf Medicago truncatula cDNA
clone NF067D09PL 5', mRNA sequence
Length = 683
Score = 225 bits (486), Expect = 6e-058
Identities = 95/110 (86%), Positives = 100/110 (90%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 93 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 272
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
EMWTE+PKTGKGKKKA PVNKDR ISKMFLRGDSVIIVLRN K*+ P
Sbjct: 273 EMWTEVPKTGKGKKKAQPVNKDRXISKMFLRGDSVIIVLRNXK*ASISIP 422
Score = 149 bits (321), Expect = 3e-035
Identities = 69/92 (75%), Positives = 73/92 (79%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ FL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 403 YLXFLRTMMTESPRRNILLMXRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 224
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLLLRQL+RT VLF TLI+ TD GPVLN
Sbjct: 223 RPRSFLLLRQLIRTCVLFFTLIMSTDSGPVLN 128
>gb|BF644261.1|BF644261 NF061F08EC1F1074 Elicited cell culture Medicago truncatula cDNA
clone NF061F08EC 5', mRNA sequence
Length = 682
Score = 213 bits (459), Expect = 3e-054
Identities = 88/97 (90%), Positives = 93/97 (95%)
Frame = +1 / +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
+EEEF+ GPLSVL MSV+NNTQVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+PK
Sbjct: 145 QEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPK 324
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*S 498
TGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+
Sbjct: 325 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*T 435
Score = 147 bits (316), Expect = 2e-034
Identities = 67/92 (72%), Positives = 72/92 (78%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLMNLSLFTG AFF PLPV G SVHIS TFS T+LQ SKA T
Sbjct: 431 YLGFLRTMMTESPRRNILLMNLSLFTG*AFFFPLPVFGTSVHISLTFSRTILQCLSKAMT 252
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLL RQ + T VLFLTL+ TD GP+LN
Sbjct: 251 RPRSFLLFRQFISTCVLFLTLM*STDSGPMLN 156
>gb|DW018764.1|DW018764 EST1227725 MTY Medicago truncatula cDNA clone MTYBA66, mRNA
sequence
Length = 754
Score = 190 bits (410), Expect(2) = 6e-054
Identities = 77/88 (87%), Positives = 82/88 (93%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLM SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 123 EEDAVGKNEEEEFNTGPLSVLMRSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 302
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKM 447
EMWTE+PKTGKGKKKA PVNKDRFIS +
Sbjct: 303 EMWTEVPKTGKGKKKAQPVNKDRFISNV 386
Score = 122 bits (261), Expect(2) = 6e-031
Identities = 56/75 (74%), Positives = 60/75 (80%)
Frame = -3 / -1
Query: 443 LLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVL 264
LLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA TRP SFLLLRQL+RT VL
Sbjct: 382 LLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALTRPRSFLLLRQLIRTCVL 203
Query: 263 FLTLIIRTDRGPVLN 219
F TL++ TD GPVLN
Sbjct: 202 FFTLLMSTDSGPVLN 158
Score = 41.8 bits (85), Expect(2) = 6e-054
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1 / +1
Query: 439 SKMFLRGDSVIIVLRNPK*SPNQSP 513
S MFLRGDSVIIVLRNPK*+ P
Sbjct: 376 SAMFLRGDSVIIVLRNPK*ASISIP 450
Score = 33.1 bits (66), Expect(2) = 6e-031
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNI 444
+ GFL TMMTESP RNI
Sbjct: 431 YLGFLRTMMTESPRRNI 381
>gb|CX538446.1|CX538446 s13dNF79E01GS003_460144 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 365
Score = 202 bits (435), Expect = 6e-051
Identities = 82/90 (91%), Positives = 86/90 (95%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 96 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 275
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
EMWTE+PKTGKGKKKA PVNKDRFISKMFL
Sbjct: 276 EMWTEVPKTGKGKKKAQPVNKDRFISKMFL 365
Score = 130 bits (278), Expect = 3e-029
Identities = 60/78 (76%), Positives = 63/78 (80%)
Frame = -3 / -2
Query: 452 RNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA TRP SFLLLRQL+RT
Sbjct: 364 RNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALTRPRSFLLLRQLIRT 185
Query: 272 WVLFLTLIIRTDRGPVLN 219
VLF TLI+ TD GPVLN
Sbjct: 184 CVLFFTLIMSTDSGPVLN 131
>gb|AJ847442.1|AJ847442 AJ847442 MtSTA Medicago truncatula cDNA clone MtTA01H10S6, mRNA
sequence
Length = 468
Score = 201 bits (434), Expect = 9e-051
Identities = 85/94 (90%), Positives = 87/94 (92%)
Frame = +1 / +2
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
P VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA
Sbjct: 2 PGQVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 181
Query: 412 LPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 182 QPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 283
Score = 139 bits (298), Expect = 5e-032
Identities = 65/88 (73%), Positives = 69/88 (78%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 264 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 85
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRG 231
RP SFLLLRQL+RT VLF TLI+ T G
Sbjct: 84 RPRSFLLLRQLIRTCVLFFTLIMSTCPG 1
>gb|AL376211.1|AL376211 MtBB22A12F1 MtBB Medicago truncatula cDNA clone MtBB22A12 T3, mRNA
sequence
Length = 464
Score = 200 bits (431), Expect = 2e-050
Identities = 84/91 (92%), Positives = 86/91 (94%)
Frame = +1 / +2
Query: 241 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPV 420
VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PV
Sbjct: 2 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPV 181
Query: 421 NKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
NKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 182 NKDRFISKMFLRGDSVIIVLRNPK*ASISIP 274
Score = 138 bits (297), Expect = 7e-032
Identities = 64/85 (75%), Positives = 68/85 (80%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 255 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 76
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRT 240
RP SFLLLRQL+RT VLF TLI+ T
Sbjct: 75 RPRSFLLLRQLIRTCVLFFTLIMST 1
>gb|BG648003.1|BG648003 EST509622 HOGA Medicago truncatula cDNA clone pHOGA-18D13 5' end,
mRNA sequence
Length = 508
Score = 174 bits (374), Expect = 2e-042
Identities = 72/81 (88%), Positives = 76/81 (93%)
Frame = +1 / +3
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
+VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMF
Sbjct: 9 RVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 188
Query: 451 LRGDSVIIVLRNPK*SPNQSP 513
LRGDSVIIVLR+PK*+ P
Sbjct: 189 LRGDSVIIVLRSPK*ASISIP 251
Score = 122 bits (261), Expect = 6e-027
Identities = 56/74 (75%), Positives = 59/74 (79%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
+ G L TMMTESP RNILLM SL TG AFF PLPVLG SVHISRTFS T+LQ SKA T
Sbjct: 232 YLGLLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALT 53
Query: 314 RPSSFLLLRQLMRT 273
RP SFLLLRQL+RT
Sbjct: 52 RPRSFLLLRQLIRT 11
>gb|AC153350.13| Medicago truncatula clone mth2-77l10, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 110967
Score = 97.3 bits (206), Expect(2) = 2e-040
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +1 / -1
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
LM+ ++ QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 99852 LMLILQTPMQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 99715
Score = 90.0 bits (190), Expect(2) = 2e-040
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / -1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
++PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK*+ P
Sbjct: 99618 QVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*ASISIP 99481
Score = 67.0 bits (140), Expect(2) = 2e-023
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
+ GFL TMMTESP RNILLM SL TG AFF PLPVLG
Sbjct: 99500 YLGFLRTMMTESPRRNILLMKRSLLTG*AFFFPLPVLG 99613
Score = 62.9 bits (131), Expect(2) = 2e-023
Identities = 29/41 (70%), Positives = 33/41 (80%)
Frame = -3 / +2
Query: 389 VLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWV 267
+L SVHISRTFS T+LQ SKA TRP SFLLLRQL+RT +
Sbjct: 99707 MLHTSVHISRTFSRTILQCLSKALTRPRSFLLLRQLIRTCI 99829
>gb|BI272395.1|BI272395 NF020H02FL1F1027 Developing flower Medicago truncatula cDNA clone
NF020H02FL 5', mRNA sequence
Length = 354
Score = 155 bits (334), Expect = 5e-037
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLIN RNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 142 EEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINXRNNKKLLGRVRAFDRHCNMVLENVR 321
Query: 364 EMWTEIPKTGK 396
EMWTE+PKTGK
Sbjct: 322 EMWTEVPKTGK 354
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 673,262,294
Number of Sequences: 392609
Number of extensions: 8597011
Number of successful extensions: 44757
Number of sequences better than 1.0e-020: 25
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 24074297995
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)