TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular tr... 94 4e-021
>gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 603
Score = 94.1 bits (199), Expect(2) = 4e-021
Identities = 36/76 (47%), Positives = 44/76 (57%)
Frame = +3 / +3
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSF G KC C+K + +D L+ YHK HCKG + YSSM+ LYC+
Sbjct: 162 TMSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCR 341
Query: 246 THFXQLFKXTGSFSKN 293
HF QLFK G+FSKN
Sbjct: 342 PHFEQLFKEHGNFSKN 389
Score = 19.9 bits (37), Expect(2) = 4e-021
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3 / +3
Query: 330 LTRXPSKXXXXXSXXQD 380
LTR PSK S Q+
Sbjct: 438 LTRTPSKAAGMFSGTQE 488
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,815,455
Number of Sequences: 7669
Number of extensions: 13047
Number of successful extensions: 847
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 40
effective length of database: 941,808
effective search space used: 84762720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)