TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF049487.1|AF049487 Medicago sativa sucrose synthase mRN... 180 8e-047
>gb|AF049487.1|AF049487 Medicago sativa sucrose synthase mRNA, complete cds
Length = 2760
Score = 180 bits (388), Expect = 8e-047
Identities = 71/101 (70%), Positives = 84/101 (83%)
Frame = +1 / +2
Query: 16 GTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYSD 195
GTEH I+R PFR+E GI+R IS + WPYLETYTEDV+ + KE+ +KPDLI+GNYSD
Sbjct: 1127 GTEHCHILRVPFRDEKGIVRKWISRFEVWPYLETYTEDVAHELAKELQSKPDLIVGNYSD 1306
Query: 196 GNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
GN+VA+LLAHKLGVTQCTIAHALEKTKYP SDIY KF+ +
Sbjct: 1307 GNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEK 1429
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.317 0.135 0.399
Matrix: BLOSUM62
Number of Hits to DB: 2,596,368
Number of Sequences: 7669
Number of extensions: 32011
Number of successful extensions: 3489
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 39
effective length of database: 949,477
effective search space used: 62665482
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)