TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 108 2e-025
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 108 bits (231), Expect = 2e-025
Identities = 43/72 (59%), Positives = 49/72 (68%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGG SSH FA+FQGLLK +AGVDT+FTVTSK DD EFSELY FKW
Sbjct: 313 QFWVIGGASSHFFALFQGLLKVLAGVDTNFTVTSKAADDGEFSELYIFKWTSLLIPPMTL 492
Query: 189 XXXNFIGVVAGI 224
N +GV+ G+
Sbjct: 493 LIMNIVGVIVGV 528
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,133,125
Number of Sequences: 7669
Number of extensions: 21872
Number of successful extensions: 2309
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 39
effective length of database: 949,477
effective search space used: 52221235
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)